Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006590.1

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

47682 .. 48185

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006590.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgaaagagaaaggtaagaagggcttgatcaccaaaacatgggagcgatgcaaatccatcggccgcaagagtagtagtactagcaatactacttcgtctgcggccgtgcctgctcttacaaagaagagcaaatcctgtcctcacatcgacctgtacacgacggatgatgaacatcgtcgtcatcaccgccgccaggtggcaccagaaggctgcttctctgtctacgtgggacctgacaagcaaaggtttgtggtgaaaaccgagtacgcaaaccatcctctcttcaagttgctgcttgaagaagccgagtccgaattcggttactatagtaaaggtcctctcgtgcttccttgtcacgttgaagttttctacaaggtgctgctggaaatggaggattgcggtggtgatgatcagaagatttctcgaggttgcggatttgctaagcgttatgggtcttatcatcttctcagcccgtctcgtatggttgccattaatcagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

167

Amino Acids

18.92

Weight (kDa)

9.19

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	6 cut(s)	64, 101, 187, 190, 399, 432
AcoI	YGGCCR	2 cut(s)	61, 102
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	3 cut(s)	79, 155, 266
AfiI	CCNNNNNNNGG	3 cut(s)	39, 193, 196
AgsI	TTSAA	3 cut(s)	286, 299, 362
AjnI	CCWGG	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	480
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	2 cut(s)	61, 102
ApeKI	GCWGC	3 cut(s)	210, 292, 379
ApoI	RAATTY	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	230, 335
AsuHPI	GGTGA	4 cut(s)	22, 176, 265, 416
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	2 cut(s)	230, 335
BanI	GGYRCC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	341
BbvI	GCAGC	3 cut(s)	197, 279, 366
BccI	CCATC	2 cut(s)	65, 282
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	2 cut(s)	27, 409
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	2 cut(s)	81, 502
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	6 cut(s)	64, 102, 190, 211, 293, 380
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	6 cut(s)	65, 103, 191, 212, 294, 381
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	2 cut(s)	230, 335
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	2 cut(s)	230, 335
BmiI	GGNNCC	2 cut(s)	201, 231
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	226
BsaBI	GATNNNNATC	2 cut(s)	52, 171
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 193, 196
Bse8I	GATNNNNATC	2 cut(s)	52, 171
BseBI	CCWGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	169, 274
BseJI	GATNNNNATC	2 cut(s)	52, 171
BseLI	CCNNNNNNNGG	3 cut(s)	39, 193, 196
BseMII	CTCAG	1 cut(s)	481
BseX3I	CGGCCG	2 cut(s)	61, 102
BseXI	GCAGC	3 cut(s)	197, 279, 366
Bsh1285I	CGRYCG	2 cut(s)	64, 105
BshFI	GGCC	2 cut(s)	63, 104
BshNI	GGYRCC	1 cut(s)	199
BsiEI	CGRYCG	2 cut(s)	64, 105
BsiHKCI	CYCGRG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	39, 193, 196
BsmAI	GTCTC	1 cut(s)	480
BsmBI	CGTCTC	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	63, 104
BsoBI	CYCGRG	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	27, 409
Bsp1720I	GCTNAGC	1 cut(s)	441
BspACI	CCGC	6 cut(s)	64, 101, 187, 190, 399, 432
BspANI	GGCC	2 cut(s)	63, 104
BspCNI	CTCAG	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	201, 231
BspQI	GCTCTTC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	199
BsrGI	TGTACA	1 cut(s)	153
BssMI	GATC	2 cut(s)	27, 409
BssSI	CACGAG	1 cut(s)	341
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	119, 287
BstAUI	TGTACA	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	441, 467
BstF5I	GGATG	2 cut(s)	169, 274
BstKTI	GATC	2 cut(s)	30, 412
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	2 cut(s)	27, 409
BstMCI	CGRYCG	2 cut(s)	64, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	325
BstV1I	GCAGC	3 cut(s)	197, 279, 366
BstZI	CGGCCG	2 cut(s)	61, 102
BsuRI	GGCC	2 cut(s)	63, 104
BtgZI	GCGATG	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	169, 274
Cac8I	GCNNGC	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	230, 335
Csp6I	GTAC	3 cut(s)	78, 154, 265
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	6 cut(s)	24, 63, 104, 210, 305, 471
CviKI_1	RGCY	6 cut(s)	24, 63, 104, 210, 305, 471
CviQI	GTAC	3 cut(s)	78, 154, 265
DdeI	CTNAG	2 cut(s)	441, 467
DpnI	GATC	2 cut(s)	29, 411
DpnII	GATC	2 cut(s)	27, 409
EaeI	YGGCCR	2 cut(s)	61, 102
EagI	CGGCCG	2 cut(s)	61, 102
Eam1104I	CTCTTC	2 cut(s)	119, 287
EarI	CTCTTC	2 cut(s)	119, 287
EclXI	CGGCCG	2 cut(s)	61, 102
Eco47I	GGWCC	2 cut(s)	230, 335
Eco52I	CGGCCG	2 cut(s)	61, 102
Eco88I	CYCGRG	1 cut(s)	423
EcoO109I	RGGNCCY	2 cut(s)	230, 335
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	480
FaeI	CATG	1 cut(s)	42
FaiI	YATR	4 cut(s)	40, 327, 450, 482
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	1 cut(s)	38
FbaI	TGATCA	2 cut(s)	27, 409
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	6 cut(s)	64, 102, 190, 211, 293, 380
FokI	GGATG	2 cut(s)	176, 261
Fsp4HI	GCNGC	6 cut(s)	64, 102, 190, 211, 293, 380
FspBI	CTAG	2 cut(s)	81, 502
GluI	GCNGC	6 cut(s)	64, 102, 190, 211, 293, 380
HaeIII	GGCC	2 cut(s)	63, 104
Hin1II	CATG	1 cut(s)	42
HinfI	GANTC	1 cut(s)	308
HphI	GGTGA	4 cut(s)	22, 176, 265, 416
Hpy166II	GTNNAC	2 cut(s)	156, 223
Hpy188I	TCNGA	2 cut(s)	313, 414
Hpy188III	TCNNGA	1 cut(s)	423
Hpy8I	GTNNAC	2 cut(s)	156, 223
Hpy99I	CGWCG	2 cut(s)	163, 180
HpyAV	CCTTC	2 cut(s)	13, 200
HpyCH4IV	ACGT	2 cut(s)	225, 357
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	441, 467
HpySE526I	ACGT	2 cut(s)	225, 357
Hsp92II	CATG	1 cut(s)	42
Ksp22I	TGATCA	2 cut(s)	27, 409
Kzo9I	GATC	2 cut(s)	27, 409
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	8 cut(s)	123, 148, 164, 179, 206, 216, 246, 368
Lsp1109I	GCAGC	3 cut(s)	197, 279, 366
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	81, 502
MaeII	ACGT	2 cut(s)	225, 357
MaeIII	GTNAC	2 cut(s)	320, 353
MalI	GATC	2 cut(s)	29, 411
MboI	GATC	2 cut(s)	27, 409
MboII	GAAGA	5 cut(s)	136, 274, 311, 427, 455
MluCI	AATT	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	5 cut(s)	150, 288, 348, 385, 419
MseI	TTAA	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	2 cut(s)	27, 409
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	2 cut(s)	201, 231
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	6 cut(s)	65, 103, 191, 212, 294, 381
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	226
PpuMI	RGGWCCY	2 cut(s)	230, 335
PshBI	ATTAAT	1 cut(s)	492
Psp5II	RGGWCCY	2 cut(s)	230, 335
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	201, 231
PspPI	GGNCC	2 cut(s)	230, 335
PspPPI	RGGWCCY	2 cut(s)	230, 335
RsaI	GTAC	3 cut(s)	79, 155, 266
RsaNI	GTAC	3 cut(s)	78, 154, 265
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	6 cut(s)	64, 102, 190, 211, 293, 380
Sau3AI	GATC	2 cut(s)	27, 409
Sau96I	GGNCC	2 cut(s)	230, 335
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	194
SfaNI	GCATC	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	325
Sfr274I	CTCGAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	230, 335
SlaI	CTCGAG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	6 cut(s)	64, 101, 187, 190, 399, 432
SspMI	CTAG	2 cut(s)	81, 502
StyD4I	CCNGG	1 cut(s)	192
TaiI	ACGT	2 cut(s)	228, 360
TaqI	TCGA	2 cut(s)	147, 424
TasI	AATT	1 cut(s)	314
TatI	WGTACW	2 cut(s)	77, 153
TauI	GCSGC	3 cut(s)	66, 104, 192
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	3 cut(s)	210, 292, 379
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	17, 183
TspGWI	ACGGA	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	230, 335
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	2 cut(s)	81, 502
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.