RLG00000004357

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000824
Physical Location & Seq
Reverse (-)
58678048 .. 58679695
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004357

Sequence Viewer

Length: 711 bp
ATGAACTATGGAAGCTTCGATGCTCCGATCCTCAAACCTCAACTAGATGAGAGCCGTGTCGCCACTGATGCTCTAGACCAAGCTCTCATGAACGTGCGCGATGAAGGACAGTTTTCGGAGATCAAACCTGGACAGATTGTTCTACTTCTTGCTTTGGAATTGTTTGGTTCGAGATCGGTGAAAGAAATGGAGCGGATTGTTGAATTTAAAAGTACACATGAATGTTGGGATGTCACCGTCGATTTGCTTCCCGGAATCGGTGAAGAAATGGAGAACAAGATCATTGCTATGGCGTCCACGTCAAAAATTCCACACACTTCACATATATTTCAAGGCATGGATATCGTGAAGGGAAAATGGATGAAGAATCTGATCATCAAGGCTTGGAAGCGATGCAGTACTCTACCGAAACAAAGCAGCAGGAAAGGCTCTACAGCAGCCGCTTCATTGGCGAGGAGCAAATCATGGAGCTCCAGTACTACTAGTAGTACTGGCACTTGCAAGCAGAAGAAGAACAAGGCCAAGACATGCCAAGTCGCTCCAATTGGGTGTTTTACCGTCTATGTTGGATCCGAAAAGCAGCGATTTGTGCTGAGGATAGAGTACGTTAATCATCCATTGTTCAAGATGCTGTTGGAGGATGCAGCATTGGAGTATGGGTACAAAAATGACGGTCCGATATTGCTTCCTTGCCATGTGGATCTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

237

Amino Acids

26.35

Weight (kDa)

8.81

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 155 - 236 9.6e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 1 cut(s) 99
AciI CCGC 2 cut(s) 193, 441
AclWI GGATC 4 cut(s) 22, 564, 577, 708
AcsI RAATTY 2 cut(s) 203, 306
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 6 cut(s) 214, 400, 478, 490, 605, 662
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 3 cut(s) 203, 332, 625
AhlI ACTAGT 1 cut(s) 482
AjiI CACGTC 1 cut(s) 300
AjnI CCWGG 1 cut(s) 127
AloI GAACNNNNNNTCC 2 cut(s) 123, 155
AluBI AGCT 3 cut(s) 15, 83, 471
AluI AGCT 3 cut(s) 15, 83, 471
Alw21I GWGCWC 1 cut(s) 473
AlwI GGATC 4 cut(s) 22, 564, 577, 708
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 4 cut(s) 417, 437, 580, 644
ApoI RAATTY 2 cut(s) 203, 306
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 674
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 3 cut(s) 190, 226, 272
AvaII GGWCC 1 cut(s) 674
BamHI GGATCC 1 cut(s) 569
BanII GRGCYC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 473
BbvCI CCTCAGC 1 cut(s) 593
BbvI GCAGC 4 cut(s) 429, 449, 592, 656
BceAI ACGGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 129
BclI TGATCA 1 cut(s) 372
BcnI CCSGG 1 cut(s) 252
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 3 cut(s) 44, 74, 483
BfmI CTRYAG 1 cut(s) 432
BisI GCNGC 5 cut(s) 418, 438, 441, 581, 645
BlsI GCNGC 5 cut(s) 419, 439, 442, 582, 646
BmcAI AGTACT 3 cut(s) 400, 478, 490
Bme1390I CCNGG 2 cut(s) 129, 252
Bme18I GGWCC 1 cut(s) 674
BmgBI CACGTC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 2 cut(s) 129, 252
BmsI GCATC 5 cut(s) 10, 58, 383, 618, 631
BpmI CTGGAG 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 593
BpuMI CCSGG 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 293
BsaXI ACNNNNNCTCC 4 cut(s) 460, 490, 644, 674
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 474, 496
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 4 cut(s) 235, 366, 613, 646
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 584
BseNI ACTGG 2 cut(s) 474, 496
BseRI GAGGAG 1 cut(s) 469
BseXI GCAGC 4 cut(s) 429, 449, 592, 656
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 257
BsnI GGCC 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 7 cut(s) 27, 120, 173, 279, 372, 569, 700
BspACI CCGC 2 cut(s) 193, 441
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 585
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 571
BspPI GGATC 4 cut(s) 22, 564, 577, 708
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 2 cut(s) 474, 496
BssMI GATC 7 cut(s) 27, 120, 173, 279, 372, 569, 700
BssNI GRCGYC 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 4 cut(s) 111, 238, 559, 674
BstACI GRCGYC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 1 cut(s) 593
BstF5I GGATG 4 cut(s) 235, 366, 613, 646
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 7 cut(s) 30, 123, 176, 282, 375, 572, 703
BstMBI GATC 7 cut(s) 27, 120, 173, 279, 372, 569, 700
BstMWI GCNNNNNNNGC 4 cut(s) 68, 426, 449, 589
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 127, 250
BstSFI CTRYAG 1 cut(s) 432
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 4 cut(s) 429, 449, 592, 656
BstX2I RGATCY 2 cut(s) 569, 700
BstYI RGATCY 2 cut(s) 569, 700
BsuRI GGCC 1 cut(s) 521
BtgZI GCGATG 2 cut(s) 114, 406
BtrI CACGTC 1 cut(s) 300
BtsCI GGATG 4 cut(s) 235, 366, 613, 646
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 503
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 674
CpoI CGGWCCG 1 cut(s) 674
CseI GACGC 1 cut(s) 282
Csp6I GTAC 6 cut(s) 213, 399, 477, 489, 604, 661
CspI CGGWCCG 1 cut(s) 674
CviAII CATG 6 cut(s) 88, 218, 337, 465, 528, 695
CviJI RGCY 8 cut(s) 15, 54, 83, 383, 429, 440, 471, 521
CviKI_1 RGCY 8 cut(s) 15, 54, 83, 383, 429, 440, 471, 521
CviQI GTAC 6 cut(s) 213, 399, 477, 489, 604, 661
DdeI CTNAG 1 cut(s) 593
DpnI GATC 7 cut(s) 29, 122, 175, 281, 374, 571, 702
DpnII GATC 7 cut(s) 27, 120, 173, 279, 372, 569, 700
DraI TTTAAA 1 cut(s) 208
Ecl136II GAGCTC 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 473
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 674
Eco53kI GAGCTC 1 cut(s) 471
EcoICRI GAGCTC 1 cut(s) 471
EcoRII CCWGG 1 cut(s) 127
EcoRV GATATC 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 473
FaeI CATG 6 cut(s) 91, 221, 340, 468, 531, 698
FatI CATG 6 cut(s) 87, 217, 336, 464, 527, 694
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 5 cut(s) 418, 438, 441, 581, 645
FokI GGATG 4 cut(s) 242, 373, 600, 653
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 5 cut(s) 418, 438, 441, 581, 645
FspBI CTAG 3 cut(s) 44, 74, 483
GlaI GCGC 1 cut(s) 98
GluI GCNGC 5 cut(s) 418, 438, 441, 581, 645
GsuI CTGGAG 1 cut(s) 457
HaeIII GGCC 1 cut(s) 521
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 6 cut(s) 91, 221, 340, 468, 531, 698
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 255, 367
HpaII CCGG 1 cut(s) 252
HphI GGTGA 3 cut(s) 190, 226, 272
Hpy166II GTNNAC 2 cut(s) 215, 297
Hpy188I TCNGA 5 cut(s) 27, 118, 372, 574, 678
Hpy188III TCNNGA 5 cut(s) 74, 88, 171, 346, 625
Hpy8I GTNNAC 2 cut(s) 215, 297
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 98, 343
HpyCH4III ACNGT 4 cut(s) 111, 238, 559, 674
HpyCH4IV ACGT 3 cut(s) 93, 299, 606
HpyCH4V TGCA 3 cut(s) 396, 501, 644
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 426, 449, 589
HpyF3I CTNAG 1 cut(s) 593
HpySE526I ACGT 3 cut(s) 93, 299, 606
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 6 cut(s) 91, 221, 340, 468, 531, 698
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 7 cut(s) 27, 120, 173, 279, 372, 569, 700
LmnI GCTCC 6 cut(s) 28, 190, 456, 468, 476, 544
LpnPI CCDG 6 cut(s) 114, 141, 265, 406, 477, 487
Lsp1109I GCAGC 4 cut(s) 429, 449, 592, 656
LweI GCATC 5 cut(s) 10, 58, 383, 618, 631
MaeI CTAG 3 cut(s) 44, 74, 483
MaeII ACGT 3 cut(s) 93, 299, 606
MaeIII GTNAC 1 cut(s) 232
MalI GATC 7 cut(s) 29, 122, 175, 281, 374, 571, 702
MbiI CCGCTC 1 cut(s) 193
MboI GATC 7 cut(s) 27, 120, 173, 279, 372, 569, 700
MboII GAAGA 4 cut(s) 275, 376, 520, 523
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 2 cut(s) 569, 700
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 4 cut(s) 158, 203, 306, 543
MmeI TCCRAC 2 cut(s) 547, 615
MnlI CCTC 5 cut(s) 41, 48, 447, 588, 631
MseI TTAA 2 cut(s) 207, 609
MslI CAYNNNNRTG 3 cut(s) 92, 220, 287
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 129, 252
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 129
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 68, 426, 449, 589
NciI CCSGG 1 cut(s) 252
NdeII GATC 7 cut(s) 27, 120, 173, 279, 372, 569, 700
NlaIII CATG 6 cut(s) 91, 221, 340, 468, 531, 698
NlaIV GGNNCC 1 cut(s) 571
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 531
PagI TCATGA 1 cut(s) 87
PfeI GAWTC 2 cut(s) 255, 367
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 5 cut(s) 419, 439, 442, 582, 646
Psp124BI GAGCTC 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 571
PspPI GGNCC 1 cut(s) 674
PsuI RGATCY 2 cut(s) 569, 700
RsaI GTAC 6 cut(s) 214, 400, 478, 490, 605, 662
RsaNI GTAC 6 cut(s) 213, 399, 477, 489, 604, 661
RseI CAYNNNNRTG 3 cut(s) 92, 220, 287
Rsr2I CGGWCCG 1 cut(s) 674
RsrII CGGWCCG 1 cut(s) 674
SacI GAGCTC 1 cut(s) 473
SaqAI TTAA 2 cut(s) 207, 609
SatI GCNGC 5 cut(s) 418, 438, 441, 581, 645
Sau3AI GATC 7 cut(s) 27, 120, 173, 279, 372, 569, 700
Sau96I GGNCC 1 cut(s) 674
ScaI AGTACT 3 cut(s) 400, 478, 490
ScrFI CCNGG 2 cut(s) 129, 252
SduI GDGCHC 1 cut(s) 473
SetI ASST 8 cut(s) 17, 40, 85, 96, 130, 302, 473, 609
SfaNI GCATC 5 cut(s) 10, 58, 383, 618, 631
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 1 cut(s) 674
SmiMI CAYNNNNRTG 3 cut(s) 92, 220, 287
SpeI ACTAGT 1 cut(s) 482
Sse9I AATT 4 cut(s) 158, 203, 306, 543
SsiI CCGC 2 cut(s) 193, 441
SspMI CTAG 3 cut(s) 44, 74, 483
SstI GAGCTC 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 127, 250
TaaI ACNGT 4 cut(s) 111, 238, 559, 674
TaiI ACGT 3 cut(s) 96, 302, 609
TaqI TCGA 3 cut(s) 18, 170, 240
TasI AATT 4 cut(s) 158, 203, 306, 543
TatI WGTACW 4 cut(s) 212, 398, 476, 488
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 2 cut(s) 255, 367
Tru1I TTAA 2 cut(s) 207, 609
Tru9I TTAA 2 cut(s) 207, 609
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 4 cut(s) 417, 437, 580, 644
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 6 cut(s) 17, 104, 117, 234, 377, 435
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 674
XapI RAATTY 2 cut(s) 203, 306
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 1 cut(s) 531
XspI CTAG 3 cut(s) 44, 74, 483
ZrmI AGTACT 3 cut(s) 400, 478, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.