Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Forward (+)

8301542 .. 8302036

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG107900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATATCGTGAAGGGAAAGTCAAGAAAGAATCTGATTAAAAAGGCGAGGCCATGCAGTAATTTAGTGAAACAAACCAGCAAAGTGTTTGGAGCACTCAGTTCATTGACGAAGAGAAAATCAAGGAGTTGCAGTACTAGAAGTAGTACCAACACTTGCAAGCGGGAGAAGAAGAAGGCCGGCCGAGTAGCTCCGGCCGGGTGTTTCTCAGTCTACGTCGGACCCGAAAAGCAACGGTTTGTTGTGAAGACGGAGTTTGCTAAGCATCCGTTGTTCAAGGTGCTGTTAGAGGATGCAGCATTGGAGTATGGGTACAAAAATGATGGTCCACTTTTGCTGCCTTGTGATGTGGGTTCGTTCCACAATGTTTTGGCAGAAATGGAGGGCAATATTGTTGAGGATATGATCAGCCCCAATAAATATTGGTGTTTGATTCAAATTTTCTTCGGTCTAGCTCGTCGTCGTCATTCAGATTCAGAAAGGAACAAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

164

Amino Acids

18.43

Weight (kDa)

9.9

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	34 - 125	7.3e-23	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	163
AcoI	YGGCCR	2 cut(s)	181, 195
AcsI	RAATTY	1 cut(s)	438
AfaI	GTAC	3 cut(s)	136, 148, 314
AgsI	TTSAA	2 cut(s)	277, 437
AluBI	AGCT	2 cut(s)	191, 455
AluI	AGCT	2 cut(s)	191, 455
Alw21I	GWGCWC	1 cut(s)	97
AoxI	GGCC	4 cut(s)	50, 177, 181, 195
ApeKI	GCWGC	2 cut(s)	296, 337
ApoI	RAATTY	1 cut(s)	438
AspS9I	GGNCC	2 cut(s)	221, 326
AsuC2I	CCSGG	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	221, 326
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	308, 324
BccI	CCATC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	3 cut(s)	138, 452, 493
BisI	GCNGC	2 cut(s)	297, 338
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	2 cut(s)	298, 339
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	2 cut(s)	221, 326
BmgT120I	GGNCC	2 cut(s)	221, 326
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	274, 283
BpiI	GAAGAC	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 296, 326
Bse118I	RCCGGY	1 cut(s)	179
BseGI	GGATG	2 cut(s)	265, 298
BseMII	CTCAG	2 cut(s)	112, 222
BseX3I	CGGCCG	2 cut(s)	181, 195
BseXI	GCAGC	2 cut(s)	308, 324
Bsh1285I	CGRYCG	2 cut(s)	184, 198
BshFI	GGCC	4 cut(s)	52, 179, 183, 197
BsiEI	CGRYCG	2 cut(s)	184, 198
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	180, 194, 198
BsnI	GGCC	4 cut(s)	52, 179, 183, 197
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	405
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	4 cut(s)	52, 179, 183, 197
BspCNI	CTCAG	2 cut(s)	111, 221
BspLI	GGNNCC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssMI	GATC	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	161, 181
BstDEI	CTNAG	3 cut(s)	98, 208, 261
BstF5I	GGATG	2 cut(s)	265, 298
BstKTI	GATC	1 cut(s)	408
BstMBI	GATC	1 cut(s)	405
BstMCI	CGRYCG	2 cut(s)	184, 198
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	308, 324
BstV2I	GAAGAC	1 cut(s)	254
BstZI	CGGCCG	2 cut(s)	181, 195
BsuRI	GGCC	4 cut(s)	52, 179, 183, 197
BtsCI	GGATG	2 cut(s)	265, 298
Cac8I	GCNNGC	2 cut(s)	161, 181
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	221, 326
Csp6I	GTAC	3 cut(s)	135, 147, 313
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	8 cut(s)	52, 179, 183, 191, 197, 411, 455, 492
CviKI_1	RGCY	8 cut(s)	52, 179, 183, 191, 197, 411, 455, 492
CviQI	GTAC	3 cut(s)	135, 147, 313
DdeI	CTNAG	3 cut(s)	98, 208, 261
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
EaeI	YGGCCR	2 cut(s)	181, 195
EagI	CGGCCG	2 cut(s)	181, 195
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EclXI	CGGCCG	2 cut(s)	181, 195
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	221, 326
Eco52I	CGGCCG	2 cut(s)	181, 195
EcoRV	GATATC	1 cut(s)	7
FaeI	CATG	1 cut(s)	57
FaiI	YATR	3 cut(s)	55, 309, 404
FatI	CATG	1 cut(s)	53
FauI	CCCGC	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	297, 338
FokI	GGATG	2 cut(s)	252, 305
FseI	GGCCGGCC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	297, 338
FspBI	CTAG	3 cut(s)	138, 452, 493
GluI	GCNGC	2 cut(s)	297, 338
HaeIII	GGCC	4 cut(s)	52, 179, 183, 197
HapII	CCGG	3 cut(s)	180, 194, 198
Hin1II	CATG	1 cut(s)	57
HinfI	GANTC	3 cut(s)	31, 433, 473
HpaII	CCGG	3 cut(s)	180, 194, 198
Hpy166II	GTNNAC	2 cut(s)	214, 329
Hpy188I	TCNGA	4 cut(s)	36, 221, 472, 478
Hpy188III	TCNNGA	2 cut(s)	10, 24
Hpy8I	GTNNAC	2 cut(s)	214, 329
Hpy99I	CGWCG	3 cut(s)	221, 462, 465
HpyAV	CCTTC	2 cut(s)	7, 169
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	4 cut(s)	57, 132, 159, 296
HpyF3I	CTNAG	3 cut(s)	98, 208, 261
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	57
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	405
LmnI	GCTCC	2 cut(s)	92, 196
LpnPI	CCDG	4 cut(s)	91, 193, 207, 211
Lsp1109I	GCAGC	2 cut(s)	308, 324
LweI	GCATC	2 cut(s)	274, 283
MaeI	CTAG	3 cut(s)	138, 452, 493
MaeII	ACGT	1 cut(s)	216
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	5 cut(s)	124, 181, 184, 259, 436
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	2 cut(s)	61, 438
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	4 cut(s)	42, 283, 376, 391
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	1 cut(s)	39
MspI	CCGG	3 cut(s)	180, 194, 198
MspR9I	CCNGG	1 cut(s)	199
NaeI	GCCGGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	405
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	223
NmeAIII	GCCGAG	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	31, 433, 473
PkrI	GCNGC	2 cut(s)	298, 339
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	221, 326
RigI	GGCCGGCC	1 cut(s)	183
RsaI	GTAC	3 cut(s)	136, 148, 314
RsaNI	GTAC	3 cut(s)	135, 147, 313
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	2 cut(s)	297, 338
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	2 cut(s)	221, 326
ScaI	AGTACT	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	4 cut(s)	193, 219, 282, 457
SfaNI	GCATC	2 cut(s)	274, 283
SinI	GGWCC	2 cut(s)	221, 326
Sse9I	AATT	2 cut(s)	61, 438
SsiI	CCGC	1 cut(s)	163
SspI	AATATT	2 cut(s)	391, 422
SspMI	CTAG	3 cut(s)	138, 452, 493
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	219
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	2 cut(s)	61, 438
TatI	WGTACW	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	31, 433, 473
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	2 cut(s)	296, 337
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	2 cut(s)	258, 266
VpaK11BI	GGWCC	2 cut(s)	221, 326
XapI	RAATTY	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	3 cut(s)	138, 452, 493
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.