Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Forward (+)

17953971 .. 17954489

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGATATCATAAAGAGAAAGTGGAAGAAGAATATGATCGCCAACGCATGGAAGAGATGTAGTTTACAAAGAGAAAGCAGCAGCAAAGTACTCAACTCATTGACTAAGAGCAAGTCATGCCACTGCAGTTCCACTACTAGGAAGAGCAAAGGCCAGGTAGCTCCGGACGGGTGTTTTTCAGTCTACGTTGGACCGCAAAGACAACGGTTTGTGGTGAAGACGGAGTTTGCAAATCATCCGTTGTTTAAGATGCTGCTGGATGATGCCGAAATGGAATACGGTTACAACTGCGACGGTCCGATTTTGCTTCCTTGTGATGTGGATTTGTTTTATAATGTGTTGGCTGAGATGGAGAGCAGTGAGGAAATTAGTACTCCTAATTGTGGGTTTGTTAAGGGTTATGGTTCGTTGATGCTTTGCAGTCCTTCTCGTCGTCTAAATTCGAGCATCAACGACGGTTATGGTGGTGCTTATAGGCTGCTTAGCCCGTTGAAAATGCTTAAGATAAACCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

173

Amino Acids

19.4

Weight (kDa)

9.11

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	16 - 115	4.9e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccB7I	CCANNNNNTGG	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	2 cut(s)	90, 373
AfiI	CCNNNNNNNGG	3 cut(s)	48, 138, 383
AflII	CTTAAG	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	4 cut(s)	78, 81, 253, 478
ApoI	RAATTY	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	191, 296
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	2 cut(s)	191, 296
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	4 cut(s)	90, 93, 240, 465
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	155
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	124
BfrI	CTTAAG	1 cut(s)	500
BisI	GCNGC	4 cut(s)	79, 82, 254, 479
BlpI	GCTNAGC	1 cut(s)	482
BlsI	GCNGC	4 cut(s)	80, 83, 255, 480
BmcAI	AGTACT	2 cut(s)	90, 373
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	2 cut(s)	191, 296
BmgT120I	GGNCC	2 cut(s)	191, 296
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	4 cut(s)	240, 253, 402, 456
BpiI	GAAGAC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 138, 383
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	235, 265
BseLI	CCNNNNNNNGG	3 cut(s)	48, 138, 383
BseMII	CTCAG	1 cut(s)	336
BseXI	GCAGC	4 cut(s)	90, 93, 240, 465
BshFI	GGCC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	3 cut(s)	48, 138, 383
BsnI	GGCC	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	36
Bsp1720I	GCTNAGC	1 cut(s)	482
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	337
BspEI	TCCGGA	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	500
BssMI	GATC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	4 cut(s)	207, 281, 296, 458
Bst6I	CTCTTC	2 cut(s)	47, 137
BstAFI	CTTAAG	1 cut(s)	500
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	105, 345, 482
BstF5I	GGATG	2 cut(s)	235, 265
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	4 cut(s)	90, 93, 240, 465
BstV2I	GAAGAC	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	235, 265
BtsI	GCAGTG	2 cut(s)	121, 364
BtsIMutI	CAGTG	2 cut(s)	121, 364
Cfr13I	GGNCC	2 cut(s)	191, 296
CpoI	CGGWCCG	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	89, 372
CspI	CGGWCCG	1 cut(s)	296
CviAII	CATG	2 cut(s)	48, 117
CviJI	RGCY	5 cut(s)	153, 161, 344, 478, 486
CviKI_1	RGCY	5 cut(s)	153, 161, 344, 478, 486
CviQI	GTAC	2 cut(s)	89, 372
DdeI	CTNAG	3 cut(s)	105, 345, 482
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	47, 137
EarI	CTCTTC	2 cut(s)	47, 137
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	191, 296
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	7
FaeI	CATG	2 cut(s)	51, 120
FaiI	YATR	8 cut(s)	11, 35, 49, 118, 333, 402, 462, 474
FatI	CATG	2 cut(s)	47, 116
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	79, 82, 254, 479
FokI	GGATG	2 cut(s)	222, 272
Fsp4HI	GCNGC	4 cut(s)	79, 82, 254, 479
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	4 cut(s)	79, 82, 254, 479
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	2 cut(s)	51, 120
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	65, 184
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	65, 184
Hpy99I	CGWCG	3 cut(s)	296, 435, 458
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	4 cut(s)	207, 281, 296, 458
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	126, 230, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	3 cut(s)	105, 345, 482
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	51, 120
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	4 cut(s)	140, 167, 177, 242
Lsp1109I	GCAGC	4 cut(s)	90, 93, 240, 465
LweI	GCATC	4 cut(s)	240, 253, 402, 456
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	5 cut(s)	37, 40, 64, 154, 229
MluCI	AATT	4 cut(s)	366, 379, 439, 512
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	1 cut(s)	355
MroI	TCCGGA	1 cut(s)	163
MseI	TTAA	4 cut(s)	246, 393, 501, 517
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	51, 120
PciSI	GCTCTTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	4 cut(s)	80, 83, 255, 480
PsiI	TTATAA	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	191, 296
PstI	CTGCAG	1 cut(s)	128
RsaI	GTAC	2 cut(s)	90, 373
RsaNI	GTAC	2 cut(s)	89, 372
Rsr2I	CGGWCCG	1 cut(s)	296
RsrII	CGGWCCG	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	4 cut(s)	246, 393, 501, 517
SatI	GCNGC	4 cut(s)	79, 82, 254, 479
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	2 cut(s)	191, 296
ScaI	AGTACT	2 cut(s)	90, 373
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	3 cut(s)	159, 163, 189
SfaNI	GCATC	4 cut(s)	240, 253, 402, 456
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	2 cut(s)	191, 296
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	4 cut(s)	366, 379, 439, 512
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	4 cut(s)	207, 281, 296, 458
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	443
TasI	AATT	4 cut(s)	366, 379, 439, 512
TatI	WGTACW	2 cut(s)	88, 371
Tru1I	TTAA	4 cut(s)	246, 393, 501, 517
Tru9I	TTAA	4 cut(s)	246, 393, 501, 517
TscAI	CASTG	2 cut(s)	128, 364
TseI	GCWGC	4 cut(s)	78, 81, 253, 478
TspGWI	ACGGA	2 cut(s)	228, 236
TspRI	CASTG	2 cut(s)	128, 364
Van91I	CCANNNNNTGG	1 cut(s)	48
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	191, 296
XapI	RAATTY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	138
ZrmI	AGTACT	2 cut(s)	90, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.