Rh7AG126200

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000824
Physical Location & Seq
Forward (+)
9915520 .. 9916077
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG126200.1

Sequence Viewer

Length: 558 bp
ATGGATATCGTGAAGGGAAAGTGGATGAAGAATCTGATCATCAAGGCTTGGAAGCGATGCAGTACTTTACCGAAACAAAGCAGCAGGAAAGGCTCTACAGCAGCCGCTTCATTGACGAGGAGCAAATCATGGAGCTCCAGTACTACTAGTAGTACTGGCACTTGCAAGCAGAAGAAGAACAAGGCCAAGACATGCCAAGTCGCTCCAATTGGGTGTTCTACGGTCTATGTTGGACCCGAAAAGCAGCGATTTGTGCTGAGGATAGAGTACGTTAATCATCCATTGTTCAAGATGCTGTTGGAGGATGCAGCATTGGAGTATGGGTACAAAAATGACGGTCCGATATTTCTTCCTTGCCATGTGGATCTGTTCTACAATGTTATGGCAGAGATTGAGACCAATGATATCGATGAGGATAGGATCAGTGCTCCCAGTAATTGTTCTCCGATAATCTTCAGTCCAGCTCGTCGTAGAAATTGTGCCAGCAACAGAGGTTACGGTGGTGCTTATAGGGTACTTACTCCAACAACATCGTCATCATCAATGGTGCTTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

185

Amino Acids

20.52

Weight (kDa)

9.59

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 43 - 129 4.4e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 105
AclWI GGATC 2 cut(s) 372, 428
AcuI CTGAAG 1 cut(s) 439
AfaI GTAC 6 cut(s) 64, 142, 154, 269, 326, 516
AgsI TTSAA 1 cut(s) 289
AhlI ACTAGT 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 2 cut(s) 135, 464
AluI AGCT 2 cut(s) 135, 464
Alw21I GWGCWC 2 cut(s) 137, 430
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 372, 428
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 4 cut(s) 81, 101, 244, 308
AspS9I GGNCC 2 cut(s) 233, 338
AvaII GGWCC 2 cut(s) 233, 338
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 2 cut(s) 137, 430
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 4 cut(s) 93, 113, 256, 320
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 389
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 2 cut(s) 147, 556
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 5 cut(s) 82, 102, 105, 245, 309
BlsI GCNGC 5 cut(s) 83, 103, 106, 246, 310
BmcAI AGTACT 3 cut(s) 64, 142, 154
Bme18I GGWCC 2 cut(s) 233, 338
BmgT120I GGNCC 2 cut(s) 233, 338
BmiI GGNNCC 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 3 cut(s) 47, 282, 295
BmuI ACTGGG 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 389
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 308, 338
Bse1I ACTGG 3 cut(s) 138, 160, 432
BseCI ATCGAT 1 cut(s) 408
BseGI GGATG 3 cut(s) 30, 277, 310
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 3 cut(s) 138, 160, 432
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 4 cut(s) 93, 113, 256, 320
BshFI GGCC 1 cut(s) 185
BshVI ATCGAT 1 cut(s) 408
BsiHKAI GWGCWC 2 cut(s) 137, 430
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 137, 430
Bsp143I GATC 3 cut(s) 36, 364, 420
BspACI CCGC 1 cut(s) 105
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 249
BspDI ATCGAT 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 2 cut(s) 372, 428
BspTNI GGTCTC 1 cut(s) 389
BsrI ACTGG 3 cut(s) 138, 160, 432
BssMI GATC 3 cut(s) 36, 364, 420
Bst4CI ACNGT 3 cut(s) 223, 338, 500
BstC8I GCNNGC 2 cut(s) 167, 484
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 3 cut(s) 30, 277, 310
BstKTI GATC 3 cut(s) 39, 367, 423
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 3 cut(s) 36, 364, 420
BstMWI GCNNNNNNNGC 2 cut(s) 90, 253
BstNSI RCATGY 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 93, 113, 256, 320
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
Bsu15I ATCGAT 1 cut(s) 408
BsuRI GGCC 1 cut(s) 185
BsuTUI ATCGAT 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 3 cut(s) 30, 277, 310
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 2 cut(s) 167, 484
Cfr13I GGNCC 2 cut(s) 233, 338
ClaI ATCGAT 1 cut(s) 408
CpoI CGGWCCG 1 cut(s) 338
Csp6I GTAC 6 cut(s) 63, 141, 153, 268, 325, 515
CspI CGGWCCG 1 cut(s) 338
CviAII CATG 3 cut(s) 129, 192, 359
CviJI RGCY 6 cut(s) 47, 93, 104, 135, 185, 464
CviKI_1 RGCY 6 cut(s) 47, 93, 104, 135, 185, 464
CviQI GTAC 6 cut(s) 63, 141, 153, 268, 325, 515
DdeI CTNAG 1 cut(s) 257
DpnI GATC 3 cut(s) 38, 366, 422
DpnII GATC 3 cut(s) 36, 364, 420
Ecl136II GAGCTC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 389
Eco32I GATATC 2 cut(s) 7, 406
Eco47I GGWCC 2 cut(s) 233, 338
Eco53kI GAGCTC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 439
EcoICRI GAGCTC 1 cut(s) 135
EcoRV GATATC 2 cut(s) 7, 406
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 3 cut(s) 132, 195, 362
FaiI YATR 7 cut(s) 130, 193, 228, 321, 360, 383, 510
FatI CATG 3 cut(s) 128, 191, 358
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 5 cut(s) 82, 102, 105, 245, 309
FokI GGATG 3 cut(s) 37, 264, 317
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 5 cut(s) 82, 102, 105, 245, 309
FspBI CTAG 2 cut(s) 147, 556
GluI GCNGC 5 cut(s) 82, 102, 105, 245, 309
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 1 cut(s) 185
Hin1II CATG 3 cut(s) 132, 195, 362
HinfI GANTC 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 36, 342, 447
Hpy188III TCNNGA 2 cut(s) 10, 289
Hpy99I CGWCG 1 cut(s) 471
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 3 cut(s) 223, 338, 500
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 60, 165, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 253
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 3 cut(s) 132, 195, 362
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 3 cut(s) 36, 364, 420
LmnI GCTCC 5 cut(s) 120, 132, 140, 208, 433
LpnPI CCDG 6 cut(s) 70, 141, 151, 445, 474, 496
Lsp1109I GCAGC 4 cut(s) 93, 113, 256, 320
LweI GCATC 3 cut(s) 47, 282, 295
MaeI CTAG 2 cut(s) 147, 556
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 494
MalI GATC 3 cut(s) 38, 366, 422
MboI GATC 3 cut(s) 36, 364, 420
MboII GAAGA 5 cut(s) 40, 184, 187, 341, 445
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 137, 430
MluCI AATT 3 cut(s) 207, 436, 475
MmeI TCCRAC 3 cut(s) 211, 279, 548
MnlI CCTC 5 cut(s) 111, 252, 295, 406, 485
MseI TTAA 1 cut(s) 273
MunI CAATTG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 90, 253
NdeII GATC 3 cut(s) 36, 364, 420
NlaIII CATG 3 cut(s) 132, 195, 362
NlaIV GGNNCC 1 cut(s) 235
NspI RCATGY 1 cut(s) 195
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 5 cut(s) 83, 103, 106, 246, 310
Psp124BI GAGCTC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 233, 338
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 6 cut(s) 64, 142, 154, 269, 326, 516
RsaNI GTAC 6 cut(s) 63, 141, 153, 268, 325, 515
Rsr2I CGGWCCG 1 cut(s) 338
RsrII CGGWCCG 1 cut(s) 338
SacI GAGCTC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 5 cut(s) 82, 102, 105, 245, 309
Sau3AI GATC 3 cut(s) 36, 364, 420
Sau96I GGNCC 2 cut(s) 233, 338
ScaI AGTACT 3 cut(s) 64, 142, 154
SduI GDGCHC 2 cut(s) 137, 430
SetI ASST 5 cut(s) 137, 273, 466, 496, 557
SfaNI GCATC 3 cut(s) 47, 282, 295
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 2 cut(s) 233, 338
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 3 cut(s) 207, 436, 475
SsiI CCGC 1 cut(s) 105
SspMI CTAG 2 cut(s) 147, 556
SstI GAGCTC 1 cut(s) 137
TaaI ACNGT 3 cut(s) 223, 338, 500
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 408
TasI AATT 3 cut(s) 207, 436, 475
TatI WGTACW 3 cut(s) 62, 140, 152
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 430
TseI GCWGC 4 cut(s) 81, 101, 244, 308
TspDTI ATGAA 2 cut(s) 41, 99
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 233, 338
XceI RCATGY 1 cut(s) 195
XspI CTAG 2 cut(s) 147, 556
ZrmI AGTACT 3 cut(s) 64, 142, 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.