Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000608.1

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Forward (+)

53409 .. 53966

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000608.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgaagaatctgatcatcaaggcgtggaagcgatgcagtactttacctaaacaaagcagcacggaaggctctacagtagccgcttcattgacaagaagcaaatcatggagctccagtactactagtagtactggcacttgcaagcagaagaagaacaagggcaaggcatgccaagtcgctccggctgggtgtttcacagtctacgttggacccgaaaagcagcgatttgtggtgaggatggagtttcttaatcatccattgttcaggatgctgttggaggatgcagcattggagtatgggtacaaaagtgacggtccgatattgcttccttgccatgtggatctgttctgcaatgttatggcagagattgagagcaatgatattaatgagtataggatcagtgctcccagtaattgttctccgacaaacttcagtccggctcgtcgtagaaattgtgccagcaacagaggttacggtggtgcttatagggtatacttactccaacatcgtcatcatcaatggtggttacctagatttgattttaacatatatacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

185

Amino Acids

20.98

Weight (kDa)

9.51

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	201, 492
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	348, 404
AcuI	CTGAAG	1 cut(s)	415
AfaI	GTAC	4 cut(s)	40, 118, 130, 302
AhlI	ACTAGT	1 cut(s)	122
AluBI	AGCT	1 cut(s)	111
AluI	AGCT	1 cut(s)	111
Alw21I	GWGCWC	2 cut(s)	113, 406
AlwI	GGATC	2 cut(s)	348, 404
ApeKI	GCWGC	3 cut(s)	57, 220, 284
AseI	ATTAAT	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	209, 314
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	209, 314
BaeI	ACNNNNGTAYC	2 cut(s)	292, 325
BanII	GRGCYC	1 cut(s)	113
Bbv12I	GWGCWC	2 cut(s)	113, 406
BbvI	GCAGC	3 cut(s)	69, 232, 296
BccI	CCATC	1 cut(s)	232
BclI	TGATCA	1 cut(s)	12
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	2 cut(s)	123, 531
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	4 cut(s)	58, 81, 221, 285
BlsI	GCNGC	4 cut(s)	59, 82, 222, 286
BmcAI	AGTACT	3 cut(s)	40, 118, 130
Bme18I	GGWCC	2 cut(s)	209, 314
BmgT120I	GGNCC	2 cut(s)	209, 314
BmiI	GGNNCC	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	23, 258, 271
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	555
BsaXI	ACNNNNNCTCC	4 cut(s)	100, 130, 284, 314
Bse1I	ACTGG	3 cut(s)	114, 136, 408
Bse3DI	GCAATG	2 cut(s)	358, 382
BseGI	GGATG	4 cut(s)	243, 253, 273, 286
BseMI	GCAATG	2 cut(s)	358, 382
BseNI	ACTGG	3 cut(s)	114, 136, 408
BseXI	GCAGC	3 cut(s)	69, 232, 296
BseYI	CCCAGC	1 cut(s)	185
BsiHKAI	GWGCWC	2 cut(s)	113, 406
BsiSI	CCGG	2 cut(s)	182, 437
Bsp1286I	GDGCHC	2 cut(s)	113, 406
Bsp143I	GATC	3 cut(s)	12, 340, 396
BspACI	CCGC	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	348, 404
BsrDI	GCAATG	2 cut(s)	358, 382
BsrI	ACTGG	3 cut(s)	114, 136, 408
BssMI	GATC	3 cut(s)	12, 340, 396
BssNAI	GTATAC	1 cut(s)	493
Bst1107I	GTATAC	1 cut(s)	493
Bst4CI	ACNGT	4 cut(s)	76, 199, 314, 476
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	143, 169, 460
BstEII	GGTNACC	1 cut(s)	525
BstF5I	GGATG	4 cut(s)	243, 253, 273, 286
BstKTI	GATC	3 cut(s)	15, 343, 399
BstMBI	GATC	3 cut(s)	12, 340, 396
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 168
BstNSI	RCATGY	1 cut(s)	171
BstPI	GGTNACC	1 cut(s)	525
BstSFI	CTRYAG	1 cut(s)	72
BstSNI	TACGTA	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	69, 232, 296
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BstZ17I	GTATAC	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	243, 253, 273, 286
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	3 cut(s)	143, 169, 460
Cfr13I	GGNCC	2 cut(s)	209, 314
CpoI	CGGWCCG	1 cut(s)	314
Csp6I	GTAC	4 cut(s)	39, 117, 129, 301
CspI	CGGWCCG	1 cut(s)	314
CviAII	CATG	3 cut(s)	105, 168, 335
CviJI	RGCY	5 cut(s)	69, 80, 111, 185, 440
CviKI_1	RGCY	5 cut(s)	69, 80, 111, 185, 440
CviQI	GTAC	4 cut(s)	39, 117, 129, 301
DpnI	GATC	3 cut(s)	14, 342, 398
DpnII	GATC	3 cut(s)	12, 340, 396
Ecl136II	GAGCTC	1 cut(s)	111
Eco105I	TACGTA	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	209, 314
Eco53kI	GAGCTC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	415
Eco91I	GGTNACC	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	113
FaeI	CATG	3 cut(s)	108, 171, 338
FatI	CATG	3 cut(s)	104, 167, 334
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	2 cut(s)	201, 492
Fnu4HI	GCNGC	4 cut(s)	58, 81, 221, 285
FokI	GGATG	4 cut(s)	240, 250, 280, 293
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	4 cut(s)	58, 81, 221, 285
FspBI	CTAG	2 cut(s)	123, 531
GluI	GCNGC	4 cut(s)	58, 81, 221, 285
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	97
HapII	CCGG	2 cut(s)	182, 437
Hin1II	CATG	3 cut(s)	108, 171, 338
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	182, 437
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	202, 493
Hpy188I	TCNGA	3 cut(s)	12, 318, 423
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	2 cut(s)	202, 493
Hpy99I	CGWCG	1 cut(s)	447
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	4 cut(s)	76, 199, 314, 476
HpyCH4IV	ACGT	2 cut(s)	204, 554
HpyCH4V	TGCA	4 cut(s)	36, 141, 284, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 168
HpySE526I	ACGT	2 cut(s)	204, 554
Hsp92II	CATG	3 cut(s)	108, 171, 338
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 340, 396
LmnI	GCTCC	4 cut(s)	108, 116, 184, 409
LpnPI	CCDG	8 cut(s)	117, 127, 171, 195, 250, 421, 450, 472
Lsp1109I	GCAGC	3 cut(s)	69, 232, 296
LweI	GCATC	3 cut(s)	23, 258, 271
MaeI	CTAG	2 cut(s)	123, 531
MaeII	ACGT	2 cut(s)	204, 554
MaeIII	GTNAC	3 cut(s)	308, 470, 525
MalI	GATC	3 cut(s)	14, 342, 398
MboI	GATC	3 cut(s)	12, 340, 396
MboII	GAAGA	3 cut(s)	16, 160, 163
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	113, 406
MluCI	AATT	2 cut(s)	412, 451
MmeI	TCCRAC	4 cut(s)	187, 255, 446, 526
MnlI	CCTC	3 cut(s)	228, 271, 461
MseI	TTAA	3 cut(s)	249, 384, 543
MspI	CCGG	2 cut(s)	182, 437
MwoI	GCNNNNNNNGC	2 cut(s)	66, 168
NdeII	GATC	3 cut(s)	12, 340, 396
NlaIII	CATG	3 cut(s)	108, 171, 338
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	4 cut(s)	59, 82, 222, 286
Ppu21I	YACGTR	1 cut(s)	555
PshBI	ATTAAT	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	525
PspFI	CCCAGC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	209, 314
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	4 cut(s)	40, 118, 130, 302
RsaNI	GTAC	4 cut(s)	39, 117, 129, 301
Rsr2I	CGGWCCG	1 cut(s)	314
RsrII	CGGWCCG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	249, 384, 543
SatI	GCNGC	4 cut(s)	58, 81, 221, 285
Sau3AI	GATC	3 cut(s)	12, 340, 396
Sau96I	GGNCC	2 cut(s)	209, 314
ScaI	AGTACT	3 cut(s)	40, 118, 130
SduI	GDGCHC	2 cut(s)	113, 406
SetI	ASST	6 cut(s)	49, 113, 207, 472, 532, 557
SfaNI	GCATC	3 cut(s)	23, 258, 271
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	209, 314
SnaBI	TACGTA	1 cut(s)	555
SpeI	ACTAGT	1 cut(s)	122
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	2 cut(s)	412, 451
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	2 cut(s)	123, 531
SstI	GAGCTC	1 cut(s)	113
TaaI	ACNGT	4 cut(s)	76, 199, 314, 476
TaiI	ACGT	2 cut(s)	207, 557
TasI	AATT	2 cut(s)	412, 451
TatI	WGTACW	3 cut(s)	38, 116, 128
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	3 cut(s)	249, 384, 543
Tru9I	TTAA	3 cut(s)	249, 384, 543
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	57, 220, 284
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	17, 75
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	2 cut(s)	209, 314
VspI	ATTAAT	1 cut(s)	384
XceI	RCATGY	1 cut(s)	171
XmiI	GTMKAC	2 cut(s)	201, 492
XspI	CTAG	2 cut(s)	123, 531
ZrmI	AGTACT	3 cut(s)	40, 118, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.