Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

58805641 .. 58806189

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGATATCGTGAAGGGAAAGTGGACGAAGAATTTGATCATCAAGGCGTGGAAGCGATGCAGTACTTTACCGAAACAAAGCAGCAGGAAAGGCTCTACAGCAGCCGCTTCATTGACAAGAAGCAAATCATGGAGCTCCAGTACTACTAGTAATACTGGCACTTGCAAGCAGAAGAAGAACAAGGCCAAGACATGCCAAGTCGCTCCAGTTGGGTGTTTCACGGTCTATGTTGGACCCGAAAAGCAGCGATTTGTGGTGAGGATGGAGTATGTTAATCATCCATTGTTCAAGATGCTGCTGGAGGATGCAGCATTGGAGTATGGGTACAAAAATGACGGTCCGATATTGCTTCCTTGCCATGTGGATCTTTTCTGCAATGTTATGGCGGAGATGGAGAGCAATGATATCGATGAGGATAGGATCAGTGCTCCCAGTAATTGTTCTCCCATAATCTTCAGTCCAGCTCGTCGTGCCAGTAACAGAGGTTACGGTGGTGCTTATAGGGTACTTACTCCAACATCATCGTCATCATCAATGGTGGTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

182

Amino Acids

20.07

Weight (kDa)

9.53

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	43 - 129	2.4e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 386
AclWI	GGATC	2 cut(s)	372, 428
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	439
AfaI	GTAC	4 cut(s)	64, 142, 326, 507
AgsI	TTSAA	1 cut(s)	289
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	2 cut(s)	135, 464
AluI	AGCT	2 cut(s)	135, 464
Alw21I	GWGCWC	2 cut(s)	137, 430
AlwI	GGATC	2 cut(s)	372, 428
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	5 cut(s)	81, 101, 244, 295, 308
ApoI	RAATTY	1 cut(s)	31
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AspS9I	GGNCC	2 cut(s)	233, 338
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	233, 338
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	137, 430
BbvI	GCAGC	5 cut(s)	93, 113, 256, 282, 320
BccI	CCATC	2 cut(s)	256, 385
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BclI	TGATCA	1 cut(s)	36
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	147, 547
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	6 cut(s)	82, 102, 105, 245, 296, 309
BlsI	GCNGC	6 cut(s)	83, 103, 106, 246, 297, 310
BmcAI	AGTACT	2 cut(s)	64, 142
Bme18I	GGWCC	2 cut(s)	233, 338
BmgT120I	GGNCC	2 cut(s)	233, 338
BmiI	GGNNCC	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	3 cut(s)	47, 282, 295
BmuI	ACTGGG	1 cut(s)	426
BpmI	CTGGAG	3 cut(s)	121, 189, 320
Bsa29I	ATCGAT	1 cut(s)	408
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 308, 338
Bse1I	ACTGG	5 cut(s)	138, 160, 206, 432, 474
Bse3DI	GCAATG	2 cut(s)	382, 406
BseCI	ATCGAT	1 cut(s)	408
BseGI	GGATG	3 cut(s)	267, 277, 310
BseMI	GCAATG	2 cut(s)	382, 406
BseNI	ACTGG	5 cut(s)	138, 160, 206, 432, 474
BseXI	GCAGC	5 cut(s)	93, 113, 256, 282, 320
BshFI	GGCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	408
BsiHKAI	GWGCWC	2 cut(s)	137, 430
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	137, 430
Bsp143I	GATC	3 cut(s)	36, 364, 420
BspACI	CCGC	2 cut(s)	105, 386
BspANI	GGCC	1 cut(s)	185
BspDI	ATCGAT	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	372, 428
BsrDI	GCAATG	2 cut(s)	382, 406
BsrI	ACTGG	5 cut(s)	138, 160, 206, 432, 474
BssMI	GATC	3 cut(s)	36, 364, 420
Bst4CI	ACNGT	3 cut(s)	223, 338, 491
BstC8I	GCNNGC	1 cut(s)	167
BstEII	GGTNACC	1 cut(s)	541
BstF5I	GGATG	3 cut(s)	267, 277, 310
BstKTI	GATC	3 cut(s)	39, 367, 423
BstMBI	GATC	3 cut(s)	36, 364, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 470
BstNSI	RCATGY	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	5 cut(s)	93, 113, 256, 282, 320
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	267, 277, 310
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	233, 338
ClaI	ATCGAT	1 cut(s)	408
CpoI	CGGWCCG	1 cut(s)	338
Csp6I	GTAC	4 cut(s)	63, 141, 325, 506
CspI	CGGWCCG	1 cut(s)	338
CviAII	CATG	3 cut(s)	129, 192, 359
CviJI	RGCY	5 cut(s)	93, 104, 135, 185, 464
CviKI_1	RGCY	5 cut(s)	93, 104, 135, 185, 464
CviQI	GTAC	4 cut(s)	63, 141, 325, 506
DpnI	GATC	3 cut(s)	38, 366, 422
DpnII	GATC	3 cut(s)	36, 364, 420
EciI	GGCGGA	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	2 cut(s)	7, 406
Eco47I	GGWCC	2 cut(s)	233, 338
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	439
Eco91I	GGTNACC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	135
EcoO65I	GGTNACC	1 cut(s)	541
EcoRV	GATATC	2 cut(s)	7, 406
EcoT38I	GRGCYC	1 cut(s)	137
FaeI	CATG	3 cut(s)	132, 195, 362
FaiI	YATR	9 cut(s)	130, 193, 228, 270, 321, 360, 383, 449, 501
FatI	CATG	3 cut(s)	128, 191, 358
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	6 cut(s)	82, 102, 105, 245, 296, 309
FokI	GGATG	3 cut(s)	264, 274, 317
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	6 cut(s)	82, 102, 105, 245, 296, 309
FspBI	CTAG	2 cut(s)	147, 547
GluI	GCNGC	6 cut(s)	82, 102, 105, 245, 296, 309
GsuI	CTGGAG	3 cut(s)	121, 189, 320
HaeIII	GGCC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	132, 195, 362
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	10, 289
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	3 cut(s)	223, 338, 491
HpyCH4V	TGCA	4 cut(s)	60, 165, 308, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 470
Hsp92II	CATG	3 cut(s)	132, 195, 362
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	36, 364, 420
LmnI	GCTCC	4 cut(s)	132, 140, 208, 433
LpnPI	CCDG	8 cut(s)	70, 141, 151, 219, 284, 445, 474, 487
Lsp1109I	GCAGC	5 cut(s)	93, 113, 256, 282, 320
LweI	GCATC	3 cut(s)	47, 282, 295
MaeI	CTAG	2 cut(s)	147, 547
MaeIII	GTNAC	3 cut(s)	476, 485, 541
MalI	GATC	3 cut(s)	38, 366, 422
MboI	GATC	3 cut(s)	36, 364, 420
MboII	GAAGA	4 cut(s)	40, 184, 187, 445
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	137, 430
MluCI	AATT	2 cut(s)	31, 436
MmeI	TCCRAC	2 cut(s)	211, 539
MnlI	CCTC	4 cut(s)	252, 295, 406, 476
MseI	TTAA	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	90, 470
NdeII	GATC	3 cut(s)	36, 364, 420
NlaIII	CATG	3 cut(s)	132, 195, 362
NlaIV	GGNNCC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	195
PkrI	GCNGC	6 cut(s)	83, 103, 106, 246, 297, 310
Psp124BI	GAGCTC	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	541
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	233, 338
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	4 cut(s)	64, 142, 326, 507
RsaNI	GTAC	4 cut(s)	63, 141, 325, 506
Rsr2I	CGGWCCG	1 cut(s)	338
RsrII	CGGWCCG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	6 cut(s)	82, 102, 105, 245, 296, 309
Sau3AI	GATC	3 cut(s)	36, 364, 420
Sau96I	GGNCC	2 cut(s)	233, 338
ScaI	AGTACT	2 cut(s)	64, 142
SduI	GDGCHC	2 cut(s)	137, 430
SetI	ASST	4 cut(s)	137, 466, 487, 548
SfaNI	GCATC	3 cut(s)	47, 282, 295
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	2 cut(s)	233, 338
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	2 cut(s)	31, 436
SsiI	CCGC	2 cut(s)	105, 386
SspMI	CTAG	2 cut(s)	147, 547
SstI	GAGCTC	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	223, 338, 491
TaqI	TCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	31, 436
TatI	WGTACW	2 cut(s)	62, 140
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	5 cut(s)	81, 101, 244, 295, 308
TspDTI	ATGAA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	2 cut(s)	233, 338
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	1 cut(s)	195
XspI	CTAG	2 cut(s)	147, 547
ZrmI	AGTACT	2 cut(s)	64, 142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.