FvH4_4g23230

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000824
Physical Location & Seq
Forward (+)
25784110 .. 25785352
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23230.t1

Sequence Viewer

Length: 516 bp
ATGAAGGTGAAAGGTAAGAAGGGCTTGATAACTAAAACATGGGAGCGTTGCAAATCCATCGGCCGCAAGAGTAGTATTACTAGCACTGGCACTGCTACTTCCTCTCCGGCCGTACCTGCTCTTACGAAGAAGAGCAAATCATGTCCGCACATCGTCCTTTCCATGACGGATGATGATGATGATCGTCGTCGTCACCGTCGCCAGGTGGCTCCAGAAGGCTGCTTCTCCGTCTACGTTGGATCTGAAAAGCAAAGGTTTGTGGTGAAAACTGAGTACGCAAATCATCCCTTGTTCAAGTTGCTGCTTGAGGAAGCCGAGTCTGAATTCGGGTACCATAGTAAAGGTCCTCTCGTGCTTCCTTGTGACGTTCAAGTGTTCTACAAGGTGTTGCTGGAAATGGAGGATTGCGGTGGTGATGGTGTTGATAAGGTTTCTCGAGGTTGCGGATTTGCTAAGCGTTATGGGTCTTATCATCTTCTCAGCCCGTCTCGTATGGTTGCCATTAATCAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

9.32

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 50 - 130 1e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
Acc65I GGTACC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 231
AciI CCGC 4 cut(s) 64, 146, 408, 444
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 2 cut(s) 61, 108
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 3 cut(s) 114, 275, 332
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 2 cut(s) 295, 371
AjnI CCWGG 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 492
AlwI GGATC 1 cut(s) 247
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 2 cut(s) 61, 108
ApeKI GCWGC 2 cut(s) 219, 301
ApoI RAATTY 1 cut(s) 323
AseI ATTAAT 1 cut(s) 504
Asp718I GGTACC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 4 cut(s) 19, 185, 274, 425
AvaI CYCGRG 1 cut(s) 435
AvaII GGWCC 1 cut(s) 344
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BanI GGYRCC 1 cut(s) 330
BauI CACGAG 1 cut(s) 350
BbvI GCAGC 2 cut(s) 206, 288
BccI CCATC 2 cut(s) 65, 410
BceAI ACGGC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 2 cut(s) 81, 514
BfuAI ACCTGC 1 cut(s) 124
BisI GCNGC 3 cut(s) 64, 220, 302
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 3 cut(s) 65, 221, 303
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 344
BmeT110I CYCGRG 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 210, 332
BmrFI CCNGG 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 203
BseGI GGATG 2 cut(s) 175, 283
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 261, 493
BseNI ACTGG 1 cut(s) 91
BseX3I CGGCCG 2 cut(s) 61, 108
BseXI GCAGC 2 cut(s) 206, 288
Bsh1285I CGRYCG 2 cut(s) 64, 111
BshFI GGCC 2 cut(s) 63, 110
BshNI GGYRCC 1 cut(s) 330
BsiEI CGRYCG 2 cut(s) 64, 111
BsiHKCI CYCGRG 1 cut(s) 435
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 492
BsmBI CGTCTC 1 cut(s) 492
BsnI GGCC 2 cut(s) 63, 110
BsoBI CYCGRG 1 cut(s) 435
Bsp143I GATC 2 cut(s) 181, 239
Bsp1720I GCTNAGC 1 cut(s) 453
BspACI CCGC 4 cut(s) 64, 146, 408, 444
BspANI GGCC 2 cut(s) 63, 110
BspCNI CTCAG 2 cut(s) 262, 492
BspLI GGNNCC 2 cut(s) 210, 332
BspMI ACCTGC 1 cut(s) 124
BspPI GGATC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 330
BsrI ACTGG 1 cut(s) 91
BssMI GATC 2 cut(s) 181, 239
BssSI CACGAG 1 cut(s) 350
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 125
BstDEI CTNAG 3 cut(s) 270, 453, 479
BstF5I GGATG 2 cut(s) 175, 283
BstKTI GATC 2 cut(s) 184, 242
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 2 cut(s) 181, 239
BstMCI CGRYCG 2 cut(s) 64, 111
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 206, 288
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BstZI CGGCCG 2 cut(s) 61, 108
BsuRI GGCC 2 cut(s) 63, 110
BtsCI GGATG 2 cut(s) 175, 283
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 84, 90
BveI ACCTGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 3 cut(s) 113, 274, 331
CviAII CATG 3 cut(s) 39, 141, 163
CviJI RGCY 7 cut(s) 24, 63, 110, 209, 219, 314, 483
CviKI_1 RGCY 7 cut(s) 24, 63, 110, 209, 219, 314, 483
CviQI GTAC 3 cut(s) 113, 274, 331
DdeI CTNAG 3 cut(s) 270, 453, 479
DpnI GATC 2 cut(s) 183, 241
DpnII GATC 2 cut(s) 181, 239
EaeI YGGCCR 2 cut(s) 61, 108
EagI CGGCCG 2 cut(s) 61, 108
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EclXI CGGCCG 2 cut(s) 61, 108
Eco47I GGWCC 1 cut(s) 344
Eco52I CGGCCG 2 cut(s) 61, 108
Eco88I CYCGRG 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 3 cut(s) 42, 144, 166
FaiI YATR 6 cut(s) 40, 142, 164, 336, 462, 494
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 3 cut(s) 38, 140, 162
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 64, 220, 302
FokI GGATG 2 cut(s) 182, 270
Fsp4HI GCNGC 3 cut(s) 64, 220, 302
FspBI CTAG 2 cut(s) 81, 514
GluI GCNGC 3 cut(s) 64, 220, 302
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 2 cut(s) 63, 110
HapII CCGG 1 cut(s) 107
Hin1II CATG 3 cut(s) 42, 144, 166
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 107
HphI GGTGA 4 cut(s) 19, 185, 274, 425
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 244, 322
Hpy188III TCNNGA 2 cut(s) 212, 435
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 3 cut(s) 189, 192, 201
HpyAV CCTTC 2 cut(s) 13, 209
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 2 cut(s) 234, 366
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 3 cut(s) 270, 453, 479
HpySE526I ACGT 2 cut(s) 234, 366
Hsp92II CATG 3 cut(s) 42, 144, 166
KpnI GGTACC 1 cut(s) 334
Kzo9I GATC 2 cut(s) 181, 239
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 43, 214
LpnPI CCDG 7 cut(s) 72, 120, 129, 188, 215, 225, 377
Lsp1109I GCAGC 2 cut(s) 206, 288
MaeI CTAG 2 cut(s) 81, 514
MaeII ACGT 2 cut(s) 234, 366
MaeIII GTNAC 2 cut(s) 191, 362
MalI GATC 2 cut(s) 183, 241
MboI GATC 2 cut(s) 181, 239
MboII GAAGA 3 cut(s) 139, 142, 467
MflI RGATCY 1 cut(s) 239
MluCI AATT 1 cut(s) 323
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 5 cut(s) 112, 301, 357, 394, 431
MseI TTAA 1 cut(s) 504
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 2 cut(s) 181, 239
NlaIII CATG 3 cut(s) 42, 144, 166
NlaIV GGNNCC 2 cut(s) 210, 332
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 191, 362
PaeR7I CTCGAG 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PkrI GCNGC 3 cut(s) 65, 221, 303
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 344
PshBI ATTAAT 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 210, 332
PspPI GGNCC 1 cut(s) 344
PspPPI RGGWCCY 1 cut(s) 344
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 3 cut(s) 114, 275, 332
RsaNI GTAC 3 cut(s) 113, 274, 331
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 3 cut(s) 64, 220, 302
Sau3AI GATC 2 cut(s) 181, 239
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 203
Sfr274I CTCGAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 305, 435
SmoI CTYRAG 2 cut(s) 305, 435
Sse9I AATT 1 cut(s) 323
SsiI CCGC 4 cut(s) 64, 146, 408, 444
SspMI CTAG 2 cut(s) 81, 514
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 2 cut(s) 237, 369
TaqI TCGA 1 cut(s) 436
TasI AATT 1 cut(s) 323
TauI GCSGC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 91, 97
TseFI GTSAC 2 cut(s) 191, 362
TseI GCWGC 2 cut(s) 219, 301
Tsp45I GTSAC 2 cut(s) 191, 362
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 182, 217
TspRI CASTG 2 cut(s) 91, 97
VpaK11BI GGWCC 1 cut(s) 344
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 2 cut(s) 81, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.