Rorug06G0498400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000824
Physical Location & Seq
Reverse (-)
61434411 .. 61436495
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0498400.1

Sequence Viewer

Length: 1347 bp
ATGGGTGCTTCAGGAAAATGGGTGAAATCCCTTATAGGTTTCAAAAAACCCGACAAAGATGACCAAGAAAAGTTGAGTGGGAAGAACAAGAAATGGAAGCTATGGAGGAATTCATCAGGGGATTTTGGGTCTTCTTGGAAAGGATTCAAAGGGAATCACAGGGCTGCTTCTGAAGGGTCTGATTCACCGAGAAGGGCTGAAGCCTACACTGCTGCAGTGGCTACAGTGGTTCGAGCTCACCCTAGAGATTTCAGAGTTGTCAGGCAAGAATGGGCCGCTATCAGAATCCAAACCGCTTTCCGAGGCTTCCTGGCAAGAAGGGCTTTGAAGGCGTTGAGAGGAATTGTGAGGCTTCAAGCTCTGGTTCGGGGAAGACAGGTGAGGAAGCAAGCGGCTGTAACACTGAGGTGCATGCAAGCTCTCGTTCGAGTTCAGGCACGTGTCAGGGCTCGCCGCGTGCGAATGTCCATTGAAGGCCAAGCTGTGCAGAACATGCTCAATGAGCGCCGCACCCAAGCTGATATCTTAAAAGAAGCTGAGGAAGGGTGGTGTGATAGCAAGGGAACAATAGATGATGTTAAAGCAAAGATTCAAATGAGGCAAGAAGGAGCCTTTAAAAGGGAGAGAGCAATTGCTTACTCTCTTGCTCAGAAGCAATGGAGATCAACCCCAGATTCGAATTCACGCATCAATTCCTCAGCGTACTCTCTCAATAAGAACAACGAATTCGACAAGAATAGCTGGGGATGGAGTTGGCTAGAGCGCTGGATGTCAGCTAAGCCATGGGAGACTAGGTTAATGGAACAATCCAACAGTGACCCATCTGAGATCACACCTCTTCCAAAGAAATGTTCAGATCCTTTTGTTGGCATTGGCAAACATTCGAAATCTTCAGAGCCACCATGCTCAGTCAAAGTGAGAAGGAACAATGTTACTACTAGGATTTCTGCTAAGCCTCCCCACATTGGGCAAGTGACTACTCGGTCATCTTCAAGCCCGAGTTCAGAATTTCAGTACGATGACAGCCCTGGCTCATCTTCACTTACATCAACAACACCGGTTTCTGGAAACACCGGATTGGCTTCGGATAGAACAGATGAGAGCAGTAACTTTAGGCCAAGTTACATGAACCTGACCGAGTCAACTAAGGCAAAGCAGAAAGCAGCAAGTTATCAATCTCACAGAACAAGGCAATCCATGGATGAGTTTCAGTTTCTCAAGAGGTCTGGGGCTTTCTCTAATGGGGATTCCAAAAGTAGTGCTGGTTCTGAGCCTTCATCAGTCAACTTCTCAAAGCCGCTTGGCATGCCAACCCGCTTGGATAAGAACTCTTTGAAACCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

448

Amino Acids

50.22

Weight (kDa)

10.46

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 982
AccII CGCG 1 cut(s) 456
AciI CCGC 7 cut(s) 276, 294, 392, 454, 508, 1298, 1315
AclWI GGATC 1 cut(s) 851
AcsI RAATTY 4 cut(s) 109, 679, 725, 1007
AcuI CTGAAG 3 cut(s) 192, 219, 876
AcvI CACGTG 1 cut(s) 440
AfaI GTAC 2 cut(s) 704, 1016
AfeI AGCGCT 1 cut(s) 764
AfiI CCNNNNNNNGG 5 cut(s) 618, 866, 965, 966, 1064
AflIII ACRYGT 1 cut(s) 439
AgeI ACCGGT 1 cut(s) 1057
AgsI TTSAA 8 cut(s) 43, 148, 328, 356, 473, 593, 993, 1336
AjnI CCWGG 2 cut(s) 309, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AleI CACNNNNGTG 1 cut(s) 406
AluBI AGCT 9 cut(s) 100, 236, 359, 419, 482, 518, 536, 741, 776
AluI AGCT 9 cut(s) 100, 236, 359, 419, 482, 518, 536, 741, 776
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 782
AlwI GGATC 1 cut(s) 851
Ama87I CYCGRG 1 cut(s) 997
Aor51HI AGCGCT 1 cut(s) 764
AoxI GGCC 3 cut(s) 273, 475, 1115
ApeKI GCWGC 3 cut(s) 164, 212, 1163
ApoI RAATTY 4 cut(s) 109, 679, 725, 1007
AsiGI ACCGGT 1 cut(s) 1057
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 2 cut(s) 507, 765
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 4 cut(s) 34, 177, 230, 391
AsuII TTCGAA 2 cut(s) 677, 884
AvaI CYCGRG 1 cut(s) 997
BanII GRGCYC 2 cut(s) 238, 451
BbrPI CACGTG 1 cut(s) 440
BbsI GAAGAC 2 cut(s) 123, 379
Bbv12I GWGCWC 1 cut(s) 238
BbvCI CCTCAGC 2 cut(s) 537, 697
BbvI GCAGC 3 cut(s) 151, 199, 1175
BccI CCATC 2 cut(s) 741, 829
BciT130I CCWGG 2 cut(s) 311, 1029
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 4 cut(s) 243, 758, 792, 939
BfmI CTRYAG 2 cut(s) 213, 222
BfoI RGCGCY 2 cut(s) 508, 766
BisI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
BlpI GCTNAGC 2 cut(s) 777, 951
BlsI GCNGC 8 cut(s) 166, 214, 277, 394, 455, 509, 1165, 1299
Bme1390I CCNGG 2 cut(s) 311, 1029
BmeT110I CYCGRG 1 cut(s) 997
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 610
BmrFI CCNGG 2 cut(s) 311, 1029
BmsI GCATC 1 cut(s) 696
BpiI GAAGAC 2 cut(s) 123, 379
Bpu10I CCTNAGC 2 cut(s) 537, 697
Bpu1102I GCTNAGC 2 cut(s) 777, 951
Bpu14I TTCGAA 2 cut(s) 677, 884
BpuEI CTTGAG 1 cut(s) 1202
BsaAI YACGTR 1 cut(s) 440
BsaJI CCNNGG 5 cut(s) 301, 782, 1027, 1197, 1340
BsaWI WCCGGW 2 cut(s) 1057, 1073
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bsc4I CCNNNNNNNGG 5 cut(s) 618, 866, 965, 966, 1064
Bse118I RCCGGY 1 cut(s) 1057
Bse3DI GCAATG 1 cut(s) 662
BseBI CCWGG 2 cut(s) 311, 1029
BseDI CCNNGG 5 cut(s) 301, 782, 1027, 1197, 1340
BseGI GGATG 3 cut(s) 752, 774, 1207
BseLI CCNNNNNNNGG 5 cut(s) 618, 866, 965, 966, 1064
BseMI GCAATG 1 cut(s) 662
BseMII CTCAG 7 cut(s) 395, 528, 662, 711, 816, 921, 1260
BseXI GCAGC 3 cut(s) 151, 199, 1175
BseYI CCCAGC 1 cut(s) 741
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 3 cut(s) 275, 477, 1117
BshTI ACCGGT 1 cut(s) 1057
BsiHKAI GWGCWC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 997
BsiSI CCGG 2 cut(s) 1058, 1074
BslI CCNNNNNNNGG 5 cut(s) 618, 866, 965, 966, 1064
BsmAI GTCTC 1 cut(s) 782
BsnI GGCC 3 cut(s) 275, 477, 1117
BsoBI CYCGRG 1 cut(s) 997
Bsp119I TTCGAA 2 cut(s) 677, 884
Bsp1286I GDGCHC 2 cut(s) 238, 451
Bsp143I GATC 3 cut(s) 662, 828, 856
Bsp1720I GCTNAGC 2 cut(s) 777, 951
Bsp19I CCATGG 2 cut(s) 782, 1197
BspACI CCGC 7 cut(s) 276, 294, 392, 454, 508, 1298, 1315
BspANI GGCC 3 cut(s) 275, 477, 1117
BspCNI CTCAG 7 cut(s) 396, 529, 661, 710, 817, 920, 1261
BspFNI CGCG 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 610
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 1 cut(s) 851
BspT104I TTCGAA 2 cut(s) 677, 884
BsrDI GCAATG 1 cut(s) 662
BsrFI RCCGGY 1 cut(s) 1057
BssAI RCCGGY 1 cut(s) 1057
BssECI CCNNGG 5 cut(s) 301, 782, 1027, 1197, 1340
BssMI GATC 3 cut(s) 662, 828, 856
BssT1I CCWWGG 3 cut(s) 782, 1197, 1340
Bst2UI CCWGG 2 cut(s) 311, 1029
Bst4CI ACNGT 2 cut(s) 226, 815
Bst6I CTCTTC 1 cut(s) 843
BstAPI GCANNNNNTGC 1 cut(s) 493
BstBAI YACGTR 1 cut(s) 440
BstBI TTCGAA 2 cut(s) 677, 884
BstC8I GCNNGC 6 cut(s) 390, 413, 417, 451, 458, 1307
BstDSI CCRYGG 2 cut(s) 782, 1197
BstENI CCTNNNNNAGG 1 cut(s) 616
BstF5I GGATG 3 cut(s) 752, 774, 1207
BstFNI CGCG 1 cut(s) 456
BstH2I RGCGCY 2 cut(s) 508, 766
BstHHI GCGC 2 cut(s) 507, 765
BstKTI GATC 3 cut(s) 665, 831, 859
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 3 cut(s) 662, 828, 856
BstMWI GCNNNNNNNGC 7 cut(s) 209, 218, 320, 329, 493, 502, 1306
BstNI CCWGG 2 cut(s) 311, 1029
BstNSI RCATGY 3 cut(s) 415, 496, 1309
BstSCI CCNGG 2 cut(s) 309, 1027
BstSFI CTRYAG 2 cut(s) 213, 222
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 3 cut(s) 151, 199, 1175
BstV2I GAAGAC 2 cut(s) 123, 379
BstX2I RGATCY 1 cut(s) 856
BstYI RGATCY 1 cut(s) 856
BsuRI GGCC 3 cut(s) 275, 477, 1117
BtgI CCRYGG 2 cut(s) 782, 1197
BtsCI GGATG 3 cut(s) 752, 774, 1207
BtsI GCAGTG 2 cut(s) 207, 222
BtsIMutI CAGTG 5 cut(s) 207, 222, 231, 401, 820
Cac8I GCNNGC 6 cut(s) 390, 413, 417, 451, 458, 1307
CfoI GCGC 2 cut(s) 507, 765
Cfr10I RCCGGY 1 cut(s) 1057
Cfr13I GGNCC 1 cut(s) 273
Csp6I GTAC 2 cut(s) 703, 1015
CspAI ACCGGT 1 cut(s) 1057
CviAII CATG 7 cut(s) 412, 493, 783, 903, 1126, 1198, 1306
CviQI GTAC 2 cut(s) 703, 1015
DpnI GATC 3 cut(s) 664, 830, 858
DpnII GATC 3 cut(s) 662, 828, 856
DraI TTTAAA 1 cut(s) 616
DrdI GACNNNNNNGTC 1 cut(s) 982
DseDI GACNNNNNNGTC 1 cut(s) 982
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 3 cut(s) 782, 1197, 1340
Eco24I GRGCYC 2 cut(s) 238, 451
Eco32I GATATC 1 cut(s) 523
Eco47III AGCGCT 1 cut(s) 764
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 3 cut(s) 192, 219, 876
Eco72I CACGTG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 997
EcoICRI GAGCTC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 616
EcoRI GAATTC 3 cut(s) 109, 679, 725
EcoRII CCWGG 2 cut(s) 309, 1027
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 3 cut(s) 782, 1197, 1340
EcoT38I GRGCYC 2 cut(s) 238, 451
ErhI CCWWGG 3 cut(s) 782, 1197, 1340
FaeI CATG 7 cut(s) 415, 496, 786, 906, 1129, 1201, 1309
FaiI YATR 9 cut(s) 35, 103, 413, 494, 784, 904, 1127, 1199, 1307
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FatI CATG 7 cut(s) 411, 492, 782, 902, 1125, 1197, 1305
FauI CCCGC 1 cut(s) 1322
Fnu4HI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
FokI GGATG 3 cut(s) 759, 781, 1214
FriOI GRGCYC 2 cut(s) 238, 451
Fsp4HI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
FspBI CTAG 4 cut(s) 243, 758, 792, 939
GlaI GCGC 2 cut(s) 506, 764
GluI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
GsaI CCCAGC 1 cut(s) 745
HaeII RGCGCY 2 cut(s) 508, 766
HaeIII GGCC 3 cut(s) 275, 477, 1117
HapII CCGG 2 cut(s) 1058, 1074
HhaI GCGC 2 cut(s) 507, 765
Hin1II CATG 7 cut(s) 415, 496, 786, 906, 1129, 1201, 1309
Hin6I GCGC 2 cut(s) 505, 763
HinP1I GCGC 2 cut(s) 505, 763
HincII GTYRAC 2 cut(s) 1143, 1285
HindII GTYRAC 2 cut(s) 1143, 1285
HinfI GANTC 8 cut(s) 144, 154, 182, 285, 589, 674, 1139, 1247
HpaII CCGG 2 cut(s) 1058, 1074
HphI GGTGA 4 cut(s) 34, 177, 230, 391
Hpy166II GTNNAC 2 cut(s) 1143, 1285
Hpy188III TCNNGA 3 cut(s) 12, 1065, 1219
Hpy8I GTNNAC 2 cut(s) 1143, 1285
HpyAV CCTTC 9 cut(s) 167, 186, 312, 322, 467, 536, 599, 915, 1284
HpyCH4III ACNGT 2 cut(s) 226, 815
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 215, 411, 415, 487
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 218, 320, 329, 493, 502, 1306
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 7 cut(s) 415, 496, 786, 906, 1129, 1201, 1309
HspAI GCGC 2 cut(s) 505, 763
Kzo9I GATC 3 cut(s) 662, 828, 856
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 3 cut(s) 151, 199, 1175
LweI GCATC 1 cut(s) 696
MaeI CTAG 4 cut(s) 243, 758, 792, 939
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 6 cut(s) 397, 815, 931, 973, 1106, 1121
MalI GATC 3 cut(s) 664, 830, 858
MboI GATC 3 cut(s) 662, 828, 856
MboII GAAGA 7 cut(s) 94, 123, 384, 830, 882, 981, 1029
MfeI CAATTG 1 cut(s) 630
MflI RGATCY 1 cut(s) 856
MhlI GDGCHC 2 cut(s) 238, 451
MluCI AATT 7 cut(s) 109, 342, 630, 679, 691, 725, 1007
MlyI GAGTC 1 cut(s) 1148
MmeI TCCRAC 1 cut(s) 834
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 4 cut(s) 527, 579, 615, 797
MslI CAYNNNNRTG 1 cut(s) 406
MspI CCGG 2 cut(s) 1058, 1074
MspR9I CCNGG 2 cut(s) 311, 1029
MunI CAATTG 1 cut(s) 630
MvaI CCWGG 2 cut(s) 311, 1029
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 7 cut(s) 209, 218, 320, 329, 493, 502, 1306
NcoI CCATGG 2 cut(s) 782, 1197
NdeII GATC 3 cut(s) 662, 828, 856
NlaIII CATG 7 cut(s) 415, 496, 786, 906, 1129, 1201, 1309
NlaIV GGNNCC 1 cut(s) 610
NmuCI GTSAC 2 cut(s) 815, 973
NspI RCATGY 3 cut(s) 415, 496, 1309
NspV TTCGAA 2 cut(s) 677, 884
OliI CACNNNNGTG 1 cut(s) 406
PaeI GCATGC 2 cut(s) 415, 1309
PcsI WCGNNNNNNNCGW 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 7 cut(s) 144, 154, 182, 285, 589, 674, 1247
PflFI GACNNNGTC 1 cut(s) 1138
PinAI ACCGGT 1 cut(s) 1057
PkrI GCNGC 8 cut(s) 166, 214, 277, 394, 455, 509, 1165, 1299
PleI GAGTC 1 cut(s) 1147
PmaCI CACGTG 1 cut(s) 440
PmlI CACGTG 1 cut(s) 440
PpsI GAGTC 1 cut(s) 1147
Ppu21I YACGTR 1 cut(s) 440
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 309, 1027
PspCI CACGTG 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 741
PspGI CCWGG 2 cut(s) 309, 1027
PspN4I GGNNCC 1 cut(s) 610
PspPI GGNCC 1 cut(s) 273
PsrI GAACNNNNNNTAC 2 cut(s) 1249, 1281
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 856
PsyI GACNNNGTC 1 cut(s) 1138
RsaI GTAC 2 cut(s) 704, 1016
RsaNI GTAC 2 cut(s) 703, 1015
RseI CAYNNNNRTG 1 cut(s) 406
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 4 cut(s) 527, 579, 615, 797
SatI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
Sau3AI GATC 3 cut(s) 662, 828, 856
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 1148
ScrFI CCNGG 2 cut(s) 311, 1029
SduI GDGCHC 2 cut(s) 238, 451
SfaNI GCATC 1 cut(s) 696
SfcI CTRYAG 2 cut(s) 213, 222
SfuI TTCGAA 2 cut(s) 677, 884
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 1217
SmoI CTYRAG 1 cut(s) 1217
SphI GCATGC 2 cut(s) 415, 1309
Sse9I AATT 7 cut(s) 109, 342, 630, 679, 691, 725, 1007
SsiI CCGC 7 cut(s) 276, 294, 392, 454, 508, 1298, 1315
SspMI CTAG 4 cut(s) 243, 758, 792, 939
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 309, 1027
StyI CCWWGG 3 cut(s) 782, 1197, 1340
TaaI ACNGT 2 cut(s) 226, 815
TaiI ACGT 1 cut(s) 442
TaqI TCGA 5 cut(s) 232, 427, 677, 729, 884
TaqII GACCGA 2 cut(s) 972, 1151
TasI AATT 7 cut(s) 109, 342, 630, 679, 691, 725, 1007
TauI GCSGC 5 cut(s) 278, 395, 456, 510, 1300
TfiI GAWTC 7 cut(s) 144, 154, 182, 285, 589, 674, 1247
Tru1I TTAA 4 cut(s) 527, 579, 615, 797
Tru9I TTAA 4 cut(s) 527, 579, 615, 797
TscAI CASTG 5 cut(s) 214, 222, 231, 408, 820
TseFI GTSAC 2 cut(s) 815, 973
TseI GCWGC 3 cut(s) 164, 212, 1163
Tsp45I GTSAC 2 cut(s) 815, 973
TspDTI ATGAA 3 cut(s) 102, 1142, 1266
TspRI CASTG 5 cut(s) 214, 222, 231, 408, 820
Tth111I GACNNNGTC 1 cut(s) 1138
XagI CCTNNNNNAGG 1 cut(s) 616
XapI RAATTY 4 cut(s) 109, 679, 725, 1007
XceI RCATGY 3 cut(s) 415, 496, 1309
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 4 cut(s) 243, 758, 792, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.