RLG00000004607

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000824
Physical Location & Seq
Reverse (-)
60685022 .. 60685707
686 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004607

Sequence Viewer

Length: 570 bp
ATGTGTTTTGGACTACTCGGGACAGATAAAGGCCTCACTTCTCATCAAACACATGCATATATACTCCTCTGGGTAGGATCTTCATCTTCTCATCCAAATCTTCACTTTCCATACCACTCTCATCTTTTGGGAAAGTTGGCGAAGAATCTGATAATCAAGGCGTGGAAGAGATGTAGTTTAACAAACCAAAGCAGCAGAAAGCGGCAGAAGAGCAAGGACCGAGTATTGGCTCCGGATGGGTGCTTCTCGGTCTACGTTGGACCAGAGAAGCAACGATTCGTGGTGAAGGTTGAGTTTGCTAACCATCCGTTGTTCAAGGTACTGTTAGAGTATGCTGCATGGGAATATGGGTACAGCAGTGGAGGTCCAATTATGCTTCCTTGCGATGTGGAATTGTTCTACAATGTTTTGGCAGCGATGGAGAACAATGTTGATGATGATATGATGAGTACACCCAACGATTTTTTCTTCAAACCTTGCAGCAGTCTAACTCGTCATCTTCGTTTAAATTCGAGCAAGTTTAAGGGCTATGGTGGTGCTTATATGCTGCTTAGTCCGTCACTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

190

Amino Acids

21.29

Weight (kDa)

9.18

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 53 - 139 1.1e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 252
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 85
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 3 cut(s) 321, 353, 451
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 2 cut(s) 316, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
AlwI GGATC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 17
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 5 cut(s) 192, 335, 413, 480, 547
ApoI RAATTY 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 217, 260, 365
AsuHPI GGTGA 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 17
AvaII GGWCC 3 cut(s) 217, 260, 365
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BbvI GCAGC 5 cut(s) 204, 322, 425, 492, 534
BccI CCATC 3 cut(s) 230, 312, 412
BisI GCNGC 6 cut(s) 193, 203, 336, 414, 481, 548
BlsI GCNGC 6 cut(s) 194, 204, 337, 415, 482, 549
Bme18I GGWCC 3 cut(s) 217, 260, 365
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 3 cut(s) 217, 260, 365
BmiI GGNNCC 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 82
BseAI TCCGGA 1 cut(s) 232
BseGI GGATG 3 cut(s) 91, 241, 304
BseJI GATNNNNATC 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 5 cut(s) 204, 322, 425, 492, 534
BshFI GGCC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 203
BssMI GATC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 324
Bst6I CTCTTC 2 cut(s) 161, 203
BstDEI CTNAG 1 cut(s) 551
BstF5I GGATG 3 cut(s) 91, 241, 304
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 56
BstV1I GCAGC 5 cut(s) 204, 322, 425, 492, 534
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 2 cut(s) 399, 431
BtsCI GGATG 3 cut(s) 91, 241, 304
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 217, 260, 365
Csp6I GTAC 3 cut(s) 320, 352, 450
CviAII CATG 2 cut(s) 53, 339
CviJI RGCY 3 cut(s) 33, 230, 528
CviKI_1 RGCY 3 cut(s) 33, 230, 528
CviQI GTAC 3 cut(s) 320, 352, 450
DdeI CTNAG 1 cut(s) 551
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
DraI TTTAAA 1 cut(s) 507
Eam1104I CTCTTC 2 cut(s) 161, 203
EarI CTCTTC 2 cut(s) 161, 203
Eco147I AGGCCT 1 cut(s) 33
Eco47I GGWCC 3 cut(s) 217, 260, 365
Eco88I CYCGRG 1 cut(s) 17
EcoT22I ATGCAT 1 cut(s) 58
FaeI CATG 2 cut(s) 56, 342
FaqI GGGAC 1 cut(s) 34
FatI CATG 2 cut(s) 52, 338
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 6 cut(s) 193, 203, 336, 414, 481, 548
FokI GGATG 3 cut(s) 78, 248, 291
Fsp4HI GCNGC 6 cut(s) 193, 203, 336, 414, 481, 548
GluI GCNGC 6 cut(s) 193, 203, 336, 414, 481, 548
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 233
Hin1II CATG 2 cut(s) 56, 342
HinfI GANTC 2 cut(s) 145, 276
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 253, 452
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 19, 233
Hpy8I GTNNAC 2 cut(s) 253, 452
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 56, 338, 480
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 56, 342
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 77
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 3 cut(s) 55, 246, 276
Lsp1109I GCAGC 5 cut(s) 204, 322, 425, 492, 534
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 558
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 8 cut(s) 72, 78, 92, 154, 178, 220, 460, 491
MflI RGATCY 1 cut(s) 77
MluCI AATT 3 cut(s) 369, 392, 508
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 3 cut(s) 44, 77, 356
Mph1103I ATGCAT 1 cut(s) 58
MroI TCCGGA 1 cut(s) 232
MseI TTAA 4 cut(s) 179, 506, 522, 568
MspI CCGG 1 cut(s) 233
NdeII GATC 1 cut(s) 77
NlaIII CATG 2 cut(s) 56, 342
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 558
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 1 cut(s) 56
PceI AGGCCT 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 499
PfeI GAWTC 2 cut(s) 145, 276
PkrI GCNGC 6 cut(s) 194, 204, 337, 415, 482, 549
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 3 cut(s) 217, 260, 365
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 3 cut(s) 321, 353, 451
RsaNI GTAC 3 cut(s) 320, 352, 450
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 4 cut(s) 179, 506, 522, 568
SatI GCNGC 6 cut(s) 193, 203, 336, 414, 481, 548
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 3 cut(s) 217, 260, 365
SetI ASST 5 cut(s) 258, 291, 321, 367, 478
SinI GGWCC 3 cut(s) 217, 260, 365
Sse9I AATT 3 cut(s) 369, 392, 508
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 1 cut(s) 202
StuI AGGCCT 1 cut(s) 33
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 512
TaqII GACCGA 2 cut(s) 234, 238
TasI AATT 3 cut(s) 369, 392, 508
TatI WGTACW 1 cut(s) 449
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 2 cut(s) 145, 276
Tru1I TTAA 4 cut(s) 179, 506, 522, 568
Tru9I TTAA 4 cut(s) 179, 506, 522, 568
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 558
TseI GCWGC 5 cut(s) 192, 335, 413, 480, 547
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 2 cut(s) 297, 546
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 3 cut(s) 217, 260, 365
XapI RAATTY 1 cut(s) 508
XceI RCATGY 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.