FvH4_5g08780

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000824
Physical Location & Seq
Reverse (-)
5036797 .. 5037306
510 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08780.t1

Sequence Viewer

Length: 510 bp
ATGGATATGGTGAAGGGAAACTCAAGAAAGAAGAATCAGACTAAGAAACCGTCGAGGCCATGCAGTAATTTATTGAAACAAGCCAGCAAAGTGTGCGCAGCACTGAGTTCATTGACGAAGAGAAAATCTTGGAGTTGCAGTACTAGCACTTGCAGCCGGAAGAAGAACAAGGCCGGTAGAGCTGCTCCGGCCGGGTGTTTCCCAGCCTACGTCGGTCCCGAAAAGCAACAGTTTGTTGTGAAGACGGAGATTGCTAACCATCCATTGTTCAAGGTGCTGTTAGAGGATGCAGCATTGAAGTATGGGTACAAAAATGATGGTCCGCTTTTGCTTCCTTGTGATGTGGATTTGTTCTGCAATGTTTTGACAGAGATAGAGGGCAGTATCGTTGAGGATATGATCTGCCCCAATAGTTGGTGTTTGATGCGAGGTTTCTTTGGTTCAGCTCGTCCTCGTCATTTAGATTTTAGAATGAACAAGGGCTACGGTGGTGCTTATAGGTCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

170

Amino Acids

18.73

Weight (kDa)

9.62

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 36 - 123 1.5e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 97
AccB7I CCANNNNNTGG 1 cut(s) 414
AciI CCGC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 189
AfaI GTAC 2 cut(s) 142, 308
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 3 cut(s) 76, 271, 298
AluBI AGCT 2 cut(s) 182, 446
AluI AGCT 2 cut(s) 182, 446
AoxI GGCC 3 cut(s) 56, 171, 189
ApeKI GCWGC 4 cut(s) 98, 153, 182, 290
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 215, 320, 501
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 3 cut(s) 215, 320, 501
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BbsI GAAGAC 1 cut(s) 248
BbvI GCAGC 4 cut(s) 110, 165, 169, 302
BccI CCATC 2 cut(s) 267, 311
BcnI CCSGG 1 cut(s) 193
BfaI CTAG 1 cut(s) 144
BisI GCNGC 4 cut(s) 99, 154, 183, 291
BlsI GCNGC 4 cut(s) 100, 155, 184, 292
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 3 cut(s) 215, 320, 501
BmgT120I GGNCC 3 cut(s) 215, 320, 501
BmiI GGNNCC 2 cut(s) 217, 503
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 2 cut(s) 277, 414
BpiI GAAGAC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse118I RCCGGY 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 364
BseGI GGATG 2 cut(s) 259, 292
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 95
BseX3I CGGCCG 1 cut(s) 189
BseXI GCAGC 4 cut(s) 110, 165, 169, 302
BseYI CCCAGC 1 cut(s) 202
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 58, 173, 191
BsiEI CGRYCG 1 cut(s) 192
BsiSI CCGG 4 cut(s) 157, 174, 188, 192
BslFI GGGAC 2 cut(s) 201, 487
BslI CCNNNNNNNGG 1 cut(s) 414
BsmFI GGGAC 2 cut(s) 201, 487
BsnI GGCC 3 cut(s) 58, 173, 191
Bsp143I GATC 1 cut(s) 399
BspACI CCGC 1 cut(s) 323
BspANI GGCC 3 cut(s) 58, 173, 191
BspCNI CTCAG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 217, 503
BsrDI GCAATG 1 cut(s) 364
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssMI GATC 1 cut(s) 399
Bst4CI ACNGT 3 cut(s) 51, 231, 488
Bst6I CTCTTC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 42, 104
BstF5I GGATG 2 cut(s) 259, 292
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 402
BstMBI GATC 1 cut(s) 399
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 5 cut(s) 93, 144, 153, 179, 188
BstSCI CCNGG 1 cut(s) 191
BstV1I GCAGC 4 cut(s) 110, 165, 169, 302
BstV2I GAAGAC 1 cut(s) 248
BstZI CGGCCG 1 cut(s) 189
BsuRI GGCC 3 cut(s) 58, 173, 191
BtsCI GGATG 2 cut(s) 259, 292
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 215, 320, 501
Csp6I GTAC 2 cut(s) 141, 307
CviAII CATG 1 cut(s) 60
CviJI RGCY 9 cut(s) 58, 83, 156, 173, 182, 191, 206, 446, 483
CviKI_1 RGCY 9 cut(s) 58, 83, 156, 173, 182, 191, 206, 446, 483
CviQI GTAC 2 cut(s) 141, 307
DdeI CTNAG 2 cut(s) 42, 104
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
EaeI YGGCCR 1 cut(s) 189
EagI CGGCCG 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EclXI CGGCCG 1 cut(s) 189
Eco47I GGWCC 3 cut(s) 215, 320, 501
Eco52I CGGCCG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 501
FaeI CATG 1 cut(s) 63
FaiI YATR 5 cut(s) 8, 61, 303, 398, 498
FaqI GGGAC 2 cut(s) 201, 487
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 4 cut(s) 99, 154, 183, 291
FokI GGATG 2 cut(s) 246, 299
Fsp4HI GCNGC 4 cut(s) 99, 154, 183, 291
FspBI CTAG 1 cut(s) 144
FspI TGCGCA 1 cut(s) 97
GlaI GCGC 1 cut(s) 97
GluI GCNGC 4 cut(s) 99, 154, 183, 291
GsaI CCCAGC 1 cut(s) 206
HaeIII GGCC 3 cut(s) 58, 173, 191
HapII CCGG 4 cut(s) 157, 174, 188, 192
HhaI GCGC 1 cut(s) 98
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 34
HpaII CCGG 4 cut(s) 157, 174, 188, 192
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 2 cut(s) 24, 218
Hpy99I CGWCG 2 cut(s) 55, 215
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 3 cut(s) 51, 231, 488
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 5 cut(s) 63, 138, 153, 290, 357
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 144, 153, 179, 188
HpyF3I CTNAG 2 cut(s) 42, 104
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 97, 170, 187, 201, 205, 216
Lsp1109I GCAGC 4 cut(s) 110, 165, 169, 302
LweI GCATC 2 cut(s) 277, 414
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 210
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MboII GAAGA 5 cut(s) 43, 130, 172, 175, 253
MluCI AATT 1 cut(s) 67
MnlI CCTC 6 cut(s) 48, 277, 370, 385, 422, 462
MspI CCGG 4 cut(s) 157, 174, 188, 192
MspR9I CCNGG 1 cut(s) 193
MwoI GCNNNNNNNGC 5 cut(s) 93, 144, 153, 179, 188
NciI CCSGG 1 cut(s) 193
NdeII GATC 1 cut(s) 399
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 2 cut(s) 217, 503
NsbI TGCGCA 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 414
PkrI GCNGC 4 cut(s) 100, 155, 184, 292
PpuMI RGGWCCY 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 501
PspFI CCCAGC 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 217, 503
PspPI GGNCC 3 cut(s) 215, 320, 501
PspPPI RGGWCCY 1 cut(s) 501
PsrI GAACNNNNNNTAC 2 cut(s) 467, 499
RsaI GTAC 2 cut(s) 142, 308
RsaNI GTAC 2 cut(s) 141, 307
SatI GCNGC 4 cut(s) 99, 154, 183, 291
Sau3AI GATC 1 cut(s) 399
Sau96I GGNCC 3 cut(s) 215, 320, 501
ScaI AGTACT 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 193
SetI ASST 6 cut(s) 184, 213, 276, 433, 448, 503
SfaNI GCATC 2 cut(s) 277, 414
SinI GGWCC 3 cut(s) 215, 320, 501
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 1 cut(s) 67
SsiI CCGC 1 cut(s) 323
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 3 cut(s) 51, 231, 488
TaiI ACGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 53
TaqII GACCGA 1 cut(s) 203
TasI AATT 1 cut(s) 67
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 34
TscAI CASTG 1 cut(s) 108
TseI GCWGC 4 cut(s) 98, 153, 182, 290
TspDTI ATGAA 2 cut(s) 99, 488
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 108
Van91I CCANNNNNTGG 1 cut(s) 414
VpaK11BI GGWCC 3 cut(s) 215, 320, 501
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.