Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000608.1

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Forward (+)

16872 .. 17426

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000608.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggatatcgtgaagggaaggtggacgaagaatccgatcatcaaggcgtggaagcgatgcagtactttacctaaacaaagcagcacgaaaggctctacagcagctgctgcattgacaagaagcaaatcatggagctccagtactactagtagtactggcacttgcaagcagaagaagaacaaggccaaggcatgccaagtcgctccggctgggtgtttcacagtctacgttggacccgaaaagcagcgatttgtggtgaggatggagtttcttaatcatccattgttcaggatgctgttggaggatgcagcattggagtatgggtacaaaagtgacggtccgatattgcttccttgccatgtggatctgttctgcaatgttatggcagagatggagagcagtgatatcgatgaggataggatcagtgctccccgtaattgttctccgataaacttcagtctggctcgtcgtagaaattgtgccagcaacagaggctgcggtggtgcttatagggtacttactccaacatcgtcatcatcaatggtggttacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

184

Amino Acids

20.21

Weight (kDa)

9.57

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	1 cut(s)	498
AclWI	GGATC	2 cut(s)	372, 428
AcuI	CTGAAG	1 cut(s)	439
AfaI	GTAC	5 cut(s)	64, 142, 154, 326, 516
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	2 cut(s)	104, 135
AluI	AGCT	2 cut(s)	104, 135
Alw21I	GWGCWC	2 cut(s)	137, 430
AlwI	GGATC	2 cut(s)	372, 428
AlwNI	CAGNNNCTG	3 cut(s)	104, 107, 495
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	7 cut(s)	81, 101, 104, 107, 244, 308, 495
AspS9I	GGNCC	2 cut(s)	233, 338
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	233, 338
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	137, 430
BbvI	GCAGC	7 cut(s)	91, 93, 94, 113, 256, 320, 482
BccI	CCATC	2 cut(s)	256, 385
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	147, 553
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	7 cut(s)	82, 102, 105, 108, 245, 309, 496
BlsI	GCNGC	7 cut(s)	83, 103, 106, 109, 246, 310, 497
BmcAI	AGTACT	3 cut(s)	64, 142, 154
Bme18I	GGWCC	2 cut(s)	233, 338
BmgT120I	GGNCC	2 cut(s)	233, 338
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	3 cut(s)	47, 282, 295
BpmI	CTGGAG	1 cut(s)	121
Bsa29I	ATCGAT	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 308, 338
Bse1I	ACTGG	2 cut(s)	138, 160
Bse3DI	GCAATG	1 cut(s)	382
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	4 cut(s)	267, 277, 297, 310
BseMI	GCAATG	1 cut(s)	382
BseNI	ACTGG	2 cut(s)	138, 160
BseXI	GCAGC	7 cut(s)	91, 93, 94, 113, 256, 320, 482
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	408
BsiHKAI	GWGCWC	2 cut(s)	137, 430
BsiSI	CCGG	1 cut(s)	206
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	137, 430
Bsp143I	GATC	3 cut(s)	36, 364, 420
BspACI	CCGC	1 cut(s)	498
BspANI	GGCC	1 cut(s)	185
BspDI	ATCGAT	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	372, 428
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	138, 160
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	36, 364, 420
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	223, 338
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	167, 193, 484
BstEII	GGTNACC	1 cut(s)	547
BstF5I	GGATG	4 cut(s)	267, 277, 297, 310
BstKTI	GATC	3 cut(s)	39, 367, 423
BstMBI	GATC	3 cut(s)	36, 364, 420
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 107, 492
BstNSI	RCATGY	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	7 cut(s)	91, 93, 94, 113, 256, 320, 482
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	267, 277, 297, 310
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	406, 430
Cac8I	GCNNGC	3 cut(s)	167, 193, 484
CaiI	CAGNNNCTG	3 cut(s)	104, 107, 495
Cfr13I	GGNCC	2 cut(s)	233, 338
ClaI	ATCGAT	1 cut(s)	408
CpoI	CGGWCCG	1 cut(s)	338
Csp6I	GTAC	5 cut(s)	63, 141, 153, 325, 515
CspI	CGGWCCG	1 cut(s)	338
CviAII	CATG	3 cut(s)	129, 192, 359
CviJI	RGCY	7 cut(s)	93, 104, 135, 185, 209, 464, 495
CviKI_1	RGCY	7 cut(s)	93, 104, 135, 185, 209, 464, 495
CviQI	GTAC	5 cut(s)	63, 141, 153, 325, 515
DpnI	GATC	3 cut(s)	38, 366, 422
DpnII	GATC	3 cut(s)	36, 364, 420
Ecl136II	GAGCTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	2 cut(s)	7, 406
Eco47I	GGWCC	2 cut(s)	233, 338
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	439
Eco91I	GGTNACC	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	135
EcoO65I	GGTNACC	1 cut(s)	547
EcoRV	GATATC	2 cut(s)	7, 406
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	132, 195, 362
FaiI	YATR	6 cut(s)	130, 193, 321, 360, 383, 510
FatI	CATG	3 cut(s)	128, 191, 358
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	7 cut(s)	82, 102, 105, 108, 245, 309, 496
FokI	GGATG	4 cut(s)	264, 274, 304, 317
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	7 cut(s)	82, 102, 105, 108, 245, 309, 496
FspBI	CTAG	2 cut(s)	147, 553
GluI	GCNGC	7 cut(s)	82, 102, 105, 108, 245, 309, 496
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	3 cut(s)	132, 195, 362
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	24, 226
Hpy188I	TCNGA	3 cut(s)	36, 342, 447
Hpy188III	TCNNGA	2 cut(s)	10, 289
Hpy8I	GTNNAC	2 cut(s)	24, 226
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	2 cut(s)	7, 12
HpyCH4III	ACNGT	2 cut(s)	223, 338
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	5 cut(s)	60, 110, 165, 308, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 107, 492
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	132, 195, 362
Kzo9I	GATC	3 cut(s)	36, 364, 420
LmnI	GCTCC	4 cut(s)	132, 140, 208, 433
LpnPI	CCDG	7 cut(s)	141, 151, 195, 219, 274, 446, 496
Lsp1109I	GCAGC	7 cut(s)	91, 93, 94, 113, 256, 320, 482
LweI	GCATC	3 cut(s)	47, 282, 295
MaeI	CTAG	2 cut(s)	147, 553
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	332, 547
MalI	GATC	3 cut(s)	38, 366, 422
MboI	GATC	3 cut(s)	36, 364, 420
MboII	GAAGA	3 cut(s)	40, 184, 187
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	137, 430
MluCI	AATT	2 cut(s)	436, 475
MmeI	TCCRAC	3 cut(s)	211, 279, 548
MnlI	CCTC	4 cut(s)	252, 295, 406, 485
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	90, 107, 492
NdeII	GATC	3 cut(s)	36, 364, 420
NlaIII	CATG	3 cut(s)	132, 195, 362
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 234
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	7 cut(s)	83, 103, 106, 109, 246, 310, 497
Psp124BI	GAGCTC	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	233, 338
PstNI	CAGNNNCTG	3 cut(s)	104, 107, 495
PsuI	RGATCY	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	5 cut(s)	64, 142, 154, 326, 516
RsaNI	GTAC	5 cut(s)	63, 141, 153, 325, 515
Rsr2I	CGGWCCG	1 cut(s)	338
RsrII	CGGWCCG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	7 cut(s)	82, 102, 105, 108, 245, 309, 496
Sau3AI	GATC	3 cut(s)	36, 364, 420
Sau96I	GGNCC	2 cut(s)	233, 338
ScaI	AGTACT	3 cut(s)	64, 142, 154
SduI	GDGCHC	2 cut(s)	137, 430
SetI	ASST	6 cut(s)	23, 73, 106, 137, 231, 554
SfaNI	GCATC	3 cut(s)	47, 282, 295
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	2 cut(s)	233, 338
SpeI	ACTAGT	1 cut(s)	146
SphI	GCATGC	1 cut(s)	195
Sse9I	AATT	2 cut(s)	436, 475
SsiI	CCGC	1 cut(s)	498
SspMI	CTAG	2 cut(s)	147, 553
SstI	GAGCTC	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	223, 338
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	436, 475
TatI	WGTACW	3 cut(s)	62, 140, 152
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	406, 430
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	7 cut(s)	81, 101, 104, 107, 244, 308, 495
Tsp45I	GTSAC	1 cut(s)	332
TspRI	CASTG	2 cut(s)	406, 430
VpaK11BI	GGWCC	2 cut(s)	233, 338
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	147, 553
ZrmI	AGTACT	3 cut(s)	64, 142, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.