Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

61428466 .. 61431453

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0498200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGGTCACGGCCGTCACGCCAGAGAAGGCTGAACGCTGGATTCTACTCTCTAGCCAAAGCCAAAACCGCCACCAGACCCGTCGTCTTTGGCGCTTGGAAGCTCAGACTCATGGCCTCTGTTTTCCTCATCTAAGTCGTCGTTTTGGTCTCCTCCAGGCTCAGCTTTCTCATGATTCTAAAATAATTGGTTGGTTTTGTAGAAGTAAATCGGTAATTGGGTCTGGTATTGAAGCAAAGGGTAATTGGATCTGGTCTGGCGGATTGATACAGCAGGGGATGAAGAATGAGATCTTTGAGATTCAAGCAAGCAGAGCACTGATGTCTGGGCGTGGAAATGGAGGCAAGGGTTTGGGTAAGGGAGGAGCAAAACGACATCGCAAGCTCTTCTGTGATAGCATCAAGGGCACCAAGCCATCGACGGCGAGGAGAAGGAGATCGGAAATCAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

151

Amino Acids

17.01

Weight (kDa)

11.26

Isoelectric Point (pI)

68.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	2 cut(s)	70, 261
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	233, 305
AhdI	GACNNNNNGTC	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	3 cut(s)	104, 166, 385
AluI	AGCT	3 cut(s)	104, 166, 385
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	2 cut(s)	12, 115
AspLEI	GCGC	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	319
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	2 cut(s)	27, 438
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	97
BglII	AGATCT	1 cut(s)	291
BlpI	GCTNAGC	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	158
BmeRI	GACNNNNNGTC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	140
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	119, 176
BseRI	GAGGAG	3 cut(s)	143, 378, 442
BseSI	GKGCMC	1 cut(s)	410
BseX3I	CGGCCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	14, 117
BshNI	GGYRCC	1 cut(s)	407
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	14, 117
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	319, 410
Bsp143I	GATC	3 cut(s)	249, 291, 437
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	2 cut(s)	70, 261
BspANI	GGCC	2 cut(s)	14, 117
BspCNI	CTCAG	2 cut(s)	118, 175
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	155
BssMI	GATC	3 cut(s)	249, 291, 437
Bst2UI	CCWGG	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	310, 383
BstDEI	CTNAG	3 cut(s)	105, 134, 162
BstF5I	GGATG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	3 cut(s)	252, 294, 440
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	249, 291, 437
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 314, 405
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	410
BstX2I	RGATCY	2 cut(s)	249, 291
BstYI	RGATCY	2 cut(s)	249, 291
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	14, 117
BtgZI	GCGATG	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	310, 383
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	96
CviAII	CATG	2 cut(s)	113, 173
DdeI	CTNAG	3 cut(s)	105, 134, 162
DpnI	GATC	3 cut(s)	251, 293, 439
DpnII	GATC	3 cut(s)	249, 291, 437
DriI	GACNNNNNGTC	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	12
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	392
Eam1105I	GACNNNNNGTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	392
EciI	GGCGGA	1 cut(s)	276
EclXI	CGGCCG	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	155
Eco52I	CGGCCG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	116, 176
FaiI	YATR	2 cut(s)	114, 174
FatI	CATG	2 cut(s)	112, 172
FokI	GGATG	1 cut(s)	292
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	14, 117
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	116, 176
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	4 cut(s)	43, 109, 176, 301
Hpy188I	TCNGA	2 cut(s)	108, 442
Hpy188III	TCNNGA	1 cut(s)	173
Hpy99I	CGWCG	3 cut(s)	87, 144, 424
HpyAV	CCTTC	2 cut(s)	22, 426
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 314, 405
HpyF3I	CTNAG	3 cut(s)	105, 134, 162
Hsp92II	CATG	2 cut(s)	116, 176
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	249, 291, 437
LguI	GCTCTTC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	365
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	7, 16
MalI	GATC	3 cut(s)	251, 293, 439
MboI	GATC	3 cut(s)	249, 291, 437
MboII	GAAGA	2 cut(s)	295, 379
MflI	RGATCY	2 cut(s)	249, 291
MhlI	GDGCHC	2 cut(s)	319, 410
MluCI	AATT	3 cut(s)	186, 216, 244
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	6 cut(s)	128, 138, 164, 335, 356, 420
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	69, 314, 405
NdeII	GATC	3 cut(s)	249, 291, 437
NlaIII	CATG	2 cut(s)	116, 176
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	2 cut(s)	7, 16
PagI	TCATGA	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	392
PfeI	GAWTC	3 cut(s)	43, 176, 301
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	249, 291
SapI	GCTCTTC	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	249, 291, 437
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	319, 410
SetI	ASST	4 cut(s)	9, 106, 168, 387
SfaNI	GCATC	1 cut(s)	408
Sse9I	AATT	3 cut(s)	186, 216, 244
SsiI	CCGC	2 cut(s)	70, 261
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	156
TaqI	TCGA	1 cut(s)	419
TasI	AATT	3 cut(s)	186, 216, 244
TfiI	GAWTC	3 cut(s)	43, 176, 301
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	7, 16
Tsp45I	GTSAC	2 cut(s)	7, 16
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	324
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.