RLG00000007059

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000824
Physical Location & Seq
Reverse (-)
13145773 .. 13147916
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007059

Sequence Viewer

Length: 588 bp
ATGAAGGAGAAAGGTAAGAAGGGCTTGATCACCAAAACATGGGAGCGATGCAAATCCATCGGCCGCAAGAGTAGTAGTACTAGCAATACTACTTCCTCTGCGGCCGTGCCTGCTCTTACAAAGAAGAGCAAATCCTGTCCTCACATCGACCTCTACACGACGGATGATGATCGTCGTCGTCATCAACGCCGCCAGGTGGCACCAGAAGGCTGCTTCTCTGTCTACGTGGGACCTGAAAAGCAAAGGTTTGTGGTGAAAACCGAGTACGCAAACCATCCTCTCTTCAAGTTGCTGCTTGAAGAAGCCGAGTCCGAATTCGGTTACTATAGTAAAGGTCCGCTCGTGCTTCCTTGTGAAGTTGAAGTTTTCTACAAGGTGCTGCTGGAAATGGAGGATTGCGGTGGTGATGATCAGAAGATTTCTCGAGGTTGCGCATTTGCTAAGCGTTATGGGTCTTATCATCTTCTCAGCCCGTCTCGTATGTATGAGAGGCTAGTTACAGGAGGGCTGTTACAGGAAGGAGCTACAGGGTTAACGATGTTCTGGTGCGGGTTGGAGAAACCGTTGACGGCTAGCCGCCACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

196

Amino Acids

22.07

Weight (kDa)

9.11

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 35 - 127 1.1e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 39
AccBSI CCGCTC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 222
AciI CCGC 7 cut(s) 64, 101, 190, 338, 399, 549, 577
AcoI YGGCCR 2 cut(s) 61, 102
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 2 cut(s) 79, 266
AfiI CCNNNNNNNGG 2 cut(s) 39, 196
AgsI TTSAA 3 cut(s) 286, 299, 362
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 524
AluI AGCT 1 cut(s) 524
Alw26I GTCTC 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 2 cut(s) 61, 102
ApeKI GCWGC 3 cut(s) 210, 292, 379
ApoI RAATTY 1 cut(s) 314
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 230, 335
AsuHPI GGTGA 3 cut(s) 22, 265, 416
AsuNHI GCTAGC 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 423
AvaII GGWCC 2 cut(s) 230, 335
BanI GGYRCC 1 cut(s) 199
BauI CACGAG 1 cut(s) 341
BbvI GCAGC 3 cut(s) 197, 279, 366
BccI CCATC 2 cut(s) 65, 282
BceAI ACGGC 2 cut(s) 89, 585
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 1 cut(s) 194
BclI TGATCA 2 cut(s) 27, 409
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 3 cut(s) 81, 494, 573
BfmI CTRYAG 2 cut(s) 325, 525
BisI GCNGC 7 cut(s) 64, 102, 190, 211, 293, 380, 577
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 7 cut(s) 65, 103, 191, 212, 294, 381, 578
BmcAI AGTACT 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 2 cut(s) 230, 335
BmeT110I CYCGRG 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 230, 335
BmiI GGNNCC 2 cut(s) 201, 231
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 38
BmtI GCTAGC 1 cut(s) 576
Bpu1102I GCTNAGC 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 2 cut(s) 52, 168
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 196
Bse1I ACTGG 1 cut(s) 587
Bse8I GATNNNNATC 2 cut(s) 52, 168
BseBI CCWGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 169, 274
BseJI GATNNNNATC 2 cut(s) 52, 168
BseLI CCNNNNNNNGG 2 cut(s) 39, 196
BseMII CTCAG 1 cut(s) 481
BseNI ACTGG 1 cut(s) 587
BseX3I CGGCCG 2 cut(s) 61, 102
BseXI GCAGC 3 cut(s) 197, 279, 366
Bsh1285I CGRYCG 2 cut(s) 64, 105
BshFI GGCC 2 cut(s) 63, 104
BshNI GGYRCC 1 cut(s) 199
BsiEI CGRYCG 2 cut(s) 64, 105
BsiHKCI CYCGRG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 39, 196
BsmAI GTCTC 1 cut(s) 480
BsmBI CGTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 2 cut(s) 63, 104
BsoBI CYCGRG 1 cut(s) 423
Bsp143I GATC 3 cut(s) 27, 169, 409
Bsp1720I GCTNAGC 1 cut(s) 441
BspACI CCGC 7 cut(s) 64, 101, 190, 338, 399, 549, 577
BspANI GGCC 2 cut(s) 63, 104
BspCNI CTCAG 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 201, 231
BspOI GCTAGC 1 cut(s) 576
BspQI GCTCTTC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 340
BsrI ACTGG 1 cut(s) 587
BssMI GATC 3 cut(s) 27, 169, 409
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 564
Bst6I CTCTTC 2 cut(s) 119, 287
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 111, 574
BstDEI CTNAG 2 cut(s) 441, 467
BstF5I GGATG 2 cut(s) 169, 274
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 3 cut(s) 30, 172, 412
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 3 cut(s) 27, 169, 409
BstMCI CGRYCG 2 cut(s) 64, 105
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 2 cut(s) 325, 525
BstV1I GCAGC 3 cut(s) 197, 279, 366
BstZI CGGCCG 2 cut(s) 61, 102
BsuRI GGCC 2 cut(s) 63, 104
BtgZI GCGATG 1 cut(s) 61
BtsCI GGATG 2 cut(s) 169, 274
BtsIMutI CAGTG 1 cut(s) 580
Cac8I GCNNGC 2 cut(s) 111, 574
CfoI GCGC 1 cut(s) 434
Cfr13I GGNCC 2 cut(s) 230, 335
Csp6I GTAC 2 cut(s) 78, 265
CviAII CATG 1 cut(s) 39
CviQI GTAC 2 cut(s) 78, 265
DdeI CTNAG 2 cut(s) 441, 467
DpnI GATC 3 cut(s) 29, 171, 411
DpnII GATC 3 cut(s) 27, 169, 409
EaeI YGGCCR 2 cut(s) 61, 102
EagI CGGCCG 2 cut(s) 61, 102
Eam1104I CTCTTC 2 cut(s) 119, 287
EarI CTCTTC 2 cut(s) 119, 287
EclXI CGGCCG 2 cut(s) 61, 102
Eco47I GGWCC 2 cut(s) 230, 335
Eco52I CGGCCG 2 cut(s) 61, 102
Eco88I CYCGRG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 480
FaeI CATG 1 cut(s) 42
FaiI YATR 5 cut(s) 40, 327, 450, 482, 486
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 243
FatI CATG 1 cut(s) 38
FauI CCCGC 1 cut(s) 542
FbaI TGATCA 2 cut(s) 27, 409
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 7 cut(s) 64, 102, 190, 211, 293, 380, 577
FokI GGATG 2 cut(s) 176, 261
Fsp4HI GCNGC 7 cut(s) 64, 102, 190, 211, 293, 380, 577
FspBI CTAG 3 cut(s) 81, 494, 573
FspI TGCGCA 1 cut(s) 433
GlaI GCGC 1 cut(s) 433
GluI GCNGC 7 cut(s) 64, 102, 190, 211, 293, 380, 577
HaeIII GGCC 2 cut(s) 63, 104
HhaI GCGC 1 cut(s) 434
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HincII GTYRAC 2 cut(s) 534, 567
HindII GTYRAC 2 cut(s) 534, 567
HinfI GANTC 1 cut(s) 308
HpaI GTTAAC 1 cut(s) 534
HphI GGTGA 3 cut(s) 22, 265, 416
Hpy166II GTNNAC 3 cut(s) 223, 534, 567
Hpy188I TCNGA 2 cut(s) 313, 414
Hpy188III TCNNGA 1 cut(s) 423
Hpy8I GTNNAC 3 cut(s) 223, 534, 567
Hpy99I CGWCG 3 cut(s) 163, 177, 180
HpyAV CCTTC 3 cut(s) 13, 200, 512
HpyCH4III ACNGT 1 cut(s) 564
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 441, 467
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 1 cut(s) 432
Ksp22I TGATCA 2 cut(s) 27, 409
KspAI GTTAAC 1 cut(s) 534
Kzo9I GATC 3 cut(s) 27, 169, 409
LguI GCTCTTC 1 cut(s) 119
LmnI GCTCC 2 cut(s) 43, 521
Lsp1109I GCAGC 3 cut(s) 197, 279, 366
LweI GCATC 1 cut(s) 38
MaeI CTAG 3 cut(s) 81, 494, 573
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 320, 496, 510
MalI GATC 3 cut(s) 29, 171, 411
MbiI CCGCTC 1 cut(s) 340
MboI GATC 3 cut(s) 27, 169, 409
MboII GAAGA 5 cut(s) 136, 274, 311, 427, 455
MluCI AATT 1 cut(s) 314
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 8 cut(s) 106, 150, 161, 288, 385, 419, 483, 497
MseI TTAA 1 cut(s) 533
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 3 cut(s) 27, 169, 409
NheI GCTAGC 1 cut(s) 572
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 2 cut(s) 201, 231
NmeAIII GCCGAG 1 cut(s) 331
NsbI TGCGCA 1 cut(s) 433
PaeR7I CTCGAG 1 cut(s) 423
PciSI GCTCTTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 39
PkrI GCNGC 7 cut(s) 65, 103, 191, 212, 294, 381, 578
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Ppu21I YACGTR 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 201, 231
PspPI GGNCC 2 cut(s) 230, 335
PspPPI RGGWCCY 1 cut(s) 230
RsaI GTAC 2 cut(s) 79, 266
RsaNI GTAC 2 cut(s) 78, 265
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 7 cut(s) 64, 102, 190, 211, 293, 380, 577
Sau3AI GATC 3 cut(s) 27, 169, 409
Sau96I GGNCC 2 cut(s) 230, 335
ScaI AGTACT 1 cut(s) 79
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 194
SfaNI GCATC 1 cut(s) 38
SfcI CTRYAG 2 cut(s) 325, 525
Sfr274I CTCGAG 1 cut(s) 423
SinI GGWCC 2 cut(s) 230, 335
SlaI CTCGAG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 1 cut(s) 314
SsiI CCGC 7 cut(s) 64, 101, 190, 338, 399, 549, 577
SspMI CTAG 3 cut(s) 81, 494, 573
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 564
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 147, 424
TasI AATT 1 cut(s) 314
TatI WGTACW 1 cut(s) 77
TauI GCSGC 4 cut(s) 66, 104, 192, 579
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 1 cut(s) 587
TseI GCWGC 3 cut(s) 210, 292, 379
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 587
Van91I CCANNNNNTGG 1 cut(s) 39
VpaK11BI GGWCC 2 cut(s) 230, 335
XapI RAATTY 1 cut(s) 314
XhoI CTCGAG 1 cut(s) 423
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 3 cut(s) 81, 494, 573
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.