Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Forward (+)

2885991 .. 2886546

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGATATCGTGAAGGGAAGGTGGACGAAGAATCCGATCATCAAGGCGTGGAAGCGATGCAGTACTTTACCTAAACAAAGCAGCACGAAAGGCTCTACAGCAGCTGCTTCATTGACAAGAAGCAAATCATGGAGCTCCAGTACTACTAGTAGTACTGGCACTTGCAAGCAGAAGAAGAACAAGGCCAAGGCATGCCAAGTCGCTCCGGCTGGGTGTTTCACAGTCTACGTTGGACCCGAAAAGCAGCGATTTGTGGTGAGGATGGAGTTTCTTAATCATCCATTGTTCAGGATGCTGTTGGAGGATGCAGCATTGGAGTATGGGTACAAAAGTGACGAGATGGAGAGCAGTGATATCGATGAGGATAGGATCAGTGCTCCCCGTAATTGTTCTCCGATAAAATTCAGTCTGGCTCGTCGTAGAAATTGTGCCAGCAACAGAGGCTGCGGTGGTGCTTATAGGGTACTTACTCCAACATCGTCATCATCAATGGTGGTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

167

Amino Acids

18.42

Weight (kDa)

9.84

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	43 - 113	3.1e-17	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	5 cut(s)	64, 142, 154, 326, 465
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	2 cut(s)	104, 135
AluI	AGCT	2 cut(s)	104, 135
Alw21I	GWGCWC	2 cut(s)	137, 379
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	2 cut(s)	104, 444
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	6 cut(s)	81, 101, 104, 244, 308, 444
ApoI	RAATTY	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	268, 490
AvaII	GGWCC	1 cut(s)	233
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	137, 379
BbvI	GCAGC	6 cut(s)	91, 93, 113, 256, 320, 431
BccI	CCATC	2 cut(s)	256, 334
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	147, 502
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	6 cut(s)	82, 102, 105, 245, 309, 445
BlsI	GCNGC	6 cut(s)	83, 103, 106, 246, 310, 446
BmcAI	AGTACT	3 cut(s)	64, 142, 154
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	3 cut(s)	47, 282, 295
BpmI	CTGGAG	1 cut(s)	121
Bsa29I	ATCGAT	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 308, 338
Bse1I	ACTGG	2 cut(s)	138, 160
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	4 cut(s)	267, 277, 297, 310
BseNI	ACTGG	2 cut(s)	138, 160
BseXI	GCAGC	6 cut(s)	91, 93, 113, 256, 320, 431
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	357
BsiHKAI	GWGCWC	2 cut(s)	137, 379
BsiSI	CCGG	1 cut(s)	206
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	137, 379
Bsp143I	GATC	2 cut(s)	36, 369
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	1 cut(s)	185
BspDI	ATCGAT	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	138, 160
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	36, 369
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	223
BstC8I	GCNNGC	3 cut(s)	167, 193, 433
BstEII	GGTNACC	1 cut(s)	496
BstF5I	GGATG	4 cut(s)	267, 277, 297, 310
BstKTI	GATC	2 cut(s)	39, 372
BstMBI	GATC	2 cut(s)	36, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 441
BstNSI	RCATGY	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	6 cut(s)	91, 93, 113, 256, 320, 431
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	267, 277, 297, 310
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	355, 379
Cac8I	GCNNGC	3 cut(s)	167, 193, 433
CaiI	CAGNNNCTG	2 cut(s)	104, 444
Cfr13I	GGNCC	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	5 cut(s)	63, 141, 153, 325, 464
CviAII	CATG	2 cut(s)	129, 192
CviJI	RGCY	7 cut(s)	93, 104, 135, 185, 209, 413, 444
CviKI_1	RGCY	7 cut(s)	93, 104, 135, 185, 209, 413, 444
CviQI	GTAC	5 cut(s)	63, 141, 153, 325, 464
DpnI	GATC	2 cut(s)	38, 371
DpnII	GATC	2 cut(s)	36, 369
Ecl136II	GAGCTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	2 cut(s)	7, 355
Eco47I	GGWCC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	496
EcoICRI	GAGCTC	1 cut(s)	135
EcoO65I	GGTNACC	1 cut(s)	496
EcoRV	GATATC	2 cut(s)	7, 355
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	132, 195
FaiI	YATR	4 cut(s)	130, 193, 321, 459
FatI	CATG	2 cut(s)	128, 191
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	6 cut(s)	82, 102, 105, 245, 309, 445
FokI	GGATG	4 cut(s)	264, 274, 304, 317
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	6 cut(s)	82, 102, 105, 245, 309, 445
FspBI	CTAG	2 cut(s)	147, 502
GluI	GCNGC	6 cut(s)	82, 102, 105, 245, 309, 445
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	2 cut(s)	132, 195
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	2 cut(s)	268, 490
Hpy166II	GTNNAC	2 cut(s)	24, 226
Hpy188I	TCNGA	2 cut(s)	36, 396
Hpy188III	TCNNGA	2 cut(s)	10, 289
Hpy8I	GTNNAC	2 cut(s)	24, 226
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	7, 12
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	60, 165, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 441
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	132, 195
Kzo9I	GATC	2 cut(s)	36, 369
LmnI	GCTCC	4 cut(s)	132, 140, 208, 382
LpnPI	CCDG	7 cut(s)	141, 151, 195, 219, 274, 395, 445
Lsp1109I	GCAGC	6 cut(s)	91, 93, 113, 256, 320, 431
LweI	GCATC	3 cut(s)	47, 282, 295
MaeI	CTAG	2 cut(s)	147, 502
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	332, 496
MalI	GATC	2 cut(s)	38, 371
MboI	GATC	2 cut(s)	36, 369
MboII	GAAGA	3 cut(s)	40, 184, 187
MhlI	GDGCHC	2 cut(s)	137, 379
MluCI	AATT	3 cut(s)	385, 401, 424
MmeI	TCCRAC	3 cut(s)	211, 279, 497
MnlI	CCTC	4 cut(s)	252, 295, 355, 434
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	90, 441
NdeII	GATC	2 cut(s)	36, 369
NlaIII	CATG	2 cut(s)	132, 195
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	332, 496
NspI	RCATGY	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 234
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	6 cut(s)	83, 103, 106, 246, 310, 446
Psp124BI	GAGCTC	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	496
PspFI	CCCAGC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	2 cut(s)	104, 444
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	5 cut(s)	64, 142, 154, 326, 465
RsaNI	GTAC	5 cut(s)	63, 141, 153, 325, 464
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	6 cut(s)	82, 102, 105, 245, 309, 445
Sau3AI	GATC	2 cut(s)	36, 369
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	3 cut(s)	64, 142, 154
SduI	GDGCHC	2 cut(s)	137, 379
SetI	ASST	6 cut(s)	23, 73, 106, 137, 231, 503
SfaNI	GCATC	3 cut(s)	47, 282, 295
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	233
SpeI	ACTAGT	1 cut(s)	146
SphI	GCATGC	1 cut(s)	195
Sse9I	AATT	3 cut(s)	385, 401, 424
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	2 cut(s)	147, 502
SstI	GAGCTC	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	357
TasI	AATT	3 cut(s)	385, 401, 424
TatI	WGTACW	3 cut(s)	62, 140, 152
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	355, 379
TseFI	GTSAC	2 cut(s)	332, 496
TseI	GCWGC	6 cut(s)	81, 101, 104, 244, 308, 444
Tsp45I	GTSAC	2 cut(s)	332, 496
TspDTI	ATGAA	1 cut(s)	99
TspRI	CASTG	2 cut(s)	355, 379
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	147, 502
ZrmI	AGTACT	3 cut(s)	64, 142, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.