FvH4_5g08790

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000824
Physical Location & Seq
Reverse (-)
5039826 .. 5040350
525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08790.t1

Sequence Viewer

Length: 525 bp
ATGGATATGATGAAGGCAATTACGTCGACAAAGAAACTGATCAGCAAGGCTTGGAGGCTATGCGCTGCTTCACCAAAACAAACCGGCAGCGAAGGGTGCACAACATCCAGTTCAAGGAGTTGCAGTGCTAGCAATGACAAACGGAAGAAGAAGAACAAGGCCGGAAAAGTAACTCCGGTGGGGTATTTCTCAGTCTACGTCGGACCTGAAAAACAACGGTTTGCGTTGAAGATGGAGTATGTTAATCATCCGTTGTTCAAGGTGCTGTTAGAGGATGCAGCATTGGAGTATGGATACAGAAATGATGGTCCGCTTTTGCTTCCTTGTGATGTGGATTTGTTCTACAATGTTTTGGCAGAGATAGAGAGCATGGATGACATCGATGAGGAAATGATCAGTTCCAATCGGTCTTTGATACAAATTTTGTTTAGTCCAATTCATTCAAATTCAAGAATGAACAAGGGTTATGGTGGTGGCTATAGGCTTCTTAGTACATCACCAAAGCTTAAGATGACTAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

175

Amino Acids

19.47

Weight (kDa)

9.3

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 27 - 119 5.2e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 26, 195
AciI CCGC 1 cut(s) 311
AcsI RAATTY 2 cut(s) 420, 445
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 1 cut(s) 114
AflII CTTAAG 1 cut(s) 506
AgsI TTSAA 5 cut(s) 114, 229, 259, 444, 450
AluBI AGCT 1 cut(s) 505
AluI AGCT 1 cut(s) 505
Alw21I GWGCWC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 97
AoxI GGCC 1 cut(s) 159
ApaLI GTGCAC 1 cut(s) 97
ApeKI GCWGC 3 cut(s) 65, 87, 278
ApoI RAATTY 2 cut(s) 420, 445
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 203, 308
AsuHPI GGTGA 2 cut(s) 63, 489
AsuNHI GCTAGC 1 cut(s) 128
AvaII GGWCC 2 cut(s) 203, 308
BaeGI GKGCMC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 52, 99, 290
BccI CCATC 2 cut(s) 226, 299
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciVI GTATCC 1 cut(s) 287
BclI TGATCA 2 cut(s) 39, 393
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 478
BfrI CTTAAG 1 cut(s) 506
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 3 cut(s) 66, 88, 279
BlsI GCNGC 3 cut(s) 67, 89, 280
Bme18I GGWCC 2 cut(s) 203, 308
BmgT120I GGNCC 2 cut(s) 203, 308
BmsI GCATC 1 cut(s) 265
BmtI GCTAGC 1 cut(s) 132
Bsa29I ATCGAT 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 381
BseGI GGATG 4 cut(s) 104, 247, 280, 379
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 3 cut(s) 52, 99, 290
BshFI GGCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 3 cut(s) 84, 162, 176
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 39, 393
BspACI CCGC 1 cut(s) 311
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 203
BspDI ATCGAT 1 cut(s) 381
BspOI GCTAGC 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 83
BssMI GATC 2 cut(s) 39, 393
Bst4CI ACNGT 1 cut(s) 219
BstAFI CTTAAG 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 3 cut(s) 190, 488, 516
BstF5I GGATG 4 cut(s) 104, 247, 280, 379
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 42, 396
BstMBI GATC 2 cut(s) 39, 393
BstMWI GCNNNNNNNGC 2 cut(s) 96, 129
BstSFI CTRYAG 1 cut(s) 478
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 52, 99, 290
Bsu15I ATCGAT 1 cut(s) 381
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 161
BsuTUI ATCGAT 1 cut(s) 381
BtsCI GGATG 4 cut(s) 104, 247, 280, 379
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 203, 308
ClaI ATCGAT 1 cut(s) 381
Csp6I GTAC 1 cut(s) 492
CviAII CATG 1 cut(s) 370
CviJI RGCY 6 cut(s) 50, 58, 161, 477, 484, 505
CviKI_1 RGCY 6 cut(s) 50, 58, 161, 477, 484, 505
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 3 cut(s) 190, 488, 516
DpnI GATC 2 cut(s) 41, 395
DpnII GATC 2 cut(s) 39, 393
Eco47I GGWCC 2 cut(s) 203, 308
FaeI CATG 1 cut(s) 373
FaiI YATR 7 cut(s) 8, 61, 240, 291, 371, 468, 480
FatI CATG 1 cut(s) 369
FbaI TGATCA 2 cut(s) 39, 393
FblI GTMKAC 2 cut(s) 26, 195
Fnu4HI GCNGC 3 cut(s) 66, 88, 279
FokI GGATG 4 cut(s) 91, 234, 287, 386
Fsp4HI GCNGC 3 cut(s) 66, 88, 279
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 66, 88, 279
HaeIII GGCC 1 cut(s) 161
HapII CCGG 3 cut(s) 84, 162, 176
HhaI GCGC 1 cut(s) 65
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 503
HpaII CCGG 3 cut(s) 84, 162, 176
HphI GGTGA 2 cut(s) 63, 489
Hpy166II GTNNAC 3 cut(s) 27, 99, 196
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 1 cut(s) 450
Hpy8I GTNNAC 3 cut(s) 27, 99, 196
Hpy99I CGWCG 2 cut(s) 28, 203
HpyAV CCTTC 2 cut(s) 7, 86
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 23, 198
HpyCH4V TGCA 3 cut(s) 99, 123, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 129
HpyF3I CTNAG 3 cut(s) 190, 488, 516
HpySE526I ACGT 2 cut(s) 23, 198
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 63
Ksp22I TGATCA 2 cut(s) 39, 393
Kzo9I GATC 2 cut(s) 39, 393
LpnPI CCDG 5 cut(s) 97, 121, 175, 189, 219
Lsp1109I GCAGC 3 cut(s) 52, 99, 290
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 129
MaeII ACGT 2 cut(s) 23, 198
MaeIII GTNAC 1 cut(s) 169
MalI GATC 2 cut(s) 41, 395
MboI GATC 2 cut(s) 39, 393
MboII GAAGA 4 cut(s) 157, 160, 163, 241
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 4 cut(s) 18, 420, 435, 445
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 3 cut(s) 48, 265, 379
MseI TTAA 2 cut(s) 243, 507
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 3 cut(s) 84, 162, 176
MwoI GCNNNNNNNGC 2 cut(s) 96, 129
NdeII GATC 2 cut(s) 39, 393
NheI GCTAGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 373
PkrI GCNGC 3 cut(s) 67, 89, 280
PspPI GGNCC 2 cut(s) 203, 308
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SalI GTCGAC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 243, 507
SatI GCNGC 3 cut(s) 66, 88, 279
Sau3AI GATC 2 cut(s) 39, 393
Sau96I GGNCC 2 cut(s) 203, 308
SduI GDGCHC 1 cut(s) 101
SetI ASST 5 cut(s) 26, 201, 208, 264, 507
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 478
SinI GGWCC 2 cut(s) 203, 308
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 4 cut(s) 18, 420, 435, 445
SsiI CCGC 1 cut(s) 311
SspMI CTAG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 2 cut(s) 26, 201
TaqI TCGA 2 cut(s) 26, 381
TaqII GACCGA 1 cut(s) 396
TasI AATT 4 cut(s) 18, 420, 435, 445
TatI WGTACW 1 cut(s) 491
Tru1I TTAA 2 cut(s) 243, 507
Tru9I TTAA 2 cut(s) 243, 507
TscAI CASTG 1 cut(s) 130
TseI GCWGC 3 cut(s) 65, 87, 278
TspDTI ATGAA 3 cut(s) 26, 428, 470
TspGWI ACGGA 2 cut(s) 157, 240
TspRI CASTG 1 cut(s) 130
Vha464I CTTAAG 1 cut(s) 506
VneI GTGCAC 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 203, 308
XapI RAATTY 2 cut(s) 420, 445
XmiI GTMKAC 2 cut(s) 26, 195
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.