Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Forward (+)

23585167 .. 23586506

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G221300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATGAAGGAAAAGGGTAAGAAGGGCTTGATAGTCAAAACCTGGGAGCGATGCAAATCAATAGGCCGTGGCCGCAACATGACTACTACCACTACTACTATGGTGCCTTCTCTGACAATCAAGAGCAGGTCCTGCCCGCATATCAACCTCGGGGTCCCCAAAAGGGAAGAGAAGCGCGCCAGCAGGCGCCAAGTCGCTCCAGAGGGCTGCTTCTCCGTCTACGTGGGACCCCAAAAGCAAAAGTTCGTGGTGAAAACCGAATATGCAAACCATCCTCTCTTCAAGATGCTACTTGAAGAAGCTGAGTCGGAATTCGGGTACGACAGCCAAGGTCCTCTTGTGCTGCCTTGTAACGTTGAAGTGTTCTACAAGGTGCTGATGGAAATGGACGATTGTGGTAACCCAAAGGTTCCTCAAGGGTGTGGCTTGGCTAAGCGTTATGGCTCTTACCATCTTCTTAGCCCGTCTCGGATGGTTGCTATAAATCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

165

Amino Acids

18.52

Weight (kDa)

9.51

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AccB1I	GGYRCC	2 cut(s)	103, 186
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	73, 137
AclI	AACGTT	1 cut(s)	354
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	283, 296, 359
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	471
AlwNI	CAGNNNCTG	1 cut(s)	132
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	64, 70
ApeKI	GCWGC	2 cut(s)	207, 343
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	3 cut(s)	177, 179, 189
AspS9I	GGNCC	4 cut(s)	129, 154, 227, 332
AsuHPI	GGTGA	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	4 cut(s)	129, 154, 227, 332
BanI	GGYRCC	2 cut(s)	103, 186
BbvI	GCAGC	2 cut(s)	194, 330
BccI	CCATC	4 cut(s)	279, 373, 459, 466
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	3 cut(s)	73, 208, 344
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	3 cut(s)	74, 209, 345
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	4 cut(s)	129, 154, 227, 332
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	4 cut(s)	129, 154, 227, 332
BmiI	GGNNCC	7 cut(s)	105, 155, 156, 188, 228, 229, 411
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	2 cut(s)	41, 276
BpmI	CTGGAG	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	4 cut(s)	42, 67, 148, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	4 cut(s)	42, 67, 148, 328
BseGI	GGATG	2 cut(s)	271, 477
BseJI	GATNNNNATC	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	294
BsePI	GCGCGC	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	194, 330
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	66, 72
BshNI	GGYRCC	2 cut(s)	103, 186
BsiHKCI	CYCGRG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	140, 240
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	471
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	2 cut(s)	140, 240
BsnI	GGCC	2 cut(s)	66, 72
BsoBI	CYCGRG	1 cut(s)	149
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	2 cut(s)	73, 137
BspANI	GGCC	2 cut(s)	66, 72
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	7 cut(s)	105, 155, 156, 188, 228, 229, 411
BspMI	ACCTGC	1 cut(s)	117
BspT107I	GGYRCC	2 cut(s)	103, 186
BssECI	CCNNGG	4 cut(s)	42, 67, 148, 328
BssHII	GCGCGC	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	162, 284
BstACI	GRCGYC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	4 cut(s)	137, 177, 181, 185
BstDEI	CTNAG	3 cut(s)	303, 432, 458
BstDSI	CCRYGG	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	271, 477
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	3 cut(s)	177, 179, 189
BstMAI	GTCTC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 132
BstNI	CCWGG	1 cut(s)	43
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	194, 330
BsuRI	GGCC	2 cut(s)	66, 72
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	271, 477
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	4 cut(s)	137, 177, 181, 185
CaiI	CAGNNNCTG	1 cut(s)	132
CfoI	GCGC	3 cut(s)	177, 179, 189
Cfr13I	GGNCC	4 cut(s)	129, 154, 227, 332
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	3 cut(s)	303, 432, 458
DinI	GGCGCC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	162, 284
EarI	CTCTTC	2 cut(s)	162, 284
Eco130I	CCWWGG	1 cut(s)	328
Eco47I	GGWCC	4 cut(s)	129, 154, 227, 332
Eco88I	CYCGRG	1 cut(s)	149
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	4 cut(s)	129, 154, 227, 332
EcoO65I	GGTNACC	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	328
EgeI	GGCGCC	1 cut(s)	188
EheI	GGCGCC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	1 cut(s)	82
FaiI	YATR	6 cut(s)	80, 101, 141, 264, 441, 482
FalI	AAGNNNNNCTT	4 cut(s)	11, 43, 321, 353
FaqI	GGGAC	2 cut(s)	140, 240
FatI	CATG	1 cut(s)	78
FauI	CCCGC	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	73, 208, 344
FokI	GGATG	2 cut(s)	258, 484
Fsp4HI	GCNGC	3 cut(s)	73, 208, 344
GlaI	GCGC	3 cut(s)	176, 178, 188
GluI	GCNGC	3 cut(s)	73, 208, 344
GsuI	CTGGAG	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	66, 72
HhaI	GCGC	3 cut(s)	177, 179, 189
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	3 cut(s)	175, 177, 187
HinP1I	GCGC	3 cut(s)	175, 177, 187
HinfI	GANTC	1 cut(s)	305
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	4 cut(s)	114, 310, 471, 494
Hpy188III	TCNNGA	3 cut(s)	121, 200, 283
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	16, 117
HpyCH4IV	ACGT	2 cut(s)	222, 354
HpyCH4V	TGCA	2 cut(s)	54, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 132
HpyF3I	CTNAG	3 cut(s)	303, 432, 458
HpySE526I	ACGT	2 cut(s)	222, 354
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	3 cut(s)	175, 177, 187
KasI	GGCGCC	1 cut(s)	186
KflI	GGGWCCC	2 cut(s)	154, 227
LmnI	GCTCC	2 cut(s)	46, 202
LpnPI	CCDG	7 cut(s)	28, 55, 112, 145, 169, 193, 213
Lsp1109I	GCAGC	2 cut(s)	194, 330
LweI	GCATC	2 cut(s)	41, 276
MaeII	ACGT	2 cut(s)	222, 354
MaeIII	GTNAC	2 cut(s)	350, 398
MboII	GAAGA	4 cut(s)	179, 271, 308, 446
MluCI	AATT	1 cut(s)	311
Mly113I	GGCGCC	1 cut(s)	187
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	5 cut(s)	158, 196, 285, 345, 423
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	72, 132
NarI	GGCGCC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	7 cut(s)	105, 155, 156, 188, 228, 229, 411
PauI	GCGCGC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	74, 209, 345
PleI	GAGTC	1 cut(s)	313
PluTI	GGCGCC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	223
PpuMI	RGGWCCY	4 cut(s)	129, 154, 227, 332
Psp1406I	AACGTT	1 cut(s)	354
Psp5II	RGGWCCY	4 cut(s)	129, 154, 227, 332
Psp6I	CCWGG	1 cut(s)	41
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	7 cut(s)	105, 155, 156, 188, 228, 229, 411
PspPI	GGNCC	4 cut(s)	129, 154, 227, 332
PspPPI	RGGWCCY	4 cut(s)	129, 154, 227, 332
PstNI	CAGNNNCTG	1 cut(s)	132
PteI	GCGCGC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SatI	GCNGC	3 cut(s)	73, 208, 344
Sau96I	GGNCC	4 cut(s)	129, 154, 227, 332
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	9 cut(s)	44, 131, 150, 225, 304, 334, 357, 375, 411
SfaNI	GCATC	2 cut(s)	41, 276
SfoI	GGCGCC	1 cut(s)	188
SinI	GGWCC	4 cut(s)	129, 154, 227, 332
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	2 cut(s)	73, 137
SspDI	GGCGCC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	328
TaiI	ACGT	2 cut(s)	225, 357
TasI	AATT	1 cut(s)	311
TauI	GCSGC	1 cut(s)	75
TseI	GCWGC	2 cut(s)	207, 343
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	205
VpaK11BI	GGWCC	4 cut(s)	129, 154, 227, 332
XapI	RAATTY	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.