Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

5044747 .. 5045307

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATATCGAGAAGGGAAAGTGGACGAAGAATCTGATCATCAAGGCGTGGAAGCGATGCAGTACTCTACCGAGACAAAGCAGCAGCAAAGCGTCTACTGCGGCAGCTTCACTGACAAGGAGCAAATCATGGAGCTCCAGTAGTACTAATAATACTGGCACTTGGAAACAGAAGAAGAACAAGGCCAAGACATGCAAAGTCGCTCCGGTCGGATGTTTCACAGTCTACGTCGGACCCGAAAAGCAGCGATTTGTGGTGAGGATGGAGTTTGTTAACCATCCATTGTTCAAGACGCTGCTGGAGGATGCGGCATTGGAGTATGGCTACAAAAGTGACGGTCCAATTTTGCTTCCTTGCGATGTGGATCTGTTCTGCAATGTTTTGGCACAGATGGAGAGCGATGATATTGATGAGGATATGGTTGGCGTTTCCAGTACTTGTTCTCCTATAAGCTTCAGTCCAGCTCGTCGTAGAAATAATTGTGGCAGCAACAGAGGTTACGGCGGTTCTTATAGGATGCTCACTCCAACCTCATCGTCATCATCAATGGTGGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

187

Amino Acids

20.46

Weight (kDa)

9.38

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	43 - 129	8.2e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	95, 225
AciI	CCGC	3 cut(s)	101, 308, 504
AclWI	GGATC	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	439
AfaI	GTAC	3 cut(s)	64, 145, 436
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	4 cut(s)	107, 135, 453, 464
AluI	AGCT	4 cut(s)	107, 135, 453, 464
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	6 cut(s)	81, 84, 104, 244, 295, 486
AspS9I	GGNCC	2 cut(s)	233, 338
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	233, 338
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	6 cut(s)	93, 96, 116, 256, 282, 498
BccI	CCATC	3 cut(s)	256, 285, 385
BceAI	ACGGC	1 cut(s)	517
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	67
BisI	GCNGC	8 cut(s)	82, 85, 102, 105, 245, 296, 309, 487
BlsI	GCNGC	8 cut(s)	83, 86, 103, 106, 246, 297, 310, 488
BmcAI	AGTACT	3 cut(s)	64, 145, 436
Bme18I	GGWCC	2 cut(s)	233, 338
BmgT120I	GGNCC	2 cut(s)	233, 338
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	3 cut(s)	47, 295, 507
BpmI	CTGGAG	2 cut(s)	121, 320
BsaBI	GATNNNNATC	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 427, 457
Bse1I	ACTGG	3 cut(s)	138, 160, 432
Bse3DI	GCAATG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	363
BseGI	GGATG	5 cut(s)	218, 267, 277, 310, 522
BseJI	GATNNNNATC	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	382
BseNI	ACTGG	3 cut(s)	138, 160, 432
BseXI	GCAGC	6 cut(s)	93, 96, 116, 256, 282, 498
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	36, 364
BspACI	CCGC	3 cut(s)	101, 308, 504
BspANI	GGCC	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	138, 160, 432
BssMI	GATC	2 cut(s)	36, 364
Bst4CI	ACNGT	2 cut(s)	223, 338
BstDEI	CTNAG	1 cut(s)	558
BstF5I	GGATG	5 cut(s)	218, 267, 277, 310, 522
BstKTI	GATC	2 cut(s)	39, 367
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	2 cut(s)	36, 364
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	195
BstV1I	GCAGC	6 cut(s)	93, 96, 116, 256, 282, 498
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	185
BtgZI	GCGATG	3 cut(s)	70, 372, 414
BtsCI	GGATG	5 cut(s)	218, 267, 277, 310, 522
BtsIMutI	CAGTG	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	233, 338
CseI	GACGC	2 cut(s)	81, 301
Csp6I	GTAC	3 cut(s)	63, 144, 435
CviAII	CATG	2 cut(s)	129, 192
CviJI	RGCY	6 cut(s)	107, 135, 185, 324, 453, 464
CviKI_1	RGCY	6 cut(s)	107, 135, 185, 324, 453, 464
CviQI	GTAC	3 cut(s)	63, 144, 435
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	2 cut(s)	38, 366
DpnII	GATC	2 cut(s)	36, 364
Ecl136II	GAGCTC	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	233, 338
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	439
EcoICRI	GAGCTC	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	137
FaeI	CATG	2 cut(s)	132, 195
FaiI	YATR	6 cut(s)	130, 193, 321, 419, 449, 513
FatI	CATG	2 cut(s)	128, 191
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	2 cut(s)	95, 225
Fnu4HI	GCNGC	8 cut(s)	82, 85, 102, 105, 245, 296, 309, 487
FokI	GGATG	5 cut(s)	225, 264, 274, 317, 529
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	8 cut(s)	82, 85, 102, 105, 245, 296, 309, 487
GluI	GCNGC	8 cut(s)	82, 85, 102, 105, 245, 296, 309, 487
GsuI	CTGGAG	2 cut(s)	121, 320
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	2 cut(s)	81, 301
Hin1II	CATG	2 cut(s)	132, 195
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	1 cut(s)	31
HpaI	GTTAAC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	4 cut(s)	24, 96, 226, 274
Hpy188I	TCNGA	3 cut(s)	36, 212, 233
Hpy188III	TCNNGA	2 cut(s)	10, 289
Hpy8I	GTNNAC	4 cut(s)	24, 96, 226, 274
Hpy99I	CGWCG	2 cut(s)	233, 471
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	223, 338
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	60, 195, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	132, 195
Ksp22I	TGATCA	1 cut(s)	36
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	36, 364
LmnI	GCTCC	4 cut(s)	120, 132, 140, 208
LpnPI	CCDG	6 cut(s)	141, 151, 219, 284, 445, 474
Lsp1109I	GCAGC	6 cut(s)	93, 96, 116, 256, 282, 498
LweI	GCATC	3 cut(s)	47, 295, 507
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	332, 497
MalI	GATC	2 cut(s)	38, 366
MboI	GATC	2 cut(s)	36, 364
MboII	GAAGA	3 cut(s)	40, 184, 187
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	2 cut(s)	342, 478
MmeI	TCCRAC	3 cut(s)	190, 211, 551
MnlI	CCTC	5 cut(s)	252, 295, 406, 488, 541
MseI	TTAA	1 cut(s)	273
MspI	CCGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	2 cut(s)	36, 364
NlaIII	CATG	2 cut(s)	132, 195
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	8 cut(s)	83, 86, 103, 106, 246, 297, 310, 488
Psp124BI	GAGCTC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	233, 338
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	3 cut(s)	64, 145, 436
RsaNI	GTAC	3 cut(s)	63, 144, 435
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	8 cut(s)	82, 85, 102, 105, 245, 296, 309, 487
Sau3AI	GATC	2 cut(s)	36, 364
Sau96I	GGNCC	2 cut(s)	233, 338
ScaI	AGTACT	3 cut(s)	64, 145, 436
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	7 cut(s)	109, 137, 231, 455, 466, 499, 533
SfaNI	GCATC	3 cut(s)	47, 295, 507
SinI	GGWCC	2 cut(s)	233, 338
Sse9I	AATT	2 cut(s)	342, 478
SsiI	CCGC	3 cut(s)	101, 308, 504
SstI	GAGCTC	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	223, 338
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	9
TasI	AATT	2 cut(s)	342, 478
TatI	WGTACW	3 cut(s)	62, 143, 434
TauI	GCSGC	2 cut(s)	104, 311
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	6 cut(s)	81, 84, 104, 244, 295, 486
Tsp45I	GTSAC	1 cut(s)	332
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	2 cut(s)	233, 338
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	2 cut(s)	95, 225
ZrmI	AGTACT	3 cut(s)	64, 145, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.