Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Forward (+)

3161304 .. 3161885

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATATCGTGAAGGGAAGGCGGATGAAGAATCTGATCATCAAGGCGTGGAAGCGATGCAGTACTTTACCTAAACAAAGCAGCACGAAAGGCTCTACAGCAGCCGCTTCATTGACAAGAAGCAAATCATGGAGCTCCAGTACTACTAGTAGTACTGGCACTTGCAAGCAGAAGAAGAACAAGGGCAAGGCATGCCAAGTCGCTCCGGCTGGGTGTTTCACAGTCTACGTTGGACCCGAAAAGCAGCGATTTGTGGTGAGGATGGAGTTTCTTAATCATCCATTGTTCAGGATGCTGTTGGAGGATGCAGCATTGGAGTATGGGTACAAAAGTGACGGTCCGATATTGCTTCCTTGCCATGTGGATCTGTTCTGCAATGTTATGGCAGAGATTGAGAGCAATGATATTAATGAGTATAGGATCAGTGCTCCCAGTAATTGTTCTCCGACAAACTTCAGTCCGGCTCGTCGTAGAAATTGTGCCAGCAACAGAGGTTACGGTGGTGCTTATAGGGTATACTTACTCCAACATCGTCATCATCAATGGTGGTTACCTAGATTTGATTTTAACATATATACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

193

Amino Acids

21.91

Weight (kDa)

9.76

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	43 - 129	1.4e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	225, 516
AciI	CCGC	2 cut(s)	22, 105
AclWI	GGATC	2 cut(s)	372, 428
AcuI	CTGAAG	1 cut(s)	439
AfaI	GTAC	4 cut(s)	64, 142, 154, 326
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Alw21I	GWGCWC	2 cut(s)	137, 430
AlwI	GGATC	2 cut(s)	372, 428
ApeKI	GCWGC	4 cut(s)	81, 101, 244, 308
AseI	ATTAAT	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	233, 338
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	233, 338
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	137, 430
BbvI	GCAGC	4 cut(s)	93, 113, 256, 320
BccI	CCATC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	36
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	147, 555
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
BlsI	GCNGC	5 cut(s)	83, 103, 106, 246, 310
BmcAI	AGTACT	3 cut(s)	64, 142, 154
Bme18I	GGWCC	2 cut(s)	233, 338
BmgT120I	GGNCC	2 cut(s)	233, 338
BmiI	GGNNCC	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	3 cut(s)	47, 282, 295
BmuI	ACTGGG	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	121
BsaAI	YACGTR	1 cut(s)	579
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 308, 338
Bse1I	ACTGG	3 cut(s)	138, 160, 432
Bse3DI	GCAATG	2 cut(s)	382, 406
BseGI	GGATG	5 cut(s)	30, 267, 277, 297, 310
BseMI	GCAATG	2 cut(s)	382, 406
BseNI	ACTGG	3 cut(s)	138, 160, 432
BseXI	GCAGC	4 cut(s)	93, 113, 256, 320
BseYI	CCCAGC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	137, 430
BsiSI	CCGG	2 cut(s)	206, 461
Bsp1286I	GDGCHC	2 cut(s)	137, 430
Bsp143I	GATC	3 cut(s)	36, 364, 420
BspACI	CCGC	2 cut(s)	22, 105
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	372, 428
BsrDI	GCAATG	2 cut(s)	382, 406
BsrI	ACTGG	3 cut(s)	138, 160, 432
BssMI	GATC	3 cut(s)	36, 364, 420
BssNAI	GTATAC	1 cut(s)	517
Bst1107I	GTATAC	1 cut(s)	517
Bst4CI	ACNGT	3 cut(s)	223, 338, 500
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	167, 193, 484
BstEII	GGTNACC	1 cut(s)	549
BstF5I	GGATG	5 cut(s)	30, 267, 277, 297, 310
BstKTI	GATC	3 cut(s)	39, 367, 423
BstMBI	GATC	3 cut(s)	36, 364, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 192
BstNSI	RCATGY	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	96
BstSNI	TACGTA	1 cut(s)	579
BstV1I	GCAGC	4 cut(s)	93, 113, 256, 320
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BstZ17I	GTATAC	1 cut(s)	517
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	5 cut(s)	30, 267, 277, 297, 310
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	3 cut(s)	167, 193, 484
Cfr13I	GGNCC	2 cut(s)	233, 338
CpoI	CGGWCCG	1 cut(s)	338
Csp6I	GTAC	4 cut(s)	63, 141, 153, 325
CspI	CGGWCCG	1 cut(s)	338
CviAII	CATG	3 cut(s)	129, 192, 359
CviJI	RGCY	5 cut(s)	93, 104, 135, 209, 464
CviKI_1	RGCY	5 cut(s)	93, 104, 135, 209, 464
CviQI	GTAC	4 cut(s)	63, 141, 153, 325
DpnI	GATC	3 cut(s)	38, 366, 422
DpnII	GATC	3 cut(s)	36, 364, 420
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	135
Eco105I	TACGTA	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	233, 338
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	439
Eco91I	GGTNACC	1 cut(s)	549
EcoICRI	GAGCTC	1 cut(s)	135
EcoO65I	GGTNACC	1 cut(s)	549
EcoRV	GATATC	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	137
FaeI	CATG	3 cut(s)	132, 195, 362
FatI	CATG	3 cut(s)	128, 191, 358
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	2 cut(s)	225, 516
Fnu4HI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
FokI	GGATG	5 cut(s)	37, 264, 274, 304, 317
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
FspBI	CTAG	2 cut(s)	147, 555
GluI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	121
HapII	CCGG	2 cut(s)	206, 461
Hin1II	CATG	3 cut(s)	132, 195, 362
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	2 cut(s)	206, 461
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	226, 517
Hpy188I	TCNGA	3 cut(s)	36, 342, 447
Hpy188III	TCNNGA	2 cut(s)	10, 289
Hpy8I	GTNNAC	2 cut(s)	226, 517
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	2 cut(s)	7, 12
HpyCH4III	ACNGT	3 cut(s)	223, 338, 500
HpyCH4IV	ACGT	2 cut(s)	228, 578
HpyCH4V	TGCA	4 cut(s)	60, 165, 308, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 192
HpySE526I	ACGT	2 cut(s)	228, 578
Hsp92II	CATG	3 cut(s)	132, 195, 362
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	36, 364, 420
LmnI	GCTCC	4 cut(s)	132, 140, 208, 433
LpnPI	CCDG	8 cut(s)	141, 151, 195, 219, 274, 445, 474, 496
Lsp1109I	GCAGC	4 cut(s)	93, 113, 256, 320
LweI	GCATC	3 cut(s)	47, 282, 295
MaeI	CTAG	2 cut(s)	147, 555
MaeII	ACGT	2 cut(s)	228, 578
MaeIII	GTNAC	3 cut(s)	332, 494, 549
MalI	GATC	3 cut(s)	38, 366, 422
MboI	GATC	3 cut(s)	36, 364, 420
MboII	GAAGA	3 cut(s)	40, 184, 187
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	137, 430
MluCI	AATT	2 cut(s)	436, 475
MmeI	TCCRAC	4 cut(s)	211, 279, 470, 550
MnlI	CCTC	3 cut(s)	252, 295, 485
MseI	TTAA	3 cut(s)	273, 408, 567
MspI	CCGG	2 cut(s)	206, 461
MwoI	GCNNNNNNNGC	2 cut(s)	90, 192
NdeII	GATC	3 cut(s)	36, 364, 420
NlaIII	CATG	3 cut(s)	132, 195, 362
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	83, 103, 106, 246, 310
Ppu21I	YACGTR	1 cut(s)	579
PshBI	ATTAAT	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	233, 338
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	4 cut(s)	64, 142, 154, 326
RsaNI	GTAC	4 cut(s)	63, 141, 153, 325
Rsr2I	CGGWCCG	1 cut(s)	338
RsrII	CGGWCCG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	273, 408, 567
SatI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
Sau3AI	GATC	3 cut(s)	36, 364, 420
Sau96I	GGNCC	2 cut(s)	233, 338
ScaI	AGTACT	3 cut(s)	64, 142, 154
SduI	GDGCHC	2 cut(s)	137, 430
SetI	ASST	6 cut(s)	73, 137, 231, 496, 556, 581
SfaNI	GCATC	3 cut(s)	47, 282, 295
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	2 cut(s)	233, 338
SnaBI	TACGTA	1 cut(s)	579
SpeI	ACTAGT	1 cut(s)	146
SphI	GCATGC	1 cut(s)	195
Sse9I	AATT	2 cut(s)	436, 475
SsiI	CCGC	2 cut(s)	22, 105
SspMI	CTAG	2 cut(s)	147, 555
SstI	GAGCTC	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	223, 338, 500
TaiI	ACGT	2 cut(s)	231, 581
TasI	AATT	2 cut(s)	436, 475
TatI	WGTACW	3 cut(s)	62, 140, 152
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	3 cut(s)	273, 408, 567
Tru9I	TTAA	3 cut(s)	273, 408, 567
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	4 cut(s)	81, 101, 244, 308
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	41, 99
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	2 cut(s)	233, 338
VspI	ATTAAT	1 cut(s)	408
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	2 cut(s)	225, 516
XspI	CTAG	2 cut(s)	147, 555
ZrmI	AGTACT	3 cut(s)	64, 142, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.