Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Forward (+)

13508896 .. 13509615

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G147100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATGTCATAAAAGGGAAGTGGAGCAAGAACTTGATTGCCAAAGCATGGAGGAGATGCAGCTTACAAAGAGAGAGCAGCAACAAAGGGTTCAAGCTCAGCTCACTGACCAAGAGCAAGTCATGGGATTGCAGCTTCGGTAATAGAAAGAAGAGCAAAGGCCAAGTAGCTCCAAATGGGTGCTTTTCAGTTTATGTTGGGCCTCAAAGACAACGGTTTGCGGTGAAGACGGAGTTTGCGAATCACCCGTTGTTTAAGATGTTGTTGGAGGATGCTGAGACTGAATACGGGTACAATTGGGAAGGGCCGATTTTGCTTCCTTGTGATGTGGATTTGTTTGTCAAAGTGTTGGCTGAGATGGAGTGTACTGAGAAGGATGTTGGCACTCCAAATTGCGGGTTTGTTAATTATGGTTCTTTGATACTTCGTAGCCCGGCTCGTCATCTAAGCTCGAGTATTAACAACGGTTATGGTGGTGCTTATAGACTGCTTAGTCCGTCGAGAATGCTTAAGATAAATCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

176

Amino Acids

19.73

Weight (kDa)

9.51

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	48
AciI	CCGC	2 cut(s)	221, 396
AfaI	GTAC	2 cut(s)	293, 367
AfiI	CCNNNNNNNGG	2 cut(s)	48, 395
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	6 cut(s)	63, 97, 102, 135, 170, 450
AluI	AGCT	6 cut(s)	63, 97, 102, 135, 170, 450
Alw26I	GTCTC	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	3 cut(s)	160, 200, 305
ApeKI	GCWGC	3 cut(s)	60, 78, 132
AspS9I	GGNCC	2 cut(s)	200, 305
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	235, 236
AvaI	CYCGRG	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	72, 90, 144
BccI	CCATC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	272
BfrI	CTTAAG	1 cut(s)	509
BisI	GCNGC	3 cut(s)	61, 79, 133
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	3 cut(s)	62, 80, 134
Bme1390I	CCNGG	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	200, 305
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	47, 262
BpiI	GAAGAC	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 395
BseGI	GGATG	3 cut(s)	10, 277, 382
BseLI	CCNNNNNNNGG	2 cut(s)	48, 395
BseMII	CTCAG	4 cut(s)	112, 267, 345, 360
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	3 cut(s)	72, 90, 144
BshFI	GGCC	3 cut(s)	162, 202, 307
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	434
BslI	CCNNNNNNNGG	2 cut(s)	48, 395
BsmAI	GTCTC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	162, 202, 307
BsoBI	CYCGRG	1 cut(s)	451
Bsp1720I	GCTNAGC	1 cut(s)	98
BspACI	CCGC	2 cut(s)	221, 396
BspANI	GGCC	3 cut(s)	162, 202, 307
BspCNI	CTCAG	4 cut(s)	111, 268, 346, 361
BspQI	GCTCTTC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	216, 467
Bst6I	CTCTTC	1 cut(s)	146
BstAFI	CTTAAG	1 cut(s)	509
BstDEI	CTNAG	6 cut(s)	98, 276, 354, 369, 446, 491
BstF5I	GGATG	3 cut(s)	10, 277, 382
BstMAI	GTCTC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	432
BstV1I	GCAGC	3 cut(s)	72, 90, 144
BstV2I	GAAGAC	1 cut(s)	233
BsuRI	GGCC	3 cut(s)	162, 202, 307
BtsCI	GGATG	3 cut(s)	10, 277, 382
BtsIMutI	CAGTG	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	200, 305
Csp6I	GTAC	2 cut(s)	292, 366
CviAII	CATG	2 cut(s)	48, 123
CviQI	GTAC	2 cut(s)	292, 366
DdeI	CTNAG	6 cut(s)	98, 276, 354, 369, 446, 491
DrdI	GACNNNNNNGTC	1 cut(s)	492
DseDI	GACNNNNNNGTC	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	451
FaeI	CATG	2 cut(s)	51, 126
FaiI	YATR	7 cut(s)	11, 49, 124, 195, 411, 471, 483
FatI	CATG	2 cut(s)	47, 122
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	3 cut(s)	61, 79, 133
FokI	GGATG	3 cut(s)	17, 284, 389
Fsp4HI	GCNGC	3 cut(s)	61, 79, 133
GluI	GCNGC	3 cut(s)	61, 79, 133
HaeIII	GGCC	3 cut(s)	162, 202, 307
HapII	CCGG	1 cut(s)	434
Hin1II	CATG	2 cut(s)	51, 126
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	235, 236
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	1 cut(s)	366
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	2 cut(s)	296, 367
HpyCH4III	ACNGT	2 cut(s)	216, 467
HpyCH4V	TGCA	2 cut(s)	60, 132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	6 cut(s)	98, 276, 354, 369, 446, 491
Hsp92II	CATG	2 cut(s)	51, 126
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	2 cut(s)	24, 175
LpnPI	CCDG	1 cut(s)	447
Lsp1109I	GCAGC	3 cut(s)	72, 90, 144
LweI	GCATC	2 cut(s)	47, 262
MboII	GAAGA	2 cut(s)	163, 238
MfeI	CAATTG	1 cut(s)	295
MluCI	AATT	4 cut(s)	295, 391, 406, 521
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	3 cut(s)	45, 213, 262
MseI	TTAA	5 cut(s)	255, 405, 459, 510, 526
MspCI	CTTAAG	1 cut(s)	509
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	434
MunI	CAATTG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	434
NlaIII	CATG	2 cut(s)	51, 126
PaeR7I	CTCGAG	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	62, 80, 134
PspPI	GGNCC	2 cut(s)	200, 305
PspXI	VCTCGAGB	1 cut(s)	451
RsaI	GTAC	2 cut(s)	293, 367
RsaNI	GTAC	2 cut(s)	292, 366
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	5 cut(s)	255, 405, 459, 510, 526
SatI	GCNGC	3 cut(s)	61, 79, 133
Sau96I	GGNCC	2 cut(s)	200, 305
ScrFI	CCNGG	1 cut(s)	434
SetI	ASST	6 cut(s)	65, 99, 104, 137, 172, 452
SfaNI	GCATC	2 cut(s)	47, 262
Sfr274I	CTCGAG	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	451
SmlI	CTYRAG	2 cut(s)	451, 509
SmoI	CTYRAG	2 cut(s)	451, 509
Sse9I	AATT	4 cut(s)	295, 391, 406, 521
SsiI	CCGC	2 cut(s)	221, 396
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	216, 467
TaqI	TCGA	2 cut(s)	452, 500
TasI	AATT	4 cut(s)	295, 391, 406, 521
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	5 cut(s)	255, 405, 459, 510, 526
Tru9I	TTAA	5 cut(s)	255, 405, 459, 510, 526
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	3 cut(s)	60, 78, 132
TspGWI	ACGGA	2 cut(s)	245, 486
TspRI	CASTG	1 cut(s)	111
Van91I	CCANNNNNTGG	1 cut(s)	48
Vha464I	CTTAAG	1 cut(s)	509
XhoI	CTCGAG	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.