Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Forward (+)

20644525 .. 20645698

Gene Structure 1174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAGAATCCGATATTGAAGACATGGAGAAAAGTGAAGTCTTTTGGGCATACGAGCTCTTCGACCACACCCTCGTTCACGAAGAGCAAGTCTTGCCATGGCTCTTTTCGTCTCGAGGATGCTAAGAGCAACGAATCAAAAGGAAAGCCGAAGAAAGAGTCGCCGTCACATGGATTTTTCACGGTTTACGTTGGTCCCACGAAACAAAGAATTGTTGTGAAGACAAAACTTCTGAACCATCCTTTGTTCAAGAACTTGTTAGAAGATGCTGAGACTGAGTATGGATATAGACGCGATGGACCCATTGTTCTTCCTTGTGAGGTTGACTTCTTCTTCAAGGCTTTGGCGGATATGAAGTCTAATCCTGGTCATCATGATCATGATGATGATTATGATGATGATGATGGTTTCACGAATTCCCCGATTTGCGGATTTGTCTGTAGTCCCTATAGATCATACGGTGGTGGTGTTACGGATCCTCTGGCCATGAAACGGAACGGCTCATACAAGCTTCTTCGATCTCCATCTTTGTTCAAGTTGACTAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

183

Amino Acids

20.65

Weight (kDa)

9.28

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	34 - 115	3.1e-23	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	294
AciI	CCGC	2 cut(s)	347, 429
AclWI	GGATC	2 cut(s)	470, 483
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	1 cut(s)	415
AfiI	CCNNNNNNNGG	3 cut(s)	170, 428, 492
AgsI	TTSAA	4 cut(s)	19, 250, 337, 535
AjnI	CCWGG	1 cut(s)	364
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	2 cut(s)	57, 511
AluI	AGCT	2 cut(s)	57, 511
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	2 cut(s)	116, 266
AlwI	GGATC	2 cut(s)	470, 483
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	483
ApoI	RAATTY	1 cut(s)	415
ArsI	GACNNNNNNTTYG	4 cut(s)	74, 106, 143, 175
AspS9I	GGNCC	2 cut(s)	194, 299
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	194, 299
BalI	TGGCCA	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	26, 227
Bbv12I	GWGCWC	1 cut(s)	59
BccI	CCATC	4 cut(s)	246, 290, 398, 532
BceAI	ACGGC	2 cut(s)	148, 514
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	116, 266
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	2 cut(s)	439, 448
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	2 cut(s)	194, 299
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	194, 299
BmiI	GGNNCC	3 cut(s)	196, 301, 477
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	109, 256
BpiI	GAAGAC	2 cut(s)	26, 227
BsaBI	GATNNNNATC	1 cut(s)	523
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 428, 492
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	124, 238
BseJI	GATNNNNATC	1 cut(s)	523
BseLI	CCNNNNNNNGG	3 cut(s)	170, 428, 492
BseMII	CTCAG	2 cut(s)	261, 267
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	180, 429
BslI	CCNNNNNNNGG	3 cut(s)	170, 428, 492
BsmAI	GTCTC	2 cut(s)	116, 266
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	2 cut(s)	180, 429
BsnI	GGCC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	376, 452, 475, 518
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	347, 429
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	2 cut(s)	262, 268
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	2 cut(s)	373, 379
BspLI	GGNNCC	3 cut(s)	196, 301, 477
BspPI	GGATC	2 cut(s)	470, 483
BspQI	GCTCTTC	2 cut(s)	64, 77
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	4 cut(s)	376, 452, 475, 518
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	184, 461
Bst6I	CTCTTC	2 cut(s)	64, 77
BstAPI	GCANNNNNTGC	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	123, 270, 276
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	124, 238
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	4 cut(s)	379, 455, 478, 521
BstMAI	GTCTC	2 cut(s)	116, 266
BstMBI	GATC	4 cut(s)	376, 452, 475, 518
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	2 cut(s)	439, 448
BstUI	CGCG	1 cut(s)	294
BstV2I	GAAGAC	2 cut(s)	26, 227
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	485
BtgI	CCRYGG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	124, 238
CciI	TCATGA	2 cut(s)	373, 379
Cfr13I	GGNCC	2 cut(s)	194, 299
CseI	GACGC	1 cut(s)	300
CviAII	CATG	6 cut(s)	24, 98, 170, 374, 380, 487
CviJI	RGCY	7 cut(s)	57, 102, 148, 341, 485, 501, 511
CviKI_1	RGCY	7 cut(s)	57, 102, 148, 341, 485, 501, 511
DdeI	CTNAG	3 cut(s)	123, 270, 276
DpnI	GATC	4 cut(s)	378, 454, 477, 520
DpnII	GATC	4 cut(s)	376, 452, 475, 518
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	2 cut(s)	64, 77
EarI	CTCTTC	2 cut(s)	64, 77
EciI	GGCGGA	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	194, 299
Eco53kI	GAGCTC	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	6 cut(s)	27, 101, 173, 377, 383, 490
FaqI	GGGAC	2 cut(s)	180, 429
FatI	CATG	6 cut(s)	23, 97, 169, 373, 379, 486
FbaI	TGATCA	1 cut(s)	376
FokI	GGATG	2 cut(s)	131, 225
FriOI	GRGCYC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	485
HgaI	GACGC	1 cut(s)	300
Hin1II	CATG	6 cut(s)	27, 101, 173, 377, 383, 490
HincII	GTYRAC	2 cut(s)	325, 540
HindII	GTYRAC	2 cut(s)	325, 540
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	7, 134, 158
Hpy166II	GTNNAC	4 cut(s)	78, 187, 325, 540
Hpy188I	TCNGA	2 cut(s)	12, 234
Hpy188III	TCNNGA	6 cut(s)	79, 113, 250, 374, 380, 412
Hpy8I	GTNNAC	4 cut(s)	78, 187, 325, 540
HpyCH4III	ACNGT	2 cut(s)	184, 461
HpyCH4IV	ACGT	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	3 cut(s)	123, 270, 276
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	6 cut(s)	27, 101, 173, 377, 383, 490
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	376, 452, 475, 518
LguI	GCTCTTC	2 cut(s)	64, 77
LpnPI	CCDG	3 cut(s)	351, 378, 467
LweI	GCATC	2 cut(s)	109, 256
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	165, 469
MalI	GATC	4 cut(s)	378, 454, 477, 520
MboI	GATC	4 cut(s)	376, 452, 475, 518
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	2 cut(s)	210, 415
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	82, 109, 313, 489
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MslI	CAYNNNNRTG	2 cut(s)	378, 384
Msp20I	TGGCCA	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	4 cut(s)	376, 452, 475, 518
NlaIII	CATG	6 cut(s)	27, 101, 173, 377, 383, 490
NlaIV	GGNNCC	3 cut(s)	196, 301, 477
NmuCI	GTSAC	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	113
PagI	TCATGA	2 cut(s)	373, 379
PciSI	GCTCTTC	2 cut(s)	64, 77
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 419
PfeI	GAWTC	2 cut(s)	7, 134
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	3 cut(s)	196, 301, 477
PspPI	GGNCC	2 cut(s)	194, 299
PsrI	GAACNNNNNNTAC	2 cut(s)	488, 520
PsuI	RGATCY	1 cut(s)	475
RseI	CAYNNNNRTG	2 cut(s)	378, 384
SacI	GAGCTC	1 cut(s)	59
SapI	GCTCTTC	2 cut(s)	64, 77
Sau3AI	GATC	4 cut(s)	376, 452, 475, 518
Sau96I	GGNCC	2 cut(s)	194, 299
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	4 cut(s)	59, 192, 324, 513
SfaNI	GCATC	2 cut(s)	109, 256
SfcI	CTRYAG	2 cut(s)	439, 448
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	194, 299
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	378, 384
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	210, 415
SsiI	CCGC	2 cut(s)	347, 429
SspMI	CTAG	1 cut(s)	543
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	184, 461
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	62, 114, 517
TasI	AATT	2 cut(s)	210, 415
TfiI	GAWTC	2 cut(s)	7, 134
TseFI	GTSAC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	3 cut(s)	17, 368, 503
TspGWI	ACGGA	2 cut(s)	488, 508
VpaK11BI	GGWCC	2 cut(s)	194, 299
XapI	RAATTY	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	113
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.