Rorug06G0498300

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000824
Physical Location & Seq
Forward (+)
61431900 .. 61434184
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0498300.1

Sequence Viewer

Length: 1620 bp
ATGGAAGAGAGCTTTCAGAAATTGATGGGGATGGAGTTTTTGATTACCAATGTTTCTCTGGTCTCGACCGTTTTCACAGTGCTGGCAATATTGGCTGGAGTTTTGGGCTACTTGTATGCACCATACTGGGGAGTGAGAAGGGTTCCTGGCCCACGAACTATCCCTTTTCTAGGACACCTTCCCTTGCTGGCTAAGCATGGTCCTGATGTGTTCTCAGTTCTTGCCAAACAATATGGCCCTATCTTCAGGTTTCATATGGGTAGACAGCCACTTATAATTGTAGCAGATGCGGAGCTTTGTAGAGAAGTTGGAATCAAGAAATTCAAAGACATCCCAAACAGAAGCATACCATCTCCAATCTCAGGCTCCCCTCTTCACCAAAAGGGTCTCTTTTTCACCAGGGACACAAGATGGTCAACTATGAGAAACACCATATTATCAGTGTATCAACCTTCATACCTAGCTAGCCTTGTTCCCACCATGCAATCATTTATTGAATCTGCAACTCAAAACCTTGATGACTCTTCCAAAAAGGAAGACATTACCTTTTCAAACCTCTCACTCAGATTGGCCACTGACGTAATTGGACAAGCTGCCTTTGGTGTCAACTTTGGCCTTTCAAAATCACACTCCATTAGTGATTCAATCAACAAGATCGATAATGGCCAAGACAAGAATGATGATGAAGTCTCGGACTTTATCAACCAACACATCTATTCCACTACTCAGCTGAAGATGGACTTGTCAGGTTCCGTATCAATCATATTGGGCCTACTCGTCCCCATATTGCAAGAGCCATTTAGGCAAATCTTGAAGAGAATTCCGGGCACTATGGACTGGAAAGTAGACCGGACTAACCAGAATTTGTCTAGCCAGCTTGATGGGATTGTAATGAAGAGAATGAAAGATAGTGAGCGAGGTTCGAAAAATTTCTTGTCGCTCATAATGAATGCAAGGGAGTCAGAAGGGGTAGCAAAGAGTGTGTTCACTCCAGATTACATTAGCGCAGTCACTTATGAGCATTTGCTTGCTGGGTCAGCCACCACATCTTTTACCTTGTCCTCAGCTGTCTACTTGATTTCTGGACACCCGGAAGTCGAAAGCAAGTTGCTAGCCGAAATCGACGGATTTGGTCCACATGATCAGATCCCAACAGCTCATGATCTTCAGCACAAATTCCCTTATCTTGAACAGGTTATTAAAGAGGCAATGAGGTTTTACATAGTTTCTCCTTTAGTTGCAAGAGAAACGTCAAGAGAAGTAGAAGTAGGAGGTTATCTTCTACCAAAGGGGACTTGGGTCTGGTTAGCTCTCGGAGTTTTAGCAAAAGATCCAAAGAACTTCCCGGAGCCAGAGAAGTTCAAGCCAGAGAGGTTTGATCCGAACAGCAAAGAAGAAAAACAAAGGCATCCTTATGCTTTCATACCATTTGGAATTGGGCCCCGAGCATGCGTTGGTCAGAAGTTTTCTCTACAAGAACTGAAGCTCTCACTAATTCATTTATACCGGAAATATGTATTCAGGCACTCTCCAAACATGGAGACACCTCTGGAACTTGAGTATGGCATTGTTCTCAACTTCAAGAAGGGTGTCAAGCTTACAGTCATCAAGCGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

539

Amino Acids

60.61

Weight (kDa)

9.02

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 49 - 526 7.1e-86 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
AccI GTMKAC 3 cut(s) 262, 846, 1071
AciI CCGC 2 cut(s) 290, 1612
AclWI GGATC 3 cut(s) 1141, 1325, 1373
AcoI YGGCCR 2 cut(s) 570, 664
AcsI RAATTY 5 cut(s) 320, 819, 862, 928, 1175
AcuI CTGAAG 4 cut(s) 229, 752, 1151, 1502
AfiI CCNNNNNNNGG 3 cut(s) 128, 170, 362
AgsI TTSAA 9 cut(s) 325, 497, 552, 621, 645, 814, 1190, 1363, 1582
AjnI CCWGG 2 cut(s) 145, 398
Alw26I GTCTC 4 cut(s) 67, 392, 694, 1535
AlwI GGATC 3 cut(s) 1141, 1325, 1373
Ama87I CYCGRG 1 cut(s) 1443
AoxI GGCC 7 cut(s) 148, 235, 570, 613, 664, 769, 1439
ApaI GGGCCC 1 cut(s) 1443
ApeKI GCWGC 1 cut(s) 593
ApoI RAATTY 5 cut(s) 320, 819, 862, 928, 1175
Asp700I GAANNNNTTC 1 cut(s) 929
AspLEI GCGC 1 cut(s) 1007
AspS9I GGNCC 7 cut(s) 149, 200, 236, 769, 1133, 1439, 1440
AsuC2I CCSGG 3 cut(s) 825, 1091, 1346
AsuHPI GGTGA 2 cut(s) 368, 388
AsuII TTCGAA 1 cut(s) 923
AsuNHI GCTAGC 2 cut(s) 464, 1111
AvaI CYCGRG 1 cut(s) 1443
AvaII GGWCC 2 cut(s) 200, 1133
BaeGI GKGCMC 2 cut(s) 830, 1443
BalI TGGCCA 2 cut(s) 572, 666
BanII GRGCYC 1 cut(s) 1443
BbsI GAAGAC 1 cut(s) 543
BbvCI CCTCAGC 1 cut(s) 1063
BbvI GCAGC 1 cut(s) 580
BccI CCATC 6 cut(s) 19, 25, 358, 405, 730, 875
BciT130I CCWGG 2 cut(s) 147, 400
BclI TGATCA 1 cut(s) 1141
BcnI CCSGG 3 cut(s) 825, 1091, 1346
BcoDI GTCTC 4 cut(s) 67, 392, 694, 1535
BfaI CTAG 5 cut(s) 170, 461, 465, 870, 1112
BglI GCCNNNNNGGC 1 cut(s) 802
BisI GCNGC 1 cut(s) 594
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 595
Bme1390I CCNGG 5 cut(s) 147, 400, 825, 1091, 1346
Bme18I GGWCC 2 cut(s) 200, 1133
BmeT110I CYCGRG 1 cut(s) 1443
BmgT120I GGNCC 7 cut(s) 149, 200, 236, 769, 1133, 1439, 1440
BmiI GGNNCC 6 cut(s) 144, 367, 751, 1350, 1441, 1442
BmrFI CCNGG 5 cut(s) 147, 400, 825, 1091, 1346
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 2 cut(s) 277, 1417
BmtI GCTAGC 2 cut(s) 468, 1115
BmuI ACTGGG 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 1298
BpiI GAAGAC 1 cut(s) 543
BpmI CTGGAG 2 cut(s) 117, 975
Bpu10I CCTNAGC 1 cut(s) 1063
Bpu1102I GCTNAGC 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 923
BpuEI CTTGAG 1 cut(s) 1577
BpuMI CCSGG 3 cut(s) 825, 1091, 1346
Bsa29I ATCGAT 1 cut(s) 657
BsaI GGTCTC 2 cut(s) 67, 392
BsaJI CCNNGG 1 cut(s) 399
BsaWI WCCGGW 2 cut(s) 849, 1506
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 170, 362
Bse1I ACTGG 2 cut(s) 131, 842
Bse3DI GCAATG 1 cut(s) 1215
BseBI CCWGG 2 cut(s) 147, 400
BseCI ATCGAT 1 cut(s) 657
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 3 cut(s) 36, 330, 1408
BseLI CCNNNNNNNGG 3 cut(s) 128, 170, 362
BseMI GCAATG 1 cut(s) 1215
BseMII CTCAG 5 cut(s) 228, 375, 577, 740, 1077
BseNI ACTGG 2 cut(s) 131, 842
BseSI GKGCMC 2 cut(s) 830, 1443
BseXI GCAGC 1 cut(s) 580
BseYI CCCAGC 1 cut(s) 1031
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 7 cut(s) 150, 237, 572, 615, 666, 771, 1441
BshVI ATCGAT 1 cut(s) 657
BsiEI CGRYCG 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 1443
BsiSI CCGG 5 cut(s) 824, 850, 1091, 1346, 1507
BslFI GGGAC 3 cut(s) 416, 764, 1306
BslI CCNNNNNNNGG 3 cut(s) 128, 170, 362
BsmAI GTCTC 4 cut(s) 67, 392, 694, 1535
BsmFI GGGAC 3 cut(s) 416, 764, 1306
BsmI GAATGC 1 cut(s) 955
BsnI GGCC 7 cut(s) 150, 237, 572, 615, 666, 771, 1441
Bso31I GGTCTC 2 cut(s) 67, 392
BsoBI CYCGRG 1 cut(s) 1443
Bsp119I TTCGAA 1 cut(s) 923
Bsp120I GGGCCC 1 cut(s) 1439
Bsp1286I GDGCHC 2 cut(s) 830, 1443
Bsp143I GATC 6 cut(s) 654, 1141, 1146, 1162, 1330, 1378
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 2 cut(s) 290, 1612
BspANI GGCC 7 cut(s) 150, 237, 572, 615, 666, 771, 1441
BspCNI CTCAG 5 cut(s) 227, 374, 576, 739, 1076
BspDI ATCGAT 1 cut(s) 657
BspHI TCATGA 1 cut(s) 1159
BspLI GGNNCC 6 cut(s) 144, 367, 751, 1350, 1441, 1442
BspOI GCTAGC 2 cut(s) 468, 1115
BspPI GGATC 3 cut(s) 1141, 1325, 1373
BspT104I TTCGAA 1 cut(s) 923
BspTNI GGTCTC 2 cut(s) 67, 392
BsrDI GCAATG 1 cut(s) 1215
BsrI ACTGG 2 cut(s) 131, 842
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 6 cut(s) 654, 1141, 1146, 1162, 1330, 1378
Bst2UI CCWGG 2 cut(s) 147, 400
Bst4CI ACNGT 3 cut(s) 70, 79, 1603
Bst6I CTCTTC 4 cut(s) 378, 529, 809, 890
BstBI TTCGAA 1 cut(s) 923
BstC8I GCNNGC 7 cut(s) 84, 189, 466, 875, 1029, 1113, 1450
BstDEI CTNAG 6 cut(s) 192, 214, 361, 563, 726, 1063
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 3 cut(s) 36, 330, 1408
BstHHI GCGC 1 cut(s) 1007
BstKTI GATC 6 cut(s) 657, 1144, 1149, 1165, 1333, 1381
BstMAI GTCTC 4 cut(s) 67, 392, 694, 1535
BstMBI GATC 6 cut(s) 654, 1141, 1146, 1162, 1330, 1378
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 4 cut(s) 92, 193, 802, 1037
BstNI CCWGG 2 cut(s) 147, 400
BstNSI RCATGY 1 cut(s) 1452
BstPAI GACNNNNGTC 1 cut(s) 1298
BstSCI CCNGG 5 cut(s) 145, 398, 823, 1089, 1344
BstSLI GKGCMC 2 cut(s) 830, 1443
BstV1I GCAGC 1 cut(s) 580
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 2 cut(s) 1146, 1330
BstXI CCANNNNNNTGG 1 cut(s) 881
BstYI RGATCY 2 cut(s) 1146, 1330
Bsu15I ATCGAT 1 cut(s) 657
BsuRI GGCC 7 cut(s) 150, 237, 572, 615, 666, 771, 1441
BsuTUI ATCGAT 1 cut(s) 657
BtsCI GGATG 3 cut(s) 36, 330, 1408
BtsIMutI CAGTG 3 cut(s) 84, 447, 573
Cac8I GCNNGC 7 cut(s) 84, 189, 466, 875, 1029, 1113, 1450
CciI TCATGA 1 cut(s) 1159
CfoI GCGC 1 cut(s) 1007
Cfr13I GGNCC 7 cut(s) 149, 200, 236, 769, 1133, 1439, 1440
ClaI ATCGAT 1 cut(s) 657
CviAII CATG 7 cut(s) 197, 481, 1139, 1160, 1449, 1537, 1617
DdeI CTNAG 6 cut(s) 192, 214, 361, 563, 726, 1063
DpnI GATC 6 cut(s) 656, 1143, 1148, 1164, 1332, 1380
DpnII GATC 6 cut(s) 654, 1141, 1146, 1162, 1330, 1378
EaeI YGGCCR 2 cut(s) 570, 664
Eam1104I CTCTTC 4 cut(s) 378, 529, 809, 890
EarI CTCTTC 4 cut(s) 378, 529, 809, 890
Eco24I GRGCYC 1 cut(s) 1443
Eco31I GGTCTC 2 cut(s) 67, 392
Eco47I GGWCC 2 cut(s) 200, 1133
Eco57I CTGAAG 4 cut(s) 229, 752, 1151, 1502
Eco88I CYCGRG 1 cut(s) 1443
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 1440
EcoRI GAATTC 1 cut(s) 819
EcoRII CCWGG 2 cut(s) 145, 398
EcoT38I GRGCYC 1 cut(s) 1443
FaeI CATG 7 cut(s) 200, 484, 1142, 1163, 1452, 1540, 1620
FalI AAGNNNNNCTT 6 cut(s) 374, 406, 725, 757, 1396, 1428
FaqI GGGAC 3 cut(s) 416, 764, 1306
FatI CATG 7 cut(s) 196, 480, 1138, 1159, 1448, 1536, 1616
FauNDI CATATG 1 cut(s) 255
FbaI TGATCA 1 cut(s) 1141
FblI GTMKAC 3 cut(s) 262, 846, 1071
Fnu4HI GCNGC 1 cut(s) 594
FokI GGATG 3 cut(s) 43, 317, 1395
FriOI GRGCYC 1 cut(s) 1443
Fsp4HI GCNGC 1 cut(s) 594
FspBI CTAG 5 cut(s) 170, 461, 465, 870, 1112
GlaI GCGC 1 cut(s) 1006
GluI GCNGC 1 cut(s) 594
GsaI CCCAGC 1 cut(s) 1035
GsuI CTGGAG 2 cut(s) 117, 975
HaeIII GGCC 7 cut(s) 150, 237, 572, 615, 666, 771, 1441
HapII CCGG 5 cut(s) 824, 850, 1091, 1346, 1507
HhaI GCGC 1 cut(s) 1007
Hin1II CATG 7 cut(s) 200, 484, 1142, 1163, 1452, 1540, 1620
Hin6I GCGC 1 cut(s) 1005
HinP1I GCGC 1 cut(s) 1005
HincII GTYRAC 2 cut(s) 417, 607
HindII GTYRAC 2 cut(s) 417, 607
HindIII AAGCTT 1 cut(s) 1595
HinfI GANTC 5 cut(s) 312, 497, 521, 641, 959
HpaII CCGG 5 cut(s) 824, 850, 1091, 1346, 1507
HphI GGTGA 2 cut(s) 368, 388
Hpy166II GTNNAC 7 cut(s) 263, 417, 607, 847, 987, 1072, 1136
Hpy188I TCNGA 8 cut(s) 18, 566, 694, 964, 1146, 1316, 1383, 1461
Hpy8I GTNNAC 7 cut(s) 263, 417, 607, 847, 987, 1072, 1136
Hpy99I CGWCG 1 cut(s) 1127
HpyAV CCTTC 5 cut(s) 132, 188, 462, 959, 1579
HpyCH4III ACNGT 3 cut(s) 70, 79, 1603
HpyCH4IV ACGT 2 cut(s) 579, 1250
HpyCH4V TGCA 6 cut(s) 119, 484, 503, 790, 953, 1241
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 193, 802, 1037
HpyF3I CTNAG 6 cut(s) 192, 214, 361, 563, 726, 1063
HpySE526I ACGT 2 cut(s) 579, 1250
Hsp92II CATG 7 cut(s) 200, 484, 1142, 1163, 1452, 1540, 1620
HspAI GCGC 1 cut(s) 1005
Ksp22I TGATCA 1 cut(s) 1141
Kzo9I GATC 6 cut(s) 654, 1141, 1146, 1162, 1330, 1378
LmnI GCTCC 3 cut(s) 292, 371, 1348
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 2 cut(s) 277, 1417
MaeI CTAG 5 cut(s) 170, 461, 465, 870, 1112
MaeII ACGT 2 cut(s) 579, 1250
MaeIII GTNAC 1 cut(s) 1009
MalI GATC 6 cut(s) 656, 1143, 1148, 1164, 1332, 1380
MboI GATC 6 cut(s) 654, 1141, 1146, 1162, 1330, 1378
MflI RGATCY 2 cut(s) 1146, 1330
MhlI GDGCHC 2 cut(s) 830, 1443
MlsI TGGCCA 2 cut(s) 572, 666
MluNI TGGCCA 2 cut(s) 572, 666
MlyI GAGTC 2 cut(s) 515, 968
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 9 cut(s) 381, 566, 911, 1072, 1198, 1206, 1265, 1365, 1557
Mox20I TGGCCA 2 cut(s) 572, 666
MroXI GAANNNNTTC 1 cut(s) 929
MscI TGGCCA 2 cut(s) 572, 666
MseI TTAA 1 cut(s) 1200
MslI CAYNNNNRTG 1 cut(s) 1413
Msp20I TGGCCA 2 cut(s) 572, 666
MspA1I CMGCKG 2 cut(s) 730, 1067
MspI CCGG 5 cut(s) 824, 850, 1091, 1346, 1507
MspR9I CCNGG 5 cut(s) 147, 400, 825, 1091, 1346
Mva1269I GAATGC 1 cut(s) 955
MvaI CCWGG 2 cut(s) 147, 400
MwoI GCNNNNNNNGC 4 cut(s) 92, 193, 802, 1037
NciI CCSGG 3 cut(s) 825, 1091, 1346
NdeI CATATG 1 cut(s) 255
NdeII GATC 6 cut(s) 654, 1141, 1146, 1162, 1330, 1378
NheI GCTAGC 2 cut(s) 464, 1111
NlaIII CATG 7 cut(s) 200, 484, 1142, 1163, 1452, 1540, 1620
NlaIV GGNNCC 6 cut(s) 144, 367, 751, 1350, 1441, 1442
NmuCI GTSAC 1 cut(s) 1009
NspI RCATGY 1 cut(s) 1452
NspV TTCGAA 1 cut(s) 923
PaeI GCATGC 1 cut(s) 1452
PagI TCATGA 1 cut(s) 1159
PctI GAATGC 1 cut(s) 955
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 3 cut(s) 312, 497, 641
PfoI TCCNGGA 1 cut(s) 1344
PkrI GCNGC 1 cut(s) 595
PleI GAGTC 2 cut(s) 515, 967
PpsI GAGTC 2 cut(s) 515, 967
PshAI GACNNNNGTC 1 cut(s) 1298
PsiI TTATAA 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 145, 398
PspFI CCCAGC 1 cut(s) 1031
PspGI CCWGG 2 cut(s) 145, 398
PspN4I GGNNCC 6 cut(s) 144, 367, 751, 1350, 1441, 1442
PspOMI GGGCCC 1 cut(s) 1439
PspPI GGNCC 7 cut(s) 149, 200, 236, 769, 1133, 1439, 1440
PsuI RGATCY 2 cut(s) 1146, 1330
PvuII CAGCTG 2 cut(s) 730, 1067
RseI CAYNNNNRTG 1 cut(s) 1413
SaqAI TTAA 1 cut(s) 1200
SatI GCNGC 1 cut(s) 594
Sau3AI GATC 6 cut(s) 654, 1141, 1146, 1162, 1330, 1378
Sau96I GGNCC 7 cut(s) 149, 200, 236, 769, 1133, 1439, 1440
SchI GAGTC 2 cut(s) 515, 968
ScrFI CCNGG 5 cut(s) 147, 400, 825, 1091, 1346
SduI GDGCHC 2 cut(s) 830, 1443
SfaNI GCATC 2 cut(s) 277, 1417
SfuI TTCGAA 1 cut(s) 923
SinI GGWCC 2 cut(s) 200, 1133
SmiMI CAYNNNNRTG 1 cut(s) 1413
SmlI CTYRAG 1 cut(s) 1556
SmoI CTYRAG 1 cut(s) 1556
SphI GCATGC 1 cut(s) 1452
SsiI CCGC 2 cut(s) 290, 1612
SspI AATATT 1 cut(s) 90
SspMI CTAG 5 cut(s) 170, 461, 465, 870, 1112
StyD4I CCNGG 5 cut(s) 145, 398, 823, 1089, 1344
TaaI ACNGT 3 cut(s) 70, 79, 1603
TaiI ACGT 2 cut(s) 582, 1253
TaqI TCGA 5 cut(s) 65, 657, 923, 1098, 1122
TfiI GAWTC 3 cut(s) 312, 497, 641
Tru1I TTAA 1 cut(s) 1200
Tru9I TTAA 1 cut(s) 1200
TscAI CASTG 3 cut(s) 84, 447, 580
TseFI GTSAC 1 cut(s) 1009
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 8 cut(s) 242, 444, 699, 908, 917, 962, 1411, 1487
TspGWI ACGGA 2 cut(s) 742, 1140
TspRI CASTG 3 cut(s) 84, 447, 580
VpaK11BI GGWCC 2 cut(s) 200, 1133
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 5 cut(s) 320, 819, 862, 928, 1175
XceI RCATGY 1 cut(s) 1452
XcmI CCANNNNNNNNNTGG 2 cut(s) 55, 1293
XmiI GTMKAC 3 cut(s) 262, 846, 1071
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 5 cut(s) 170, 461, 465, 870, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.