Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

7271529 .. 7271990

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGTTTGATAACCAAAACATGGAAGCGGTGCAAATCAATAGGCCGGGGTCGTCCTACTAATTTGCATGGAATGGTGCCTGCTCTGACCACCAAGAGCAAGTCATGCCCACATATCAAACTCGGGATGCTTGAGGAAAAGCGTGCGAGCAAGCGCCAAGTGGCTCCTGAAGGTTGCTTTACAGTCTATGTCGGACCCCAAAAGCAAAGGTTCGTGGTCAAAACGGAACACGCAAACCATCCTCTCTTCAAGATGCTGCTTGAAGAAGCCGAGTCTGAATTTGGGTATGACAGTCGAGGTCCTCTTGTGCTTCCTTGTAACGTTGAGATATTCTACAAGGTTTTGGTGGAAATGGATGATTGTGGCGAACAAAAGGTTCCTCGAGGGTGGGGCTTGGCTAAGCGTTATGGTTCTTACAGTGTTCTTAGCCCGTCTCGGATGGTTGCTATCAATCAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

154

Amino Acids

17.27

Weight (kDa)

9.56

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	38 - 115	4.7e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	76
AccB7I	CCANNNNNTGG	1 cut(s)	21
AciI	CCGC	1 cut(s)	28
AclI	AACGTT	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	250, 263
Alw26I	GTCTC	1 cut(s)	438
Ama87I	CYCGRG	2 cut(s)	122, 381
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	194, 299
AsuC2I	CCSGG	1 cut(s)	47
AvaI	CYCGRG	2 cut(s)	122, 381
AvaII	GGWCC	2 cut(s)	194, 299
BanI	GGYRCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	2 cut(s)	246, 433
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	1 cut(s)	460
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	1 cut(s)	257
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	2 cut(s)	194, 299
BmeT110I	CYCGRG	2 cut(s)	122, 381
BmgT120I	GGNCC	2 cut(s)	194, 299
BmiI	GGNNCC	4 cut(s)	78, 165, 196, 378
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	117, 243
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	4 cut(s)	132, 238, 361, 444
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	76
BsiHKCI	CYCGRG	2 cut(s)	122, 381
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	438
BsmBI	CGTCTC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	2 cut(s)	122, 381
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	78, 165, 196, 378
BspT107I	GGYRCC	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	46
Bst4CI	ACNGT	3 cut(s)	184, 293, 419
Bst6I	CTCTTC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	81, 144, 148, 152
BstDEI	CTNAG	2 cut(s)	399, 425
BstF5I	GGATG	4 cut(s)	132, 238, 361, 444
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	132, 238, 361, 444
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	4 cut(s)	81, 144, 148, 152
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	194, 299
CviAII	CATG	3 cut(s)	21, 68, 105
CviJI	RGCY	6 cut(s)	45, 164, 269, 393, 398, 429
CviKI_1	RGCY	6 cut(s)	45, 164, 269, 393, 398, 429
DdeI	CTNAG	2 cut(s)	399, 425
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco47I	GGWCC	2 cut(s)	194, 299
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	2 cut(s)	122, 381
EcoO109I	RGGNCCY	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	438
FaeI	CATG	3 cut(s)	24, 71, 108
FaiI	YATR	7 cut(s)	22, 69, 106, 114, 189, 288, 408
FatI	CATG	3 cut(s)	20, 67, 104
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	4 cut(s)	139, 225, 368, 451
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	1 cut(s)	460
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	257
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	46
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	24, 71, 108
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	87, 194, 277, 438
Hpy188III	TCNNGA	3 cut(s)	124, 167, 250
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	3 cut(s)	184, 293, 419
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	33, 67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	399, 425
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	24, 71, 108
HspAI	GCGC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	59, 93, 180
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	2 cut(s)	117, 243
MaeI	CTAG	1 cut(s)	460
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	317
MboII	GAAGA	2 cut(s)	238, 275
MluCI	AATT	2 cut(s)	61, 278
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	127, 252, 290, 312, 377, 390
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	47
NlaIII	CATG	3 cut(s)	24, 71, 108
NlaIV	GGNNCC	4 cut(s)	78, 165, 196, 378
NmeAIII	GCCGAG	1 cut(s)	295
PaeR7I	CTCGAG	1 cut(s)	381
PflMI	CCANNNNNTGG	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	299
PspN4I	GGNNCC	4 cut(s)	78, 165, 196, 378
PspPI	GGNCC	2 cut(s)	194, 299
PspPPI	RGGWCCY	1 cut(s)	299
PspXI	VCTCGAGB	1 cut(s)	381
SatI	GCNGC	1 cut(s)	257
Sau96I	GGNCC	2 cut(s)	194, 299
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	6 cut(s)	175, 212, 301, 324, 342, 378
SfaNI	GCATC	2 cut(s)	117, 243
Sfr274I	CTCGAG	1 cut(s)	381
SinI	GGWCC	2 cut(s)	194, 299
SlaI	CTCGAG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	131, 381
SmoI	CTYRAG	2 cut(s)	131, 381
Sse9I	AATT	2 cut(s)	61, 278
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	184, 293, 419
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	295, 382
TasI	AATT	2 cut(s)	61, 278
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	194, 299
XapI	RAATTY	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.