Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

60707291 .. 60708046

Gene Structure 756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGAAGGCAGAGTCGACAAAGAATCTGATTATCAGGGCGTGGAGGCTATGCACTACTTCACATAAACAAACCAGCAGCAAAGGGTGCACAGCATCCAGTTCAAGGAGTTGCAGTACAAGCAATGGCAAGCGGAAGAAGAACAAGGCCGACGAAGTAACTCCTGTCGGGTGTTTCCCAGTCTACATCGGACCCGAAAAACAACGGTTTGTGGTGAAGGTGGAGTTTGCTAATCATCCGTTGTTCAAGGTGCTGTTAGAGGATGCAGCATTGGAGTATGGGTACAAAAATGATGGTCCACTGTTGCTTCCTTGTGATGTGGATTTGTTCTACAATGTTTTGGCAGAGATGGAGAGCATGGATAACATCAATGAGGAAATCAGAAGTTCCAACCGGTCTTTGATACAAATTTTCTTCAGTCCAACTCGCTGTCATCATTCAAATTCAAGAATGAACAAGTGTTTTGGTGGTGCTATAGGCTGCTTGATTTTGTTGAGTTTGGTTCTAGCTCAAGTATTGATGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

176

Amino Acids

19.51

Weight (kDa)

8.93

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	28 - 115	3.2e-22	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	17, 183
AciI	CCGC	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	408, 442
AcuI	CTGAAG	1 cut(s)	400
AfaI	GTAC	2 cut(s)	118, 284
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgeI	ACCGGT	1 cut(s)	393
AgsI	TTSAA	4 cut(s)	105, 247, 441, 447
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw21I	GWGCWC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	88
AoxI	GGCC	1 cut(s)	147
ApaLI	GTGCAC	1 cut(s)	88
ApeKI	GCWGC	3 cut(s)	78, 266, 480
ApoI	RAATTY	2 cut(s)	408, 442
AsiGI	ACCGGT	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	191, 296
AsuHPI	GGTGA	2 cut(s)	16, 226
AvaII	GGWCC	2 cut(s)	191, 296
BaeGI	GKGCMC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	90, 278, 467
BccI	CCATC	2 cut(s)	287, 343
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	3 cut(s)	79, 267, 481
BlsI	GCNGC	3 cut(s)	80, 268, 482
Bme18I	GGWCC	2 cut(s)	191, 296
BmgT120I	GGNCC	2 cut(s)	191, 296
BmiI	GGNNCC	1 cut(s)	193
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	104, 253
BmuI	ACTGGG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	4 cut(s)	100, 130, 266, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	2 cut(s)	99, 179
Bse3DI	GCAATG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	95, 235, 268
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	99, 179
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	90, 278, 467
BshFI	GGCC	1 cut(s)	149
BshTI	ACCGGT	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	105
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	92
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	99, 179
BssAI	RCCGGY	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	207, 303
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	131
BstF5I	GGATG	3 cut(s)	95, 235, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 120
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	90, 278, 467
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	95, 235, 268
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	191, 296
Csp6I	GTAC	2 cut(s)	117, 283
CspAI	ACCGGT	1 cut(s)	393
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	4 cut(s)	49, 149, 480, 509
CviKI_1	RGCY	4 cut(s)	49, 149, 480, 509
CviQI	GTAC	2 cut(s)	117, 283
Eco47I	GGWCC	2 cut(s)	191, 296
Eco57I	CTGAAG	1 cut(s)	400
FaeI	CATG	1 cut(s)	361
FaiI	YATR	5 cut(s)	52, 66, 279, 359, 476
FatI	CATG	1 cut(s)	357
FblI	GTMKAC	2 cut(s)	17, 183
Fnu4HI	GCNGC	3 cut(s)	79, 267, 481
FokI	GGATG	3 cut(s)	82, 222, 275
Fsp4HI	GCNGC	3 cut(s)	79, 267, 481
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	3 cut(s)	79, 267, 481
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	14, 25
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	2 cut(s)	16, 226
Hpy166II	GTNNAC	4 cut(s)	18, 90, 184, 299
Hpy188I	TCNGA	3 cut(s)	30, 191, 383
Hpy188III	TCNNGA	1 cut(s)	447
Hpy8I	GTNNAC	4 cut(s)	18, 90, 184, 299
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	207, 303
HpyCH4V	TGCA	4 cut(s)	54, 90, 114, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 120
Hsp92II	CATG	1 cut(s)	361
LpnPI	CCDG	6 cut(s)	22, 88, 112, 177, 192, 407
Lsp1109I	GCAGC	3 cut(s)	90, 278, 467
LweI	GCATC	2 cut(s)	104, 253
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	148, 151, 406
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	2 cut(s)	408, 442
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	414, 446
MnlI	CCTC	3 cut(s)	39, 253, 367
MseI	TTAA	1 cut(s)	526
MspI	CCGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	87, 120
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	25
PinAI	ACCGGT	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	80, 268, 482
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	191, 296
RsaI	GTAC	2 cut(s)	118, 284
RsaNI	GTAC	2 cut(s)	117, 283
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	526
SatI	GCNGC	3 cut(s)	79, 267, 481
Sau96I	GGNCC	2 cut(s)	191, 296
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	3 cut(s)	222, 252, 511
SfaNI	GCATC	2 cut(s)	104, 253
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	191, 296
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
Sse9I	AATT	2 cut(s)	408, 442
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	1 cut(s)	506
TaaI	ACNGT	2 cut(s)	207, 303
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	408, 442
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	526
Tru9I	TTAA	1 cut(s)	526
TscAI	CASTG	1 cut(s)	306
TseI	GCWGC	3 cut(s)	78, 266, 480
TspDTI	ATGAA	1 cut(s)	467
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	306
VneI	GTGCAC	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	191, 296
XapI	RAATTY	2 cut(s)	408, 442
XmiI	GTMKAC	2 cut(s)	17, 183
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.