Rh7CG107800

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000824
Physical Location & Seq
Forward (+)
8282568 .. 8283209
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG107800.1

Sequence Viewer

Length: 510 bp
ATGGTGAAGGCAGAGTCGACAAAGAATCTGATTATCAAGGCGTGGAGGCTATGCACTACTTTACATAAACAAACCAGCAGCAAAGGGTGCACAGCACCCAGTTCAAGGAGTTGCAGTACTAGCAATGGCAAGCGGAAGAAGAACAAGGCAGACGAAGTAACTCCTGTCGGGTGTTTCTCAGTCTACGTCGGACCCGAAAAACAACGGTTTGTGGTGAAGGTGGAGTTTGCTAATCATCCGTTGTTCAAGGTGCTGTTAGAGGATGCAGCATTGGAGTATGGGTACAAAAATGATGGTCCACTGTTGCTTCCTTGTGATGTGGATTTGTTCTACAATGTTTTGGCAGAGATGGAGAGCATGGATAACATCAATGAGGAAATCATAAGTTCCAACCGGTCTTTGATACAAATTTTCTTCAGTCCAAATCGCAGTCATCATTCAAATTCCAGAATGAACAAGGGTTTTGGTGGTGGCTATAGGCTGCTTAGTACATCACCAATGCTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

169

Amino Acids

18.87

Weight (kDa)

9.11

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 34 - 115 3.2e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 17, 183
AciI CCGC 1 cut(s) 133
AcsI RAATTY 2 cut(s) 408, 442
AcuI CTGAAG 1 cut(s) 400
AfaI GTAC 3 cut(s) 118, 284, 490
AfiI CCNNNNNNNGG 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 105, 247, 441
Alw21I GWGCWC 1 cut(s) 92
Alw44I GTGCAC 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 78, 266, 481
ApoI RAATTY 2 cut(s) 408, 442
AsiGI ACCGGT 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 191, 296
AsuHPI GGTGA 3 cut(s) 16, 226, 486
AvaII GGWCC 2 cut(s) 191, 296
BaeGI GKGCMC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 3 cut(s) 90, 278, 468
BccI CCATC 2 cut(s) 287, 343
BfaI CTAG 2 cut(s) 120, 503
BfmI CTRYAG 1 cut(s) 475
BisI GCNGC 3 cut(s) 79, 267, 482
BlsI GCNGC 3 cut(s) 80, 268, 483
BmcAI AGTACT 1 cut(s) 118
Bme18I GGWCC 2 cut(s) 191, 296
BmgT120I GGNCC 2 cut(s) 191, 296
BmiI GGNNCC 1 cut(s) 193
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 393
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 266, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 130
BseGI GGATG 2 cut(s) 235, 268
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 3 cut(s) 90, 278, 468
BshTI ACCGGT 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 92
BspACI CCGC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 207, 303
BstAPI GCANNNNNTGC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 178, 485
BstF5I GGATG 2 cut(s) 235, 268
BstMWI GCNNNNNNNGC 2 cut(s) 87, 120
BstSFI CTRYAG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 90, 278, 468
BtsCI GGATG 2 cut(s) 235, 268
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 191, 296
Csp6I GTAC 3 cut(s) 117, 283, 489
CspAI ACCGGT 1 cut(s) 393
CviAII CATG 1 cut(s) 358
CviJI RGCY 3 cut(s) 49, 474, 481
CviKI_1 RGCY 3 cut(s) 49, 474, 481
CviQI GTAC 3 cut(s) 117, 283, 489
DdeI CTNAG 2 cut(s) 178, 485
Eco47I GGWCC 2 cut(s) 191, 296
Eco57I CTGAAG 1 cut(s) 400
FaeI CATG 1 cut(s) 361
FaiI YATR 6 cut(s) 52, 66, 279, 359, 383, 477
FatI CATG 1 cut(s) 357
FblI GTMKAC 2 cut(s) 17, 183
Fnu4HI GCNGC 3 cut(s) 79, 267, 482
FokI GGATG 2 cut(s) 222, 275
Fsp4HI GCNGC 3 cut(s) 79, 267, 482
FspBI CTAG 2 cut(s) 120, 503
GluI GCNGC 3 cut(s) 79, 267, 482
HapII CCGG 1 cut(s) 394
Hin1II CATG 1 cut(s) 361
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 2 cut(s) 14, 25
HpaII CCGG 1 cut(s) 394
HphI GGTGA 3 cut(s) 16, 226, 486
Hpy166II GTNNAC 4 cut(s) 18, 90, 184, 299
Hpy188I TCNGA 2 cut(s) 30, 191
Hpy188III TCNNGA 1 cut(s) 447
Hpy8I GTNNAC 4 cut(s) 18, 90, 184, 299
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 207, 303
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 54, 90, 114, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 120
HpyF3I CTNAG 2 cut(s) 178, 485
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 361
LpnPI CCDG 5 cut(s) 88, 112, 177, 407, 460
Lsp1109I GCAGC 3 cut(s) 90, 278, 468
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 120, 503
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 157
MboII GAAGA 3 cut(s) 148, 151, 406
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 2 cut(s) 408, 442
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 2 cut(s) 169, 414
MnlI CCTC 3 cut(s) 39, 253, 367
MseI TTAA 1 cut(s) 508
MspI CCGG 1 cut(s) 394
MwoI GCNNNNNNNGC 2 cut(s) 87, 120
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 1 cut(s) 25
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 3 cut(s) 80, 268, 483
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 191, 296
RsaI GTAC 3 cut(s) 118, 284, 490
RsaNI GTAC 3 cut(s) 117, 283, 489
SalI GTCGAC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 508
SatI GCNGC 3 cut(s) 79, 267, 482
Sau96I GGNCC 2 cut(s) 191, 296
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 92
SetI ASST 3 cut(s) 189, 222, 252
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 475
SinI GGWCC 2 cut(s) 191, 296
Sse9I AATT 2 cut(s) 408, 442
SsiI CCGC 1 cut(s) 133
SspMI CTAG 2 cut(s) 120, 503
TaaI ACNGT 2 cut(s) 207, 303
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 17
TasI AATT 2 cut(s) 408, 442
TatI WGTACW 2 cut(s) 116, 488
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 508
Tru9I TTAA 1 cut(s) 508
TscAI CASTG 1 cut(s) 306
TseI GCWGC 3 cut(s) 78, 266, 481
TspDTI ATGAA 1 cut(s) 467
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 306
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 191, 296
XapI RAATTY 2 cut(s) 408, 442
XmiI GTMKAC 2 cut(s) 17, 183
XspI CTAG 2 cut(s) 120, 503
ZrmI AGTACT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.