Amidohydrolase family
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g23250 FvH4_4g23250 FvH4_4g23250 FvH4_4g23250 |
| malus_domestica | MD10G1063400.v1.1 MD13G1123400.v1.1 MD16G1124200.v1.1 |
| prunus_persica | Prupe.1G221400_v2.0.a1 Prupe.4G226800_v2.0.a1 |
| pyrus_communis | pycom16g10610 |
| rosa_chinensis | RchiOBHm_Chr4g0429611 |
| rosa_laevigata | RLG00000007058 |
| rosa_multiflora | Rmu_sc0006590.1_g000013 Rmu_sc0013109.1_g000001 Rmu_sc0017032.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00371300 |
| rosa_rugosa | Rorug04G0237300 |
| rosa_samantha | Rh4BG298900 Rh4CG314500 |
| rosa_wichuraiana | Rw4G025380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 80 |
| AccB1I | GGYRCC | 1 cut(s) | 970 |
| AccBSI | CCGCTC | 1 cut(s) | 1073 |
| AciI | CCGC | 7 cut(s) | 88, 507, 666, 809, 861, 885, 1071 |
| AclWI | GGATC | 3 cut(s) | 1058, 1143, 1156 |
| AcoI | YGGCCR | 2 cut(s) | 196, 308 |
| AcsI | RAATTY | 1 cut(s) | 1408 |
| AcuI | CTGAAG | 2 cut(s) | 423, 776 |
| AcvI | CACGTG | 1 cut(s) | 232 |
| AcyI | GRCGYC | 3 cut(s) | 75, 489, 971 |
| AfaI | GTAC | 4 cut(s) | 314, 1010, 1128, 1244 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 513, 580 |
| AflII | CTTAAG | 1 cut(s) | 457 |
| AgsI | TTSAA | 2 cut(s) | 855, 1344 |
| AjnI | CCWGG | 2 cut(s) | 211, 1011 |
| AleI | CACNNNNGTG | 2 cut(s) | 230, 384 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1026, 1058 |
| AluBI | AGCT | 4 cut(s) | 250, 373, 559, 1099 |
| AluI | AGCT | 4 cut(s) | 250, 373, 559, 1099 |
| Alw21I | GWGCWC | 3 cut(s) | 237, 375, 530 |
| Alw26I | GTCTC | 4 cut(s) | 108, 552, 731, 955 |
| Alw44I | GTGCAC | 1 cut(s) | 233 |
| AlwI | GGATC | 3 cut(s) | 1058, 1143, 1156 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 250 |
| Ama87I | CYCGRG | 1 cut(s) | 78 |
| AoxI | GGCC | 3 cut(s) | 196, 308, 516 |
| ApaLI | GTGCAC | 1 cut(s) | 233 |
| ApeKI | GCWGC | 4 cut(s) | 10, 247, 887, 890 |
| ApoI | RAATTY | 1 cut(s) | 1408 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1089, 1335 |
| AspLEI | GCGC | 3 cut(s) | 10, 594, 973 |
| AspS9I | GGNCC | 3 cut(s) | 67, 516, 1203 |
| AsuHPI | GGTGA | 5 cut(s) | 52, 146, 506, 1114, 1298 |
| AsuNHI | GCTAGC | 1 cut(s) | 805 |
| AvaI | CYCGRG | 1 cut(s) | 78 |
| AvaII | GGWCC | 2 cut(s) | 67, 1203 |
| BaeGI | GKGCMC | 1 cut(s) | 237 |
| BamHI | GGATCC | 1 cut(s) | 1148 |
| BanI | GGYRCC | 1 cut(s) | 970 |
| BanII | GRGCYC | 1 cut(s) | 375 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 24, 56 |
| BauI | CACGAG | 1 cut(s) | 1238 |
| BbrPI | CACGTG | 1 cut(s) | 232 |
| BbsI | GAAGAC | 1 cut(s) | 76 |
| Bbv12I | GWGCWC | 3 cut(s) | 237, 375, 530 |
| BbvI | GCAGC | 4 cut(s) | 22, 259, 874, 877 |
| BccI | CCATC | 7 cut(s) | 62, 183, 306, 488, 581, 632, 959 |
| BceAI | ACGGC | 4 cut(s) | 113, 211, 295, 514 |
| BciT130I | CCWGG | 2 cut(s) | 213, 1013 |
| BciVI | GTATCC | 1 cut(s) | 551 |
| BclI | TGATCA | 1 cut(s) | 219 |
| BcoDI | GTCTC | 4 cut(s) | 108, 552, 731, 955 |
| BfaI | CTAG | 1 cut(s) | 806 |
| BfoI | RGCGCY | 1 cut(s) | 974 |
| BfrI | CTTAAG | 1 cut(s) | 457 |
| BfuI | GTATCC | 1 cut(s) | 551 |
| BisI | GCNGC | 5 cut(s) | 11, 248, 810, 888, 891 |
| BlsI | GCNGC | 5 cut(s) | 12, 249, 811, 889, 892 |
| BmcAI | AGTACT | 1 cut(s) | 1128 |
| Bme1390I | CCNGG | 2 cut(s) | 213, 1013 |
| Bme18I | GGWCC | 2 cut(s) | 67, 1203 |
| BmeT110I | CYCGRG | 1 cut(s) | 78 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 516, 1203 |
| BmiI | GGNNCC | 4 cut(s) | 69, 972, 1150, 1212 |
| BmrFI | CCNGG | 2 cut(s) | 213, 1013 |
| BmrI | ACTGGG | 1 cut(s) | 461 |
| BmsI | GCATC | 5 cut(s) | 603, 918, 925, 951, 1395 |
| BmtI | GCTAGC | 1 cut(s) | 809 |
| BmuI | ACTGGG | 1 cut(s) | 461 |
| BpiI | GAAGAC | 1 cut(s) | 76 |
| BpuEI | CTTGAG | 2 cut(s) | 1079, 1175 |
| BsaAI | YACGTR | 1 cut(s) | 232 |
| BsaHI | GRCGYC | 3 cut(s) | 75, 489, 971 |
| BsaJI | CCNNGG | 4 cut(s) | 63, 211, 754, 1206 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 513, 580 |
| Bse118I | RCCGGY | 2 cut(s) | 491, 518 |
| Bse1I | ACTGG | 4 cut(s) | 157, 456, 544, 688 |
| Bse3DI | GCAATG | 1 cut(s) | 900 |
| BseBI | CCWGG | 2 cut(s) | 213, 1013 |
| BseDI | CCNNGG | 4 cut(s) | 63, 211, 754, 1206 |
| BseGI | GGATG | 2 cut(s) | 1141, 1330 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 513, 580 |
| BseMI | GCAATG | 1 cut(s) | 900 |
| BseMII | CTCAG | 2 cut(s) | 257, 828 |
| BseNI | ACTGG | 4 cut(s) | 157, 456, 544, 688 |
| BseSI | GKGCMC | 1 cut(s) | 237 |
| BseXI | GCAGC | 4 cut(s) | 22, 259, 874, 877 |
| BseYI | CCCAGC | 1 cut(s) | 250 |
| Bsh1285I | CGRYCG | 1 cut(s) | 523 |
| BshFI | GGCC | 3 cut(s) | 198, 310, 518 |
| BshNI | GGYRCC | 1 cut(s) | 970 |
| BsiEI | CGRYCG | 1 cut(s) | 523 |
| BsiHKAI | GWGCWC | 3 cut(s) | 237, 375, 530 |
| BsiHKCI | CYCGRG | 1 cut(s) | 78 |
| BsiSI | CCGG | 2 cut(s) | 492, 519 |
| BsiWI | CGTACG | 1 cut(s) | 312 |
| BslFI | GGGAC | 1 cut(s) | 1069 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 513, 580 |
| BsmAI | GTCTC | 4 cut(s) | 108, 552, 731, 955 |
| BsmBI | CGTCTC | 2 cut(s) | 108, 731 |
| BsmFI | GGGAC | 1 cut(s) | 1069 |
| BsmI | GAATGC | 3 cut(s) | 634, 687, 906 |
| BsnI | GGCC | 3 cut(s) | 198, 310, 518 |
| BsoBI | CYCGRG | 1 cut(s) | 78 |
| Bsp1286I | GDGCHC | 3 cut(s) | 237, 375, 530 |
| Bsp143I | GATC | 4 cut(s) | 187, 219, 1063, 1148 |
| Bsp19I | CCATGG | 3 cut(s) | 63, 754, 1206 |
| BspACI | CCGC | 7 cut(s) | 88, 507, 666, 809, 861, 885, 1071 |
| BspANI | GGCC | 3 cut(s) | 198, 310, 518 |
| BspCNI | CTCAG | 2 cut(s) | 256, 829 |
| BspLI | GGNNCC | 4 cut(s) | 69, 972, 1150, 1212 |
| BspOI | GCTAGC | 1 cut(s) | 809 |
| BspPI | GGATC | 3 cut(s) | 1058, 1143, 1156 |
| BspQI | GCTCTTC | 1 cut(s) | 1080 |
| BspT107I | GGYRCC | 1 cut(s) | 970 |
| BspTI | CTTAAG | 1 cut(s) | 457 |
| BsrBI | CCGCTC | 1 cut(s) | 1073 |
| BsrDI | GCAATG | 1 cut(s) | 900 |
| BsrFI | RCCGGY | 2 cut(s) | 491, 518 |
| BsrI | ACTGG | 4 cut(s) | 157, 456, 544, 688 |
| BssAI | RCCGGY | 2 cut(s) | 491, 518 |
| BssECI | CCNNGG | 4 cut(s) | 63, 211, 754, 1206 |
| BssMI | GATC | 4 cut(s) | 187, 219, 1063, 1148 |
| BssNI | GRCGYC | 3 cut(s) | 75, 489, 971 |
| BssSI | CACGAG | 1 cut(s) | 1238 |
| BssT1I | CCWWGG | 3 cut(s) | 63, 754, 1206 |
| Bst2BI | CACGAG | 1 cut(s) | 1238 |
| Bst2UI | CCWGG | 2 cut(s) | 213, 1013 |
| Bst4CI | ACNGT | 7 cut(s) | 95, 763, 786, 820, 1090, 1247, 1286 |
| Bst6I | CTCTTC | 3 cut(s) | 169, 250, 1080 |
| BstACI | GRCGYC | 3 cut(s) | 75, 489, 971 |
| BstAFI | CTTAAG | 1 cut(s) | 457 |
| BstBAI | YACGTR | 1 cut(s) | 232 |
| BstC8I | GCNNGC | 7 cut(s) | 503, 507, 651, 807, 940, 1356, 1384 |
| BstDEI | CTNAG | 2 cut(s) | 243, 837 |
| BstDSI | CCRYGG | 3 cut(s) | 63, 754, 1206 |
| BstF5I | GGATG | 2 cut(s) | 1141, 1330 |
| BstH2I | RGCGCY | 1 cut(s) | 974 |
| BstHHI | GCGC | 3 cut(s) | 10, 594, 973 |
| BstKTI | GATC | 4 cut(s) | 190, 222, 1066, 1151 |
| BstMAI | GTCTC | 4 cut(s) | 108, 552, 731, 955 |
| BstMBI | GATC | 4 cut(s) | 187, 219, 1063, 1148 |
| BstMCI | CGRYCG | 1 cut(s) | 523 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 125, 470, 515, 710, 1079, 1233, 1355 |
| BstNI | CCWGG | 2 cut(s) | 213, 1013 |
| BstNSI | RCATGY | 5 cut(s) | 422, 468, 697, 701, 1358 |
| BstSCI | CCNGG | 2 cut(s) | 211, 1011 |
| BstSLI | GKGCMC | 1 cut(s) | 237 |
| BstV1I | GCAGC | 4 cut(s) | 22, 259, 874, 877 |
| BstV2I | GAAGAC | 1 cut(s) | 76 |
| BstX2I | RGATCY | 1 cut(s) | 1148 |
| BstYI | RGATCY | 1 cut(s) | 1148 |
| BsuI | GTATCC | 1 cut(s) | 551 |
| BsuRI | GGCC | 3 cut(s) | 198, 310, 518 |
| BtgI | CCRYGG | 3 cut(s) | 63, 754, 1206 |
| BtsCI | GGATG | 2 cut(s) | 1141, 1330 |
| BtsI | GCAGTG | 2 cut(s) | 447, 877 |
| BtsIMutI | CAGTG | 2 cut(s) | 447, 877 |
| Cac8I | GCNNGC | 7 cut(s) | 503, 507, 651, 807, 940, 1356, 1384 |
| CaiI | CAGNNNCTG | 1 cut(s) | 250 |
| CfoI | GCGC | 3 cut(s) | 10, 594, 973 |
| Cfr10I | RCCGGY | 2 cut(s) | 491, 518 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 516, 1203 |
| CseI | GACGC | 4 cut(s) | 83, 125, 411, 497 |
| Csp6I | GTAC | 4 cut(s) | 313, 1009, 1127, 1243 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 423, 458 |
| CviQI | GTAC | 4 cut(s) | 313, 1009, 1127, 1243 |
| DdeI | CTNAG | 2 cut(s) | 243, 837 |
| DinI | GGCGCC | 1 cut(s) | 972 |
| DpnI | GATC | 4 cut(s) | 189, 221, 1065, 1150 |
| DpnII | GATC | 4 cut(s) | 187, 219, 1063, 1148 |
| DraI | TTTAAA | 1 cut(s) | 1374 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 80 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 80 |
| EaeI | YGGCCR | 2 cut(s) | 196, 308 |
| Eam1104I | CTCTTC | 3 cut(s) | 169, 250, 1080 |
| EarI | CTCTTC | 3 cut(s) | 169, 250, 1080 |
| Ecl136II | GAGCTC | 1 cut(s) | 373 |
| Eco130I | CCWWGG | 3 cut(s) | 63, 754, 1206 |
| Eco24I | GRGCYC | 1 cut(s) | 375 |
| Eco47I | GGWCC | 2 cut(s) | 67, 1203 |
| Eco53kI | GAGCTC | 1 cut(s) | 373 |
| Eco57I | CTGAAG | 2 cut(s) | 423, 776 |
| Eco72I | CACGTG | 1 cut(s) | 232 |
| Eco88I | CYCGRG | 1 cut(s) | 78 |
| EcoICRI | GAGCTC | 1 cut(s) | 373 |
| EcoRII | CCWGG | 2 cut(s) | 211, 1011 |
| EcoT14I | CCWWGG | 3 cut(s) | 63, 754, 1206 |
| EcoT22I | ATGCAT | 1 cut(s) | 699 |
| EcoT38I | GRGCYC | 1 cut(s) | 375 |
| EgeI | GGCGCC | 1 cut(s) | 972 |
| EheI | GGCGCC | 1 cut(s) | 972 |
| ErhI | CCWWGG | 3 cut(s) | 63, 754, 1206 |
| Esp3I | CGTCTC | 2 cut(s) | 108, 731 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1160, 1192, 1323, 1355 |
| FaqI | GGGAC | 1 cut(s) | 1069 |
| FauI | CCCGC | 3 cut(s) | 514, 854, 892 |
| FauNDI | CATATG | 1 cut(s) | 715 |
| FbaI | TGATCA | 1 cut(s) | 219 |
| Fnu4HI | GCNGC | 5 cut(s) | 11, 248, 810, 888, 891 |
| FokI | GGATG | 2 cut(s) | 1148, 1337 |
| FriOI | GRGCYC | 1 cut(s) | 375 |
| Fsp4HI | GCNGC | 5 cut(s) | 11, 248, 810, 888, 891 |
| FspBI | CTAG | 1 cut(s) | 806 |
| GlaI | GCGC | 3 cut(s) | 9, 593, 972 |
| GluI | GCNGC | 5 cut(s) | 11, 248, 810, 888, 891 |
| GsaI | CCCAGC | 1 cut(s) | 254 |
| HaeII | RGCGCY | 1 cut(s) | 974 |
| HaeIII | GGCC | 3 cut(s) | 198, 310, 518 |
| HapII | CCGG | 2 cut(s) | 492, 519 |
| HgaI | GACGC | 4 cut(s) | 83, 125, 411, 497 |
| HhaI | GCGC | 3 cut(s) | 10, 594, 973 |
| Hin1I | GRCGYC | 3 cut(s) | 75, 489, 971 |
| Hin6I | GCGC | 3 cut(s) | 8, 592, 971 |
| HinP1I | GCGC | 3 cut(s) | 8, 592, 971 |
| HincII | GTYRAC | 2 cut(s) | 751, 829 |
| HindII | GTYRAC | 2 cut(s) | 751, 829 |
| HinfI | GANTC | 6 cut(s) | 81, 317, 338, 476, 721, 1312 |
| HpaI | GTTAAC | 1 cut(s) | 829 |
| HpaII | CCGG | 2 cut(s) | 492, 519 |
| HphI | GGTGA | 5 cut(s) | 52, 146, 506, 1114, 1298 |
| Hpy166II | GTNNAC | 4 cut(s) | 235, 751, 829, 1243 |
| Hpy188I | TCNGA | 7 cut(s) | 145, 180, 303, 525, 599, 1023, 1317 |
| Hpy188III | TCNNGA | 2 cut(s) | 426, 794 |
| Hpy8I | GTNNAC | 4 cut(s) | 235, 751, 829, 1243 |
| Hpy99I | CGWCG | 2 cut(s) | 77, 134 |
| HpyAV | CCTTC | 2 cut(s) | 1203, 1294 |
| HpyCH4III | ACNGT | 7 cut(s) | 95, 763, 786, 820, 1090, 1247, 1286 |
| HpyCH4IV | ACGT | 1 cut(s) | 231 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 125, 470, 515, 710, 1079, 1233, 1355 |
| HpyF3I | CTNAG | 2 cut(s) | 243, 837 |
| HpySE526I | ACGT | 1 cut(s) | 231 |
| Hsp92I | GRCGYC | 3 cut(s) | 75, 489, 971 |
| HspAI | GCGC | 3 cut(s) | 8, 592, 971 |
| KasI | GGCGCC | 1 cut(s) | 970 |
| Ksp22I | TGATCA | 1 cut(s) | 219 |
| KspAI | GTTAAC | 1 cut(s) | 829 |
| Kzo9I | GATC | 4 cut(s) | 187, 219, 1063, 1148 |
| LguI | GCTCTTC | 1 cut(s) | 1080 |
| LmnI | GCTCC | 1 cut(s) | 525 |
| Lsp1109I | GCAGC | 4 cut(s) | 22, 259, 874, 877 |
| LweI | GCATC | 5 cut(s) | 603, 918, 925, 951, 1395 |
| MaeI | CTAG | 1 cut(s) | 806 |
| MaeII | ACGT | 1 cut(s) | 231 |
| MaeIII | GTNAC | 7 cut(s) | 31, 58, 388, 447, 494, 730, 1102 |
| MalI | GATC | 4 cut(s) | 189, 221, 1065, 1150 |
| MbiI | CCGCTC | 1 cut(s) | 1073 |
| MboI | GATC | 4 cut(s) | 187, 219, 1063, 1148 |
| MflI | RGATCY | 1 cut(s) | 1148 |
| MhlI | GDGCHC | 3 cut(s) | 237, 375, 530 |
| MluCI | AATT | 5 cut(s) | 612, 621, 725, 799, 1408 |
| Mly113I | GGCGCC | 1 cut(s) | 971 |
| MlyI | GAGTC | 2 cut(s) | 90, 326 |
| MmeI | TCCRAC | 1 cut(s) | 503 |
| Mph1103I | ATGCAT | 1 cut(s) | 699 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1089, 1335 |
| MseI | TTAA | 4 cut(s) | 458, 828, 1026, 1373 |
| MslI | CAYNNNNRTG | 6 cut(s) | 230, 384, 599, 692, 696, 1050 |
| MspA1I | CMGCKG | 2 cut(s) | 250, 887 |
| MspCI | CTTAAG | 1 cut(s) | 457 |
| MspI | CCGG | 2 cut(s) | 492, 519 |
| MspR9I | CCNGG | 2 cut(s) | 213, 1013 |
| Mva1269I | GAATGC | 3 cut(s) | 634, 687, 906 |
| MvaI | CCWGG | 2 cut(s) | 213, 1013 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 125, 470, 515, 710, 1079, 1233, 1355 |
| NarI | GGCGCC | 1 cut(s) | 971 |
| NcoI | CCATGG | 3 cut(s) | 63, 754, 1206 |
| NdeI | CATATG | 1 cut(s) | 715 |
| NdeII | GATC | 4 cut(s) | 187, 219, 1063, 1148 |
| NheI | GCTAGC | 1 cut(s) | 805 |
| NlaIV | GGNNCC | 4 cut(s) | 69, 972, 1150, 1212 |
| NmuCI | GTSAC | 4 cut(s) | 58, 494, 730, 1102 |
| NsiI | ATGCAT | 1 cut(s) | 699 |
| NspI | RCATGY | 5 cut(s) | 422, 468, 697, 701, 1358 |
| OliI | CACNNNNGTG | 2 cut(s) | 230, 384 |
| PaeI | GCATGC | 1 cut(s) | 1358 |
| PciSI | GCTCTTC | 1 cut(s) | 1080 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 99, 201 |
| PctI | GAATGC | 3 cut(s) | 634, 687, 906 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1089, 1335 |
| PfeI | GAWTC | 4 cut(s) | 338, 476, 721, 1312 |
| Pfl23II | CGTACG | 1 cut(s) | 312 |
| PkrI | GCNGC | 5 cut(s) | 12, 249, 811, 889, 892 |
| PleI | GAGTC | 2 cut(s) | 89, 325 |
| PluTI | GGCGCC | 1 cut(s) | 974 |
| PmaCI | CACGTG | 1 cut(s) | 232 |
| PmlI | CACGTG | 1 cut(s) | 232 |
| PpsI | GAGTC | 2 cut(s) | 89, 325 |
| Ppu21I | YACGTR | 1 cut(s) | 232 |
| Psp124BI | GAGCTC | 1 cut(s) | 375 |
| Psp6I | CCWGG | 2 cut(s) | 211, 1011 |
| PspCI | CACGTG | 1 cut(s) | 232 |
| PspFI | CCCAGC | 1 cut(s) | 250 |
| PspGI | CCWGG | 2 cut(s) | 211, 1011 |
| PspLI | CGTACG | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 4 cut(s) | 69, 972, 1150, 1212 |
| PspPI | GGNCC | 3 cut(s) | 67, 516, 1203 |
| PstNI | CAGNNNCTG | 1 cut(s) | 250 |
| PsuI | RGATCY | 1 cut(s) | 1148 |
| PvuII | CAGCTG | 1 cut(s) | 250 |
| RsaI | GTAC | 4 cut(s) | 314, 1010, 1128, 1244 |
| RsaNI | GTAC | 4 cut(s) | 313, 1009, 1127, 1243 |
| RseI | CAYNNNNRTG | 6 cut(s) | 230, 384, 599, 692, 696, 1050 |
| SacI | GAGCTC | 1 cut(s) | 375 |
| SapI | GCTCTTC | 1 cut(s) | 1080 |
| SaqAI | TTAA | 4 cut(s) | 458, 828, 1026, 1373 |
| SatI | GCNGC | 5 cut(s) | 11, 248, 810, 888, 891 |
| Sau3AI | GATC | 4 cut(s) | 187, 219, 1063, 1148 |
| Sau96I | GGNCC | 3 cut(s) | 67, 516, 1203 |
| ScaI | AGTACT | 1 cut(s) | 1128 |
| SchI | GAGTC | 2 cut(s) | 90, 326 |
| ScrFI | CCNGG | 2 cut(s) | 213, 1013 |
| SduI | GDGCHC | 3 cut(s) | 237, 375, 530 |
| SetI | ASST | 8 cut(s) | 234, 252, 375, 561, 919, 1014, 1101, 1161 |
| SfaNI | GCATC | 5 cut(s) | 603, 918, 925, 951, 1395 |
| SfoI | GGCGCC | 1 cut(s) | 972 |
| SgrAI | CRCCGGYG | 1 cut(s) | 491 |
| SinI | GGWCC | 2 cut(s) | 67, 1203 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 230, 384, 599, 692, 696, 1050 |
| SmlI | CTYRAG | 3 cut(s) | 457, 1094, 1154 |
| SmoI | CTYRAG | 3 cut(s) | 457, 1094, 1154 |
| SphI | GCATGC | 1 cut(s) | 1358 |
| Sse9I | AATT | 5 cut(s) | 612, 621, 725, 799, 1408 |
| SsiI | CCGC | 7 cut(s) | 88, 507, 666, 809, 861, 885, 1071 |
| SspDI | GGCGCC | 1 cut(s) | 970 |
| SspMI | CTAG | 1 cut(s) | 806 |
| SstI | GAGCTC | 1 cut(s) | 375 |
| StyD4I | CCNGG | 2 cut(s) | 211, 1011 |
| StyI | CCWWGG | 3 cut(s) | 63, 754, 1206 |
| TaaI | ACNGT | 7 cut(s) | 95, 763, 786, 820, 1090, 1247, 1286 |
| TaiI | ACGT | 1 cut(s) | 234 |
| TaqI | TCGA | 2 cut(s) | 108, 186 |
| TaqII | GACCGA | 1 cut(s) | 122 |
| TasI | AATT | 5 cut(s) | 612, 621, 725, 799, 1408 |
| TatI | WGTACW | 2 cut(s) | 1126, 1242 |
| TauI | GCSGC | 1 cut(s) | 812 |
| TfiI | GAWTC | 4 cut(s) | 338, 476, 721, 1312 |
| Tru1I | TTAA | 4 cut(s) | 458, 828, 1026, 1373 |
| Tru9I | TTAA | 4 cut(s) | 458, 828, 1026, 1373 |
| TscAI | CASTG | 2 cut(s) | 447, 884 |
| TseFI | GTSAC | 4 cut(s) | 58, 494, 730, 1102 |
| TseI | GCWGC | 4 cut(s) | 10, 247, 887, 890 |
| Tsp45I | GTSAC | 4 cut(s) | 58, 494, 730, 1102 |
| TspDTI | ATGAA | 5 cut(s) | 330, 641, 1034, 1155, 1313 |
| TspRI | CASTG | 2 cut(s) | 447, 884 |
| Vha464I | CTTAAG | 1 cut(s) | 457 |
| VneI | GTGCAC | 1 cut(s) | 233 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 1203 |
| XapI | RAATTY | 1 cut(s) | 1408 |
| XceI | RCATGY | 5 cut(s) | 422, 468, 697, 701, 1358 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 61 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1089, 1335 |
| XspI | CTAG | 1 cut(s) | 806 |
| ZrmI | AGTACT | 1 cut(s) | 1128 |
| Zsp2I | ATGCAT | 1 cut(s) | 699 |