Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011557

Physical Location & Seq

Genomic Coordinates Forward (+)

14416352 .. 14417308

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G226800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAATGCAACTGATGGATTACTACTTGCAACAACAGATACTGCCAAAGAACTGAAAACTGGGATTCACATGCATGTTGCAGAGATAGCATATGAGAATCAATTTGTGACAGAGACGCAAAAAGTTGACCATGGAACGGTCATACACTTGGAGAAGATACAGTTTCTTCACGACAATTTGCTAGCGGCTCATACAGTTTGGGTCAACCCTGCTGAGACTGATTGTCTTTCAAGGGATGGTGTCAAAGTATCTCACTGCCCTGCTAGATGCTTGATGCTGGCATCTGTCTCTTTGGGAACAGATGGGGCACCCTCAAATAATAGAATGAGCAGAGTTGATGAGATGTACCTGGCTTCTCTGATTAACAAAGGACGGGAAGTTCATACAAATGGGACAACTGATCCTACTGCTCTTCCTGCTGAAACAGTTCTCAAGCTAAATGGCGACTTTAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

153

Amino Acids

16.58

Weight (kDa)

5.68

Isoelectric Point (pI)

16.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011557)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23250 FvH4_4g23250 FvH4_4g23250 FvH4_4g23250
malus_domestica	MD10G1063400.v1.1 MD13G1123400.v1.1 MD16G1124200.v1.1
prunus_persica	Prupe.1G221400_v2.0.a1 Prupe.4G226800_v2.0.a1
pyrus_communis	pycom16g10610
rosa_chinensis	RchiOBHm_Chr4g0429611
rosa_laevigata	RLG00000007058
rosa_multiflora	Rmu_sc0006590.1_g000013 Rmu_sc0013109.1_g000001 Rmu_sc0017032.1_g000003
rosa_roxburghii	Rroxscaffold_5G00371300
rosa_rugosa	Rorug04G0237300
rosa_samantha	Rh4BG298900 Rh4CG314500
rosa_wichuraiana	Rw4G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	231
AhdI	GACNNNNNGTC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	348
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
Alw26I	GTCTC	3 cut(s)	107, 209, 292
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	426
AsuNHI	GCTAGC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	307
BccI	CCATC	3 cut(s)	8, 230, 296
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	3 cut(s)	107, 209, 292
BfaI	CTAG	2 cut(s)	182, 264
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	350
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	3 cut(s)	257, 264, 290
BmtI	GCTAGC	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	3 cut(s)	107, 209, 292
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	400
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	309
BspOI	GCTAGC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	400
BssT1I	CCWWGG	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	4 cut(s)	139, 162, 196, 427
Bst6I	CTCTTC	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	183, 279
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	3 cut(s)	107, 209, 292
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 416
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	2 cut(s)	73, 77
BstSCI	CCNGG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	183, 279
CaiI	CAGNNNCTG	1 cut(s)	41
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	3 cut(s)	70, 74, 131
CviJI	RGCY	3 cut(s)	188, 353, 436
CviKI_1	RGCY	3 cut(s)	188, 353, 436
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
DraI	TTTAAA	1 cut(s)	451
DriI	GACNNNNNGTC	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	417
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	130
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	3 cut(s)	73, 77, 134
FaiI	YATR	8 cut(s)	71, 75, 91, 93, 132, 143, 192, 384
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	3 cut(s)	69, 73, 130
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	2 cut(s)	182, 264
GluI	GCNGC	1 cut(s)	186
HgaI	GACGC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	73, 77, 134
HincII	GTYRAC	2 cut(s)	127, 205
HindII	GTYRAC	2 cut(s)	127, 205
HinfI	GANTC	2 cut(s)	64, 97
Hpy166II	GTNNAC	2 cut(s)	127, 205
Hpy188I	TCNGA	2 cut(s)	360, 458
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	127, 205
HpyCH4III	ACNGT	4 cut(s)	139, 162, 196, 427
HpyCH4V	TGCA	4 cut(s)	8, 29, 73, 80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 416
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	73, 77, 134
Kzo9I	GATC	1 cut(s)	400
LguI	GCTCTTC	1 cut(s)	417
LpnPI	CCDG	7 cut(s)	45, 222, 263, 273, 335, 362, 429
LweI	GCATC	3 cut(s)	257, 264, 290
MaeI	CTAG	2 cut(s)	182, 264
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	3 cut(s)	158, 166, 404
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	2 cut(s)	101, 175
MnlI	CCTC	1 cut(s)	322
Mph1103I	ATGCAT	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	2 cut(s)	363, 450
MslI	CAYNNNNRTG	2 cut(s)	72, 387
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	86, 416
NcoI	CCATGG	1 cut(s)	130
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	1 cut(s)	400
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	3 cut(s)	73, 77, 134
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	2 cut(s)	73, 77
PciSI	GCTCTTC	1 cut(s)	417
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	64, 97
PkrI	GCNGC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	72, 387
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	363, 450
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	2 cut(s)	351, 438
SfaNI	GCATC	3 cut(s)	257, 264, 290
SmiMI	CAYNNNNRTG	2 cut(s)	72, 387
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	101, 175
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	2 cut(s)	182, 264
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	4 cut(s)	139, 162, 196, 427
TasI	AATT	2 cut(s)	101, 175
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	64, 97
Tru1I	TTAA	2 cut(s)	363, 450
Tru9I	TTAA	2 cut(s)	363, 450
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	17, 371
TspRI	CASTG	1 cut(s)	260
XceI	RCATGY	2 cut(s)	73, 77
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	2 cut(s)	182, 264
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.