MD13G1171400.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
13994319 .. 13996660
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1171400.v1.1.491

Sequence Viewer

Length: 1134 bp
ATGCCAAAGTCATCTGCTGCTATAGTTGGAGGAGGTGCCGCTGGGGCACTTGCCTTTCTCGCAGTCGTCATCGCATTCGTGTGGTTCTGCAGGAACCATTGCAAGAGTTTTTCGAACAAGAACTCCGAAACGGGTTCCTCAAATCCATCTGCAATAGTGGAATTGAATAGGGGTGGGCCCGACTCGGGAGCAAGACATGGGCCGAGGCTTTTCACATTGGAGGAGTTAAACCAGGCAACCAAGCATTTTGATGAAAGCAGTCTGCTGGGATATGGAAGCTTTGGCCTGGTTTATAAAGGATTGCTGCGTGATGGGACTGTTGTGGCTATCAAACGGAGGTCTGGTGCTCCTAGACGAGATTTTGTCTCAGAGGTGACATACTTGTCGGAGATTCATCATCGACATTTAGTTACAATTCTCGGTTACTGCCAGGAAAGTGGATTTCAAGTACTGGTTTATGAGTATTTACCAAGTGGCAGCATCTGCAATCACCTATATGATACTAGATCGGAGCCATCAACTAAACTCGAGTTTAAGCAAAGGCTATCAATAGCTTTAGGCGCCGCGAAAGGTTTATCCCACTTGCACGGCCTAAAGCCTCCCATAGTACACAAAAACTTCAAAACAGCCAATGTATTGGTTGACGAGAACTTCACTGCTAAGGTTGCAGATGCAGGGATCTCAAAACTGCTAGAGAAGATTGAAGAAGCAGGTCCTTCACACACGCCTAGTGTCAAATTTTTCGAAGATCCAGGGGCTGGATCATCCGGGGTTACCTCCGAAATGAGTGATGTGTACAGCTTCGGGGTTTTCGCTTTGGAGCTTCTAACTGGACAGGAGGCTTTGCATATTGGCTCCTTGGGATCAAATGAAAGCTTATTTCAATGGTTGGAATCACGGCTGAGTTCGAATAACCTAGTGGACCGCCGGCTAACTGGAAGCTTCACAGCAGAGGGAATGAGGGACTTGATCAGGCTGACACTGCAATGCATGAGTTTTCCGGCAAAAAGGCGGCCAAGGATGGAGATGGTTGTGATGGAGCTTGAGAGGATTCAAGAGAAAGAAATGTCAATGACAATAGTCATGGGTGAGGGAACTGATACAATCACTCTTGGGAGTGTACTATTTACTTGA

Protein Analysis

378

Amino Acids

41.16

Weight (kDa)

6.87

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 85 - 342 5.7e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 87 - 348 3.6e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AasI GACNNNNNNGTC 1 cut(s) 382
Acc36I ACCTGC 1 cut(s) 701
AccB1I GGYRCC 2 cut(s) 35, 560
AccB7I CCANNNNNTGG 1 cut(s) 758
AccII CGCG 1 cut(s) 566
AciI CCGC 4 cut(s) 39, 564, 925, 1012
AclWI GGATC 4 cut(s) 686, 743, 769, 871
AcoI YGGCCR 1 cut(s) 1013
AcsI RAATTY 1 cut(s) 737
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 4 cut(s) 450, 609, 797, 1122
AfiI CCNNNNNNNGG 2 cut(s) 185, 758
AgsI TTSAA 6 cut(s) 166, 446, 622, 704, 884, 1055
AjnI CCWGG 4 cut(s) 231, 285, 429, 751
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 7 cut(s) 279, 554, 801, 823, 876, 942, 1042
AluI AGCT 7 cut(s) 279, 554, 801, 823, 876, 942, 1042
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 4 cut(s) 686, 743, 769, 871
AlwNI CAGNNNCTG 2 cut(s) 483, 758
Ama87I CYCGRG 2 cut(s) 184, 527
AoxI GGCC 5 cut(s) 176, 200, 283, 589, 1013
ApaI GGGCCC 1 cut(s) 180
ApeKI GCWGC 3 cut(s) 17, 304, 477
ApoI RAATTY 1 cut(s) 737
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 5 cut(s) 176, 177, 200, 713, 922
AsuC2I CCSGG 1 cut(s) 769
AsuHPI GGTGA 3 cut(s) 385, 482, 1100
AsuII TTCGAA 3 cut(s) 113, 744, 908
AvaI CYCGRG 2 cut(s) 184, 527
AvaII GGWCC 2 cut(s) 713, 922
BaeGI GKGCMC 2 cut(s) 49, 180
BanI GGYRCC 2 cut(s) 35, 560
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 3 cut(s) 4, 291, 489
BccI CCATC 6 cut(s) 154, 305, 523, 1015, 1021, 1030
BceAI ACGGC 2 cut(s) 604, 914
BciT130I CCWGG 4 cut(s) 233, 287, 431, 753
BclI TGATCA 1 cut(s) 969
BcnI CCSGG 1 cut(s) 769
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 5 cut(s) 351, 504, 692, 729, 917
BfmI CTRYAG 2 cut(s) 21, 88
BfoI RGCGCY 1 cut(s) 564
BfuAI ACCTGC 1 cut(s) 701
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 6 cut(s) 18, 39, 305, 478, 564, 1013
BlsI GCNGC 6 cut(s) 19, 40, 306, 479, 565, 1014
BmcAI AGTACT 1 cut(s) 450
Bme1390I CCNGG 5 cut(s) 233, 287, 431, 753, 769
Bme18I GGWCC 2 cut(s) 713, 922
BmeT110I CYCGRG 2 cut(s) 184, 527
BmgT120I GGNCC 5 cut(s) 176, 177, 200, 713, 922
BmiI GGNNCC 7 cut(s) 37, 95, 136, 178, 513, 562, 856
BmrFI CCNGG 5 cut(s) 233, 287, 431, 753, 769
BmsI GCATC 2 cut(s) 489, 661
BoxI GACNNNNGTC 1 cut(s) 1079
Bpu10I CCTNAGC 1 cut(s) 660
Bpu14I TTCGAA 3 cut(s) 113, 744, 908
BpuEI CTTGAG 1 cut(s) 1064
BpuMI CCSGG 1 cut(s) 769
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 5 cut(s) 203, 752, 768, 858, 1016
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 328, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 758
Bse118I RCCGGY 1 cut(s) 927
Bse1I ACTGG 3 cut(s) 456, 835, 940
Bse3DI GCAATG 2 cut(s) 97, 992
BseBI CCWGG 4 cut(s) 233, 287, 431, 753
BseDI CCNNGG 5 cut(s) 203, 752, 768, 858, 1016
BseGI GGATG 2 cut(s) 764, 1026
BseLI CCNNNNNNNGG 2 cut(s) 185, 758
BseMI GCAATG 2 cut(s) 97, 992
BseMII CTCAG 2 cut(s) 381, 893
BseNI ACTGG 3 cut(s) 456, 835, 940
BseRI GAGGAG 2 cut(s) 45, 236
BseSI GKGCMC 2 cut(s) 49, 180
BseXI GCAGC 3 cut(s) 4, 291, 489
BseYI CCCAGC 2 cut(s) 41, 265
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 5 cut(s) 178, 202, 285, 591, 1015
BshNI GGYRCC 2 cut(s) 35, 560
BsiHKAI GWGCWC 1 cut(s) 349
BsiHKCI CYCGRG 2 cut(s) 184, 527
BsiSI CCGG 3 cut(s) 768, 928, 1001
BslFI GGGAC 2 cut(s) 328, 977
BslI CCNNNNNNNGG 2 cut(s) 185, 758
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 2 cut(s) 328, 977
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 5 cut(s) 178, 202, 285, 591, 1015
BsoBI CYCGRG 2 cut(s) 184, 527
Bsp119I TTCGAA 3 cut(s) 113, 744, 908
Bsp120I GGGCCC 1 cut(s) 176
Bsp1286I GDGCHC 3 cut(s) 49, 180, 349
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 6 cut(s) 506, 678, 748, 761, 863, 969
BspACI CCGC 4 cut(s) 39, 564, 925, 1012
BspANI GGCC 5 cut(s) 178, 202, 285, 591, 1015
BspCNI CTCAG 2 cut(s) 380, 894
BspFNI CGCG 1 cut(s) 566
BspLI GGNNCC 7 cut(s) 37, 95, 136, 178, 513, 562, 856
BspMAI CTGCAG 1 cut(s) 92
BspMI ACCTGC 1 cut(s) 701
BspPI GGATC 4 cut(s) 686, 743, 769, 871
BspT104I TTCGAA 3 cut(s) 113, 744, 908
BspT107I GGYRCC 2 cut(s) 35, 560
BsrDI GCAATG 2 cut(s) 97, 992
BsrFI RCCGGY 1 cut(s) 927
BsrGI TGTACA 1 cut(s) 795
BsrI ACTGG 3 cut(s) 456, 835, 940
BssAI RCCGGY 1 cut(s) 927
BssECI CCNNGG 5 cut(s) 203, 752, 768, 858, 1016
BssMI GATC 6 cut(s) 506, 678, 748, 761, 863, 969
BssNI GRCGYC 1 cut(s) 561
BssT1I CCWWGG 2 cut(s) 858, 1016
Bst2UI CCWGG 4 cut(s) 233, 287, 431, 753
Bst4CI ACNGT 1 cut(s) 319
BstACI GRCGYC 1 cut(s) 561
BstAPI GCANNNNNTGC 1 cut(s) 483
BstAUI TGTACA 1 cut(s) 795
BstBI TTCGAA 3 cut(s) 113, 744, 908
BstC8I GCNNGC 1 cut(s) 929
BstDEI CTNAG 3 cut(s) 367, 660, 902
BstEII GGTNACC 1 cut(s) 772
BstF5I GGATG 2 cut(s) 764, 1026
BstFNI CGCG 1 cut(s) 566
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 6 cut(s) 509, 681, 751, 764, 866, 972
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 6 cut(s) 506, 678, 748, 761, 863, 969
BstMWI GCNNNNNNNGC 6 cut(s) 44, 59, 483, 560, 665, 982
BstNI CCWGG 4 cut(s) 233, 287, 431, 753
BstPAI GACNNNNGTC 1 cut(s) 1079
BstPI GGTNACC 1 cut(s) 772
BstSCI CCNGG 5 cut(s) 231, 285, 429, 751, 767
BstSFI CTRYAG 2 cut(s) 21, 88
BstSLI GKGCMC 2 cut(s) 49, 180
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 3 cut(s) 4, 291, 489
BstX2I RGATCY 2 cut(s) 678, 748
BstXI CCANNNNNNTGG 2 cut(s) 437, 637
BstYI RGATCY 2 cut(s) 678, 748
BsuRI GGCC 5 cut(s) 178, 202, 285, 591, 1015
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 2 cut(s) 764, 1026
BtsI GCAGTG 2 cut(s) 654, 980
BtsIMutI CAGTG 2 cut(s) 654, 980
BveI ACCTGC 1 cut(s) 701
Cac8I GCNNGC 1 cut(s) 929
CaiI CAGNNNCTG 2 cut(s) 483, 758
CfoI GCGC 1 cut(s) 563
Cfr10I RCCGGY 1 cut(s) 927
Cfr13I GGNCC 5 cut(s) 176, 177, 200, 713, 922
Csp6I GTAC 4 cut(s) 449, 608, 796, 1121
CviAII CATG 3 cut(s) 197, 991, 1084
CviQI GTAC 4 cut(s) 449, 608, 796, 1121
DdeI CTNAG 3 cut(s) 367, 660, 902
DinI GGCGCC 1 cut(s) 562
DpnI GATC 6 cut(s) 508, 680, 750, 763, 865, 971
DpnII GATC 6 cut(s) 506, 678, 748, 761, 863, 969
DrdI GACNNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 1013
Eco130I CCWWGG 2 cut(s) 858, 1016
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 713, 922
Eco88I CYCGRG 2 cut(s) 184, 527
Eco91I GGTNACC 1 cut(s) 772
EcoO109I RGGNCCY 1 cut(s) 713
EcoO65I GGTNACC 1 cut(s) 772
EcoRII CCWGG 4 cut(s) 231, 285, 429, 751
EcoT14I CCWWGG 2 cut(s) 858, 1016
EcoT22I ATGCAT 1 cut(s) 992
EcoT38I GRGCYC 1 cut(s) 180
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 2 cut(s) 858, 1016
FaeI CATG 3 cut(s) 200, 994, 1087
FaqI GGGAC 2 cut(s) 328, 977
FatI CATG 3 cut(s) 196, 990, 1083
FbaI TGATCA 1 cut(s) 969
Fnu4HI GCNGC 6 cut(s) 18, 39, 305, 478, 564, 1013
FokI GGATG 2 cut(s) 751, 1033
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 6 cut(s) 18, 39, 305, 478, 564, 1013
FspBI CTAG 5 cut(s) 351, 504, 692, 729, 917
GlaI GCGC 1 cut(s) 562
GluI GCNGC 6 cut(s) 18, 39, 305, 478, 564, 1013
GsaI CCCAGC 2 cut(s) 45, 269
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 5 cut(s) 178, 202, 285, 591, 1015
HapII CCGG 3 cut(s) 768, 928, 1001
HhaI GCGC 1 cut(s) 563
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 3 cut(s) 200, 994, 1087
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 3 cut(s) 277, 874, 940
HinfI GANTC 4 cut(s) 182, 391, 893, 1051
HpaII CCGG 3 cut(s) 768, 928, 1001
HphI GGTGA 3 cut(s) 385, 482, 1100
Hpy166II GTNNAC 5 cut(s) 610, 643, 796, 922, 1121
Hpy188I TCNGA 5 cut(s) 127, 370, 388, 511, 781
Hpy188III TCNNGA 2 cut(s) 186, 1055
Hpy8I GTNNAC 5 cut(s) 610, 643, 796, 922, 1121
HpyAV CCTTC 1 cut(s) 726
HpyCH4III ACNGT 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 59, 483, 560, 665, 982
HpyF3I CTNAG 3 cut(s) 367, 660, 902
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 3 cut(s) 200, 994, 1087
HspAI GCGC 1 cut(s) 561
KasI GGCGCC 1 cut(s) 560
KroI GCCGGC 1 cut(s) 927
KroNI GCCGGC 1 cut(s) 929
Ksp22I TGATCA 1 cut(s) 969
Kzo9I GATC 6 cut(s) 506, 678, 748, 761, 863, 969
LmnI GCTCC 6 cut(s) 188, 352, 511, 820, 860, 1039
Lsp1109I GCAGC 3 cut(s) 4, 291, 489
LweI GCATC 2 cut(s) 489, 661
MaeI CTAG 5 cut(s) 351, 504, 692, 729, 917
MaeIII GTNAC 4 cut(s) 373, 409, 422, 772
MalI GATC 6 cut(s) 508, 680, 750, 763, 865, 971
MboI GATC 6 cut(s) 506, 678, 748, 761, 863, 969
MboII GAAGA 3 cut(s) 709, 716, 758
MflI RGATCY 2 cut(s) 678, 748
MhlI GDGCHC 3 cut(s) 49, 180, 349
MluCI AATT 3 cut(s) 161, 414, 737
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 3 cut(s) 7, 366, 870
Mph1103I ATGCAT 1 cut(s) 992
MroNI GCCGGC 1 cut(s) 927
MseI TTAA 2 cut(s) 227, 534
MslI CAYNNNNRTG 4 cut(s) 79, 249, 495, 985
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 3 cut(s) 768, 928, 1001
MspR9I CCNGG 5 cut(s) 233, 287, 431, 753, 769
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 4 cut(s) 233, 287, 431, 753
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 6 cut(s) 44, 59, 483, 560, 665, 982
NaeI GCCGGC 1 cut(s) 929
NarI GGCGCC 1 cut(s) 561
NciI CCSGG 1 cut(s) 769
NdeII GATC 6 cut(s) 506, 678, 748, 761, 863, 969
NgoMIV GCCGGC 1 cut(s) 927
NlaIII CATG 3 cut(s) 200, 994, 1087
NlaIV GGNNCC 7 cut(s) 37, 95, 136, 178, 513, 562, 856
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 992
NspV TTCGAA 3 cut(s) 113, 744, 908
PaeR7I CTCGAG 1 cut(s) 527
PctI GAATGC 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 929
PfeI GAWTC 3 cut(s) 391, 893, 1051
PflMI CCANNNNNTGG 1 cut(s) 758
PkrI GCNGC 6 cut(s) 19, 40, 306, 479, 565, 1014
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 176
PpuMI RGGWCCY 1 cut(s) 713
PshAI GACNNNNGTC 1 cut(s) 1079
PsiI TTATAA 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 4 cut(s) 231, 285, 429, 751
PspEI GGTNACC 1 cut(s) 772
PspFI CCCAGC 2 cut(s) 41, 265
PspGI CCWGG 4 cut(s) 231, 285, 429, 751
PspN4I GGNNCC 7 cut(s) 37, 95, 136, 178, 513, 562, 856
PspOMI GGGCCC 1 cut(s) 176
PspPI GGNCC 5 cut(s) 176, 177, 200, 713, 922
PspPPI RGGWCCY 1 cut(s) 713
PspXI VCTCGAGB 1 cut(s) 527
PstI CTGCAG 1 cut(s) 92
PstNI CAGNNNCTG 2 cut(s) 483, 758
PsuI RGATCY 2 cut(s) 678, 748
RsaI GTAC 4 cut(s) 450, 609, 797, 1122
RsaNI GTAC 4 cut(s) 449, 608, 796, 1121
RseI CAYNNNNRTG 4 cut(s) 79, 249, 495, 985
SaqAI TTAA 2 cut(s) 227, 534
SatI GCNGC 6 cut(s) 18, 39, 305, 478, 564, 1013
Sau3AI GATC 6 cut(s) 506, 678, 748, 761, 863, 969
Sau96I GGNCC 5 cut(s) 176, 177, 200, 713, 922
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 5 cut(s) 233, 287, 431, 753, 769
SduI GDGCHC 3 cut(s) 49, 180, 349
SfaNI GCATC 2 cut(s) 489, 661
SfcI CTRYAG 2 cut(s) 21, 88
SfoI GGCGCC 1 cut(s) 562
Sfr274I CTCGAG 1 cut(s) 527
SfuI TTCGAA 3 cut(s) 113, 744, 908
SinI GGWCC 2 cut(s) 713, 922
SlaI CTCGAG 1 cut(s) 527
SmiMI CAYNNNNRTG 4 cut(s) 79, 249, 495, 985
SmlI CTYRAG 2 cut(s) 527, 1043
SmoI CTYRAG 2 cut(s) 527, 1043
Sse9I AATT 3 cut(s) 161, 414, 737
SsiI CCGC 4 cut(s) 39, 564, 925, 1012
SspDI GGCGCC 1 cut(s) 560
SspMI CTAG 5 cut(s) 351, 504, 692, 729, 917
StyD4I CCNGG 5 cut(s) 231, 285, 429, 751, 767
StyI CCWWGG 2 cut(s) 858, 1016
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 5 cut(s) 113, 400, 528, 744, 908
TasI AATT 3 cut(s) 161, 414, 737
TatI WGTACW 4 cut(s) 448, 607, 795, 1120
TauI GCSGC 3 cut(s) 41, 566, 1015
TfiI GAWTC 3 cut(s) 391, 893, 1051
Tru1I TTAA 2 cut(s) 227, 534
Tru9I TTAA 2 cut(s) 227, 534
TscAI CASTG 2 cut(s) 661, 987
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 3 cut(s) 17, 304, 477
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 267, 383, 885
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 2 cut(s) 661, 987
Van91I CCANNNNNTGG 1 cut(s) 758
VpaK11BI GGWCC 2 cut(s) 713, 922
XapI RAATTY 1 cut(s) 737
XhoI CTCGAG 1 cut(s) 527
XspI CTAG 5 cut(s) 351, 504, 692, 729, 917
ZrmI AGTACT 1 cut(s) 450
Zsp2I ATGCAT 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.