Rorug04G0172000

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
30224398 .. 30227474
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0172000.1

Sequence Viewer

Length: 315 bp
ATGGAGGCTGCTCGGAAGCTGGTGTTGGTCGTGGCGGCTGTGCTGGTGGTGGTTTCTTGCATTAATGTAGATGTCTCCGATGCGCAGACCATTTGCAATGTGTCTGTGAATAACTTGATGTCCTGCAAGCCGGCCGTAACAAAACCTAACCCTTCCAGCCCGACCAAGACCTGCTGCTCGGCGCTGTCGCACGCAGACTTGAAGTGCCTCTGCTCCTACAGGAACTCGAACCTGTTGCCTTCTCTGGGGATTGACCCTAACCTTGCCATGCAGCTTCCTGCCAAGTGCAAGCTTCCTCACCCTGCCAATTGCTAG

Protein Analysis

104

Amino Acids

10.93

Weight (kDa)

8.63

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 21 - 102 4.1e-12 Probable lipid transfer
Tryp_alpha_amyl PF00234 32 - 104 6.7e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 179
AciI CCGC 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 3 cut(s) 19, 274, 292
AluI AGCT 3 cut(s) 19, 274, 292
Alw26I GTCTC 1 cut(s) 79
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 8, 174, 271
AseI ATTAAT 1 cut(s) 63
AspLEI GCGC 2 cut(s) 85, 184
AsuHPI GGTGA 1 cut(s) 290
BbvI GCAGC 2 cut(s) 161, 283
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 313
BfmI CTRYAG 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 4 cut(s) 9, 36, 175, 272
BlsI GCNGC 4 cut(s) 10, 37, 176, 273
BmsI GCATC 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 103
BseX3I CGGCCG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 161, 283
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 135
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 134
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BstC8I GCNNGC 4 cut(s) 128, 132, 192, 290
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 2 cut(s) 85, 184
BstMAI GTCTC 1 cut(s) 79
BstMCI CGRYCG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 161, 283
BstZI CGGCCG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 134
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 4 cut(s) 128, 132, 192, 290
CfoI GCGC 2 cut(s) 85, 184
Cfr10I RCCGGY 1 cut(s) 130
CviAII CATG 1 cut(s) 268
CviJI RGCY 8 cut(s) 8, 19, 38, 130, 134, 159, 274, 292
CviKI_1 RGCY 8 cut(s) 8, 19, 38, 130, 134, 159, 274, 292
EaeI YGGCCR 1 cut(s) 132
EagI CGGCCG 1 cut(s) 132
EclXI CGGCCG 1 cut(s) 132
Eco52I CGGCCG 1 cut(s) 132
FaeI CATG 1 cut(s) 271
FaiI YATR 1 cut(s) 269
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 9, 36, 175, 272
Fsp4HI GCNGC 4 cut(s) 9, 36, 175, 272
FspBI CTAG 1 cut(s) 313
FspI TGCGCA 1 cut(s) 84
GlaI GCGC 2 cut(s) 84, 183
GluI GCNGC 4 cut(s) 9, 36, 175, 272
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 131
HhaI GCGC 2 cut(s) 85, 184
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 2 cut(s) 83, 182
HinP1I GCGC 2 cut(s) 83, 182
HindIII AAGCTT 1 cut(s) 290
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 15, 79
HpyAV CCTTC 2 cut(s) 162, 249
HpyCH4V TGCA 5 cut(s) 60, 96, 126, 271, 288
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 2 cut(s) 83, 182
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 218
Lsp1109I GCAGC 2 cut(s) 161, 283
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 136
MfeI CAATTG 1 cut(s) 307
MluCI AATT 1 cut(s) 307
MnlI CCTC 2 cut(s) 218, 306
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 1 cut(s) 63
MspI CCGG 1 cut(s) 131
MunI CAATTG 1 cut(s) 307
NaeI GCCGGC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 158
NsbI TGCGCA 1 cut(s) 84
PdiI GCCGGC 1 cut(s) 132
PkrI GCNGC 4 cut(s) 10, 37, 176, 273
PshBI ATTAAT 1 cut(s) 63
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 4 cut(s) 9, 36, 175, 272
SetI ASST 7 cut(s) 21, 148, 173, 234, 264, 276, 294
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 217
Sse9I AATT 1 cut(s) 307
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 313
TaqI TCGA 1 cut(s) 227
TasI AATT 1 cut(s) 307
TauI GCSGC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseI GCWGC 3 cut(s) 8, 174, 271
VspI ATTAAT 1 cut(s) 63
XspI CTAG 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.