Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001781

Physical Location & Seq

Genomic Coordinates Forward (+)

30241692 .. 30242238

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0172100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTGCCCAACCCCAAAGATGAGGCTTACCTCGATAGCATAATATTCCCAAGCGCATCAAGCTCTTCAAGGCCATCCAGGCTGAGCAGCTCACCTAACGGGAAGGTGAAGGAGGGAAATAAGTGGGTGACTTCACAGTTGGATGTTGCAAAGGAGATATCAAACATCTTGGCGTCGAATGCATTGGTTCTTAAGATCAATGGGGTATTGTGGGACATGAGTAGACCTTTGGAGGGTGACTGTGAGCGGAAGTTATTCACATTTGACAGTGATGAAGGTCGGGACGCTTTCTGGCATTCTAGCGCACACATTCTCGGACAGGTACTTCAGTTGGAGTTTGGATGCAAACACTGTAATGGTCCTTACACCACTAGTAAAGGAGAGGGTTTCTATTATGATGCAATCTTTTATGGTGATTTGGGTTCGAATGGTGAACACTTACAACAAATTGAATTAGGAGTAGACAAGGGTGTTAAGGCCGAACAACCATTTCAGCGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

167

Amino Acids

18.45

Weight (kDa)

5.35

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGS	PF02824	32 - 85	3.1e-09	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26700 AT3G26700 AT3G26700 AT3G26700 AT3G26700
fragaria_vesca	FvH4_4g17600 FvH4_4g17600 FvH4_4g17600 FvH4_4g17600
malus_domestica	MD13G1171400.v1.1 MD16G1173100.v1.1
prunus_persica	Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1
pyrus_communis	pycom13g14700 pycom16g14510
rosa_chinensis	RchiOBHm_Chr4g0421511
rosa_laevigata	RLG00000007674
rosa_multiflora	Rmu_sc0001962.1_g000026 Rmu_ssc0000438.1_g000055
rosa_roxburghii	Rroxscaffold_5G00363760
rosa_rugosa	Rorug04G0172000 Rorug04G0172000 Rorug04G0172000 Rorug04G0172000 Rorug04G0172100
rosa_samantha	Rh4AG232500 Rh4BG235300 Rh4CG246900 Rh4DG231100
rosa_wichuraiana	Rw4G020120 Rw4G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	2 cut(s)	223, 462
AciI	CCGC	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	69, 452
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	63, 90
AluI	AGCT	2 cut(s)	63, 90
AoxI	GGCC	2 cut(s)	71, 477
ApeKI	GCWGC	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	56, 305
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	6 cut(s)	84, 118, 139, 248, 425, 443
AsuII	TTCGAA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	9
BaeI	ACNNNNGTAYC	2 cut(s)	314, 347
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	79
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	2 cut(s)	300, 372
BfrI	CTTAAG	1 cut(s)	191
BglI	GCCNNNNNGGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	88
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	3 cut(s)	65, 332, 388
Bpu1102I	GCTNAGC	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	79
BseGI	GGATG	3 cut(s)	74, 148, 347
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	99
BshFI	GGCC	2 cut(s)	73, 479
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	2 cut(s)	227, 296
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	227, 296
BsmI	GAATGC	2 cut(s)	184, 295
BsnI	GGCC	2 cut(s)	73, 479
Bsp119I	TTCGAA	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	195
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	73, 479
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	247
BssMI	GATC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	4 cut(s)	138, 242, 269, 353
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	3 cut(s)	74, 148, 347
BstHHI	GCGC	2 cut(s)	56, 305
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 79, 179
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	73, 479
BtsCI	GGATG	3 cut(s)	74, 148, 347
BtsIMutI	CAGTG	2 cut(s)	274, 349
CfoI	GCGC	2 cut(s)	56, 305
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	2 cut(s)	162, 293
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	6 cut(s)	26, 63, 73, 82, 90, 479
CviKI_1	RGCY	6 cut(s)	26, 63, 73, 82, 90, 479
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	184
FaeI	CATG	1 cut(s)	220
FaiI	YATR	4 cut(s)	41, 218, 396, 411
FaqI	GGGAC	2 cut(s)	227, 296
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	2 cut(s)	223, 462
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	3 cut(s)	61, 155, 354
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	300, 372
GlaI	GCGC	2 cut(s)	55, 304
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	73, 479
HgaI	GACGC	2 cut(s)	162, 293
HhaI	GCGC	2 cut(s)	56, 305
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	2 cut(s)	54, 303
HinP1I	GCGC	2 cut(s)	54, 303
HphI	GGTGA	6 cut(s)	84, 118, 139, 248, 425, 443
Hpy166II	GTNNAC	3 cut(s)	224, 434, 463
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	3 cut(s)	224, 434, 463
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	3 cut(s)	97, 103, 269
HpyCH4III	ACNGT	4 cut(s)	138, 242, 269, 353
HpyCH4V	TGCA	4 cut(s)	149, 182, 345, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 79, 179
HpyF3I	CTNAG	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	2 cut(s)	54, 303
Kzo9I	GATC	1 cut(s)	195
LguI	GCTCTTC	1 cut(s)	70
LpnPI	CCDG	4 cut(s)	64, 91, 277, 305
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	3 cut(s)	65, 332, 388
MaeI	CTAG	2 cut(s)	300, 372
MaeIII	GTNAC	2 cut(s)	127, 236
MalI	GATC	1 cut(s)	197
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	1 cut(s)	195
MboII	GAAGA	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	447, 452
MmeI	TCCRAC	2 cut(s)	120, 312
MnlI	CCTC	5 cut(s)	16, 41, 106, 226, 376
Mph1103I	ATGCAT	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	2 cut(s)	192, 474
MslI	CAYNNNNRTG	1 cut(s)	354
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	2 cut(s)	184, 295
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	60, 79, 179
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	127, 236
NsiI	ATGCAT	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	70
PctI	GAATGC	2 cut(s)	184, 295
PdmI	GAANNNNTTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	192, 474
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	8 cut(s)	33, 65, 92, 97, 108, 229, 280, 324
SfaNI	GCATC	3 cut(s)	65, 332, 388
SfuI	TTCGAA	1 cut(s)	425
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	2 cut(s)	447, 452
SsiI	CCGC	1 cut(s)	247
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	2 cut(s)	300, 372
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	4 cut(s)	138, 242, 269, 353
TaqI	TCGA	3 cut(s)	33, 176, 425
TasI	AATT	2 cut(s)	447, 452
Tru1I	TTAA	2 cut(s)	192, 474
Tru9I	TTAA	2 cut(s)	192, 474
TscAI	CASTG	2 cut(s)	274, 356
TseFI	GTSAC	2 cut(s)	127, 236
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	2 cut(s)	127, 236
TspDTI	ATGAA	1 cut(s)	288
TspRI	CASTG	2 cut(s)	274, 356
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	359
XmiI	GTMKAC	2 cut(s)	223, 462
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	300, 372
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.