Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0001781

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG231100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCAAAGTCATCTTCTGCAGCCATAGTTGGAAGTGCTGTTGGGGCACTTGCCTTGGTGGCAATAGTCGTCGGATTCATGTGGTTCTGCAAGACACAACGTAATAGGCATTTCTCCAACAAGAACTCAGAGACTGCTTCTTCAGATCCATCTGCAATAGTTGAGCTGTCTAGGGGTGGACCTAGTTCAGCAAGGCACTTCACAATGGAGGAGTTAGAGCAAGCTACCAAGCATTTTGATGAAAGCAGTCTTCTGGGATATGGAAGTTTTGGACTTGTTTATAAAGGTTTGCTCCGTGATGGGACGGTTGTGGCTATCAAAAGGCGCCCCGGTGCTCCTAGACTGGAGTTTGTCTCAGAGGTAACGTACTTGTCGCAGATTCATCACCGAAACTTAGTTAAAATACTGGGTTACAGCCAGGAAAGTGGATTTCAAATGTTGGTTTTTGAATATGTACCAAATGGAAGCATGTGCAATCACCTATATGATACTAAACAGGATCCATCAACTAAACTAGAGTTTAAGCAAAGGCTATCCATAGCTCTAGGGGCTGCTAAAGGTTTATGCCACTTGCATGGCCTAAGCCCTCCAATCATACACAAGAACTTCCAAACTGCCAATGTCTTGGTTGATGAGAACTTCATTGCTAAAGTTGCAGATGCAGGGATCTCAAAACTACTTGAAAAGATAGAAGAAGCAGGTCCTTCTCACACAACCAGTGTCAATTTTTTCCAAGATCCAGAGGTTGGACCATCTGAGAGAGCTTCATCTGAAGTGAGTGATGTTTACAGCTTTGGTGTTTTCCTAATGGAGCTTCTAACTGGAAAGGAGGCTTTGGATATTGGCTCCTTGGGATCTAATGAAAGTTTATTTCAATGGGTGGAATCGCGGCTGAGTTCAAACAATTTAGTGGATAGACGGCTTGCTGGAAGCTTCACTGCAGAGGGAATGAGGGACTTGATCAGGCTAACACTACAGTGCATGAGTTTTCTGGGAAAAAGACGACCCAGGATGGAAATGGTTGTGGTTGAGCTTGAGAGAATTCAAGAGAAAGAAATGGCAATGACCACAGTCATGGGTGAGGGAACTGATACAATCACTCTTGGGAGTGTACTATTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

374

Amino Acids

41.12

Weight (kDa)

6.23

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 280	1.1e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	83 - 344	2.8e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26700 AT3G26700 AT3G26700 AT3G26700 AT3G26700
fragaria_vesca	FvH4_4g17600 FvH4_4g17600 FvH4_4g17600 FvH4_4g17600
malus_domestica	MD13G1171400.v1.1 MD16G1173100.v1.1
prunus_persica	Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1
pyrus_communis	pycom13g14700 pycom16g14510
rosa_chinensis	RchiOBHm_Chr4g0421511
rosa_laevigata	RLG00000007674
rosa_multiflora	Rmu_sc0001962.1_g000026 Rmu_ssc0000438.1_g000055
rosa_roxburghii	Rroxscaffold_5G00363760
rosa_rugosa	Rorug04G0172000 Rorug04G0172000 Rorug04G0172000 Rorug04G0172000 Rorug04G0172100
rosa_samantha	Rh4AG232500 Rh4BG235300 Rh4CG246900 Rh4DG231100
rosa_wichuraiana	Rw4G020120 Rw4G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccII	CGCG	1 cut(s)	889
AciI	CCGC	1 cut(s)	889
AclWI	GGATC	6 cut(s)	140, 494, 507, 674, 731, 862
AcsI	RAATTY	1 cut(s)	1041
AcuI	CTGAAG	2 cut(s)	126, 792
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	3 cut(s)	368, 456, 1113
AfiI	CCNNNNNNNGG	1 cut(s)	746
AgsI	TTSAA	6 cut(s)	434, 449, 683, 875, 900, 1046
AjnI	CCWGG	2 cut(s)	417, 1007
AleI	CACNNNNGTG	1 cut(s)	976
AluBI	AGCT	8 cut(s)	166, 224, 542, 764, 792, 814, 933, 1033
AluI	AGCT	8 cut(s)	166, 224, 542, 764, 792, 814, 933, 1033
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	125, 358
AlwI	GGATC	6 cut(s)	140, 494, 507, 674, 731, 862
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	2 cut(s)	20, 551
ApoI	RAATTY	1 cut(s)	1041
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	3 cut(s)	179, 701, 749
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	3 cut(s)	377, 470, 1091
AvaII	GGWCC	3 cut(s)	179, 701, 749
BaeGI	GKGCMC	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	32, 538
BccI	CCATC	5 cut(s)	157, 293, 511, 760, 1006
BceAI	ACGGC	1 cut(s)	935
BciT130I	CCWGG	2 cut(s)	419, 1009
BclI	TGATCA	1 cut(s)	960
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	125, 358
BfaI	CTAG	5 cut(s)	171, 183, 339, 515, 545
BfmI	CTRYAG	3 cut(s)	18, 939, 974
BfoI	RGCGCY	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	689
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	21, 552, 890
BlsI	GCNGC	3 cut(s)	22, 553, 891
Bme1390I	CCNGG	3 cut(s)	330, 419, 1009
Bme18I	GGWCC	3 cut(s)	179, 701, 749
BmgT120I	GGNCC	3 cut(s)	179, 701, 749
BmiI	GGNNCC	3 cut(s)	326, 501, 847
BmrFI	CCNGG	3 cut(s)	330, 419, 1009
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	649
BmuI	ACTGGG	1 cut(s)	416
BoxI	GACNNNNGTC	1 cut(s)	1070
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	1055
BpuMI	CCSGG	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	4 cut(s)	54, 328, 849, 1007
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	4 cut(s)	348, 411, 717, 826
Bse3DI	GCAATG	2 cut(s)	642, 1068
BseBI	CCWGG	2 cut(s)	419, 1009
BseDI	CCNNGG	4 cut(s)	54, 328, 849, 1007
BseGI	GGATG	1 cut(s)	1017
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMI	GCAATG	2 cut(s)	642, 1068
BseMII	CTCAG	4 cut(s)	141, 369, 747, 884
BseNI	ACTGG	4 cut(s)	348, 411, 717, 826
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	32, 538
Bsh1236I	CGCG	1 cut(s)	889
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	316, 968
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	2 cut(s)	125, 358
BsmFI	GGGAC	2 cut(s)	316, 968
BsnI	GGCC	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	49, 337
Bsp143I	GATC	6 cut(s)	145, 499, 666, 736, 854, 960
BspACI	CCGC	1 cut(s)	889
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	4 cut(s)	140, 368, 748, 885
BspFNI	CGCG	1 cut(s)	889
BspLI	GGNNCC	3 cut(s)	326, 501, 847
BspMAI	CTGCAG	2 cut(s)	22, 943
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	6 cut(s)	140, 494, 507, 674, 731, 862
BspT107I	GGYRCC	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	642, 1068
BsrI	ACTGG	4 cut(s)	348, 411, 717, 826
BssECI	CCNNGG	4 cut(s)	54, 328, 849, 1007
BssMI	GATC	6 cut(s)	145, 499, 666, 736, 854, 960
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	2 cut(s)	54, 849
Bst2UI	CCWGG	2 cut(s)	419, 1009
Bst4CI	ACNGT	3 cut(s)	307, 978, 1072
BstACI	GRCGYC	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	222, 924
BstDEI	CTNAG	6 cut(s)	127, 355, 394, 581, 756, 893
BstF5I	GGATG	1 cut(s)	1017
BstFNI	CGCG	1 cut(s)	889
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	6 cut(s)	148, 502, 669, 739, 857, 963
BstMAI	GTCTC	2 cut(s)	125, 358
BstMBI	GATC	6 cut(s)	145, 499, 666, 736, 854, 960
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 59, 548, 653
BstNI	CCWGG	2 cut(s)	419, 1009
BstNSI	RCATGY	1 cut(s)	472
BstPAI	GACNNNNGTC	1 cut(s)	1070
BstSCI	CCNGG	3 cut(s)	328, 417, 1007
BstSFI	CTRYAG	3 cut(s)	18, 939, 974
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	889
BstV1I	GCAGC	2 cut(s)	32, 538
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	5 cut(s)	145, 499, 666, 736, 854
BstXI	CCANNNNNNTGG	4 cut(s)	425, 575, 625, 1075
BstYI	RGATCY	5 cut(s)	145, 499, 666, 736, 854
BsuRI	GGCC	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	1017
BtsI	GCAGTG	1 cut(s)	936
BtsIMutI	CAGTG	3 cut(s)	724, 936, 983
BveI	ACCTGC	1 cut(s)	689
Cac8I	GCNNGC	2 cut(s)	222, 924
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	3 cut(s)	179, 701, 749
Csp6I	GTAC	3 cut(s)	367, 455, 1112
CviAII	CATG	5 cut(s)	79, 469, 575, 982, 1075
CviQI	GTAC	3 cut(s)	367, 455, 1112
DdeI	CTNAG	6 cut(s)	127, 355, 394, 581, 756, 893
DinI	GGCGCC	1 cut(s)	326
DpnI	GATC	6 cut(s)	147, 501, 668, 738, 856, 962
DpnII	GATC	6 cut(s)	145, 499, 666, 736, 854, 960
Eco130I	CCWWGG	2 cut(s)	54, 849
Eco47I	GGWCC	3 cut(s)	179, 701, 749
Eco57I	CTGAAG	2 cut(s)	126, 792
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	1041
EcoRII	CCWGG	2 cut(s)	417, 1007
EcoT14I	CCWWGG	2 cut(s)	54, 849
EgeI	GGCGCC	1 cut(s)	326
EheI	GGCGCC	1 cut(s)	326
ErhI	CCWWGG	2 cut(s)	54, 849
FaeI	CATG	5 cut(s)	82, 472, 578, 985, 1078
FaqI	GGGAC	2 cut(s)	316, 968
FatI	CATG	5 cut(s)	78, 468, 574, 981, 1074
FbaI	TGATCA	1 cut(s)	960
Fnu4HI	GCNGC	3 cut(s)	21, 552, 890
FokI	GGATG	1 cut(s)	1024
Fsp4HI	GCNGC	3 cut(s)	21, 552, 890
FspBI	CTAG	5 cut(s)	171, 183, 339, 515, 545
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	3 cut(s)	21, 552, 890
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	579
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	5 cut(s)	82, 472, 578, 985, 1078
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	931
HinfI	GANTC	3 cut(s)	75, 379, 884
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	3 cut(s)	377, 470, 1091
Hpy166II	GTNNAC	3 cut(s)	179, 787, 1112
Hpy188I	TCNGA	6 cut(s)	74, 130, 145, 358, 757, 772
Hpy188III	TCNNGA	2 cut(s)	740, 1046
Hpy8I	GTNNAC	3 cut(s)	179, 787, 1112
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	714
HpyCH4III	ACNGT	3 cut(s)	307, 978, 1072
HpyCH4IV	ACGT	2 cut(s)	100, 365
HpyCH4V	TGCA	9 cut(s)	20, 90, 155, 474, 574, 656, 662, 941, 981
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 59, 548, 653
HpyF3I	CTNAG	6 cut(s)	127, 355, 394, 581, 756, 893
HpySE526I	ACGT	2 cut(s)	100, 365
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	5 cut(s)	82, 472, 578, 985, 1078
HspAI	GCGC	1 cut(s)	325
KasI	GGCGCC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	960
Kzo9I	GATC	6 cut(s)	145, 499, 666, 736, 854, 960
LmnI	GCTCC	4 cut(s)	297, 340, 811, 851
Lsp1109I	GCAGC	2 cut(s)	32, 538
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	5 cut(s)	171, 183, 339, 515, 545
MaeII	ACGT	2 cut(s)	100, 365
MaeIII	GTNAC	2 cut(s)	361, 410
MalI	GATC	6 cut(s)	147, 501, 668, 738, 856, 962
MboI	GATC	6 cut(s)	145, 499, 666, 736, 854, 960
MboII	GAAGA	4 cut(s)	6, 132, 242, 704
MflI	RGATCY	5 cut(s)	145, 499, 666, 736, 854
MhlI	GDGCHC	2 cut(s)	49, 337
MluCI	AATT	3 cut(s)	724, 904, 1041
Mly113I	GGCGCC	1 cut(s)	325
MmeI	TCCRAC	4 cut(s)	10, 52, 141, 727
MnlI	CCTC	8 cut(s)	202, 352, 597, 736, 823, 937, 945, 1075
MseI	TTAA	2 cut(s)	399, 522
MslI	CAYNNNNRTG	5 cut(s)	237, 483, 573, 976, 1073
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	3 cut(s)	330, 419, 1009
MvaI	CCWGG	2 cut(s)	419, 1009
MvnI	CGCG	1 cut(s)	889
MwoI	GCNNNNNNNGC	4 cut(s)	44, 59, 548, 653
NarI	GGCGCC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	6 cut(s)	145, 499, 666, 736, 854, 960
NlaIII	CATG	5 cut(s)	82, 472, 578, 985, 1078
NlaIV	GGNNCC	3 cut(s)	326, 501, 847
NspI	RCATGY	1 cut(s)	472
OliI	CACNNNNGTG	1 cut(s)	976
PfeI	GAWTC	3 cut(s)	75, 379, 884
PflMI	CCANNNNNTGG	1 cut(s)	746
PkrI	GCNGC	3 cut(s)	22, 553, 891
PluTI	GGCGCC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	701
PshAI	GACNNNNGTC	1 cut(s)	1070
PsiI	TTATAA	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	2 cut(s)	417, 1007
PspGI	CCWGG	2 cut(s)	417, 1007
PspN4I	GGNNCC	3 cut(s)	326, 501, 847
PspPI	GGNCC	3 cut(s)	179, 701, 749
PspPPI	RGGWCCY	1 cut(s)	701
PstI	CTGCAG	2 cut(s)	22, 943
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	5 cut(s)	145, 499, 666, 736, 854
RsaI	GTAC	3 cut(s)	368, 456, 1113
RsaNI	GTAC	3 cut(s)	367, 455, 1112
RseI	CAYNNNNRTG	5 cut(s)	237, 483, 573, 976, 1073
SaqAI	TTAA	2 cut(s)	399, 522
SatI	GCNGC	3 cut(s)	21, 552, 890
Sau3AI	GATC	6 cut(s)	145, 499, 666, 736, 854, 960
Sau96I	GGNCC	3 cut(s)	179, 701, 749
ScrFI	CCNGG	3 cut(s)	330, 419, 1009
SduI	GDGCHC	2 cut(s)	49, 337
SfaNI	GCATC	1 cut(s)	649
SfcI	CTRYAG	3 cut(s)	18, 939, 974
SfoI	GGCGCC	1 cut(s)	326
SinI	GGWCC	3 cut(s)	179, 701, 749
SmiMI	CAYNNNNRTG	5 cut(s)	237, 483, 573, 976, 1073
SmlI	CTYRAG	1 cut(s)	1034
SmoI	CTYRAG	1 cut(s)	1034
Sse9I	AATT	3 cut(s)	724, 904, 1041
SsiI	CCGC	1 cut(s)	889
SspDI	GGCGCC	1 cut(s)	324
SspMI	CTAG	5 cut(s)	171, 183, 339, 515, 545
StyD4I	CCNGG	3 cut(s)	328, 417, 1007
StyI	CCWWGG	2 cut(s)	54, 849
TaaI	ACNGT	3 cut(s)	307, 978, 1072
TaiI	ACGT	2 cut(s)	103, 368
TasI	AATT	3 cut(s)	724, 904, 1041
TatI	WGTACW	1 cut(s)	1111
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	3 cut(s)	75, 379, 884
Tru1I	TTAA	2 cut(s)	399, 522
Tru9I	TTAA	2 cut(s)	399, 522
TscAI	CASTG	3 cut(s)	724, 943, 983
TseI	GCWGC	2 cut(s)	20, 551
TspDTI	ATGAA	6 cut(s)	67, 255, 371, 631, 756, 876
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	3 cut(s)	724, 943, 983
Van91I	CCANNNNNTGG	1 cut(s)	746
VpaK11BI	GGWCC	3 cut(s)	179, 701, 749
XapI	RAATTY	1 cut(s)	1041
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1015
XspI	CTAG	5 cut(s)	171, 183, 339, 515, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.