Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001781

Physical Location & Seq

Genomic Coordinates Forward (+)

40147431 .. 40148642

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG235300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCAAAGTCATCTTCTGCAGCCATAGTTGGAAGTGCTGTTGGGGCACTTGCCTTGGTGGCAATAGTCGTCGGATTCATGTGGTTCTGCAAGACACAACGTAATAGGCATTTCTCCAACAAGAACTCGGAGACTGCTTCTTCAGATCCATCTGCAATAGTTGAGCTGACTAGGGGTGGACCTAGTTCAGCAAGGCACTTCACAATGGAGGAGTTAGAGCAAGCTACCAAGCATTTTGATGAAAGCAGTCTTCTGGGATATGGAAGTTTTGGACTTGTTTATAAAGGTTTGCTCCGTGATGGGACGGTTGTGGCTATCAAAAGGCGCCCCGGTGCTCCTAGACAGGAGTTTGTCTCAGAGGTAACGTACTTGTCGCAGATTCATCACCGAAACTTAGTTAAAATACTGGGTTACTGCCAGGAAAGTGGATTTCAAATGTTGGTTTTTGAATATGTACCAAATGGAAGCATGTGCAATCACCTATATGATACTAAACAGGATCCATCAACTAAACTAGAGTTTAAGCAAAGGCTATCCATAGCTCTAGGGGCTGCTAAAGGTTTATGCCACTTGCATGGCCTAAGGCCTCCAATCATACACAAGAACTTCCAAACTGCCAATGTCTTGGTTGATGAGAACTTCATTGCCAAAGTTGCAGATGCAGGGATCTCAAAACTACTTGAAAAGATAGAAGAAGCAGGTCCTTCTCACACATCCAGTGTCAATTTTTTCCAAGATCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

248

Amino Acids

27.24

Weight (kDa)

8.31

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 232	1.4e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	83 - 233	3.8e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26700 AT3G26700 AT3G26700 AT3G26700 AT3G26700
fragaria_vesca	FvH4_4g17600 FvH4_4g17600 FvH4_4g17600 FvH4_4g17600
malus_domestica	MD13G1171400.v1.1 MD16G1173100.v1.1
prunus_persica	Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1 Prupe.1G139900_v2.0.a1
pyrus_communis	pycom13g14700 pycom16g14510
rosa_chinensis	RchiOBHm_Chr4g0421511
rosa_laevigata	RLG00000007674
rosa_multiflora	Rmu_sc0001962.1_g000026 Rmu_ssc0000438.1_g000055
rosa_roxburghii	Rroxscaffold_5G00363760
rosa_rugosa	Rorug04G0172000 Rorug04G0172000 Rorug04G0172000 Rorug04G0172000 Rorug04G0172100
rosa_samantha	Rh4AG232500 Rh4BG235300 Rh4CG246900 Rh4DG231100
rosa_wichuraiana	Rw4G020120 Rw4G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	324
AclWI	GGATC	5 cut(s)	140, 494, 507, 674, 731
AcuI	CTGAAG	1 cut(s)	126
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	2 cut(s)	368, 456
AgsI	TTSAA	3 cut(s)	434, 449, 683
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	3 cut(s)	166, 224, 542
AluI	AGCT	3 cut(s)	166, 224, 542
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	125, 358
AlwI	GGATC	5 cut(s)	140, 494, 507, 674, 731
AoxI	GGCC	2 cut(s)	577, 584
ApeKI	GCWGC	2 cut(s)	20, 551
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	179, 701
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	377, 470
AvaII	GGWCC	2 cut(s)	179, 701
AxyI	CCTNAGG	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	32, 538
BccI	CCATC	3 cut(s)	157, 293, 511
BciT130I	CCWGG	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	125, 358
BfaI	CTAG	5 cut(s)	171, 183, 339, 515, 545
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	689
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	21, 552
BlsI	GCNGC	2 cut(s)	22, 553
Bme1390I	CCNGG	2 cut(s)	330, 419
Bme18I	GGWCC	2 cut(s)	179, 701
BmgT120I	GGNCC	2 cut(s)	179, 701
BmiI	GGNNCC	2 cut(s)	326, 501
BmrFI	CCNGG	2 cut(s)	330, 419
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	649
BmuI	ACTGGG	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpuMI	CCSGG	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	54, 328
Bse1I	ACTGG	2 cut(s)	411, 717
Bse21I	CCTNAGG	1 cut(s)	581
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	54, 328
BseGI	GGATG	1 cut(s)	713
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	411, 717
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	32, 538
BshFI	GGCC	2 cut(s)	579, 586
BshNI	GGYRCC	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	125, 358
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	579, 586
Bsp1286I	GDGCHC	2 cut(s)	49, 337
Bsp143I	GATC	4 cut(s)	145, 499, 666, 736
BspANI	GGCC	2 cut(s)	579, 586
BspCNI	CTCAG	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	326, 501
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	5 cut(s)	140, 494, 507, 674, 731
BspT107I	GGYRCC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	411, 717
BssECI	CCNNGG	2 cut(s)	54, 328
BssMI	GATC	4 cut(s)	145, 499, 666, 736
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	355, 394, 581
BstF5I	GGATG	1 cut(s)	713
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	4 cut(s)	148, 502, 669, 739
BstMAI	GTCTC	2 cut(s)	125, 358
BstMBI	GATC	4 cut(s)	145, 499, 666, 736
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 59, 548, 653
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	2 cut(s)	328, 417
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	32, 538
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	4 cut(s)	145, 499, 666, 736
BstXI	CCANNNNNNTGG	3 cut(s)	425, 575, 625
BstYI	RGATCY	4 cut(s)	145, 499, 666, 736
Bsu36I	CCTNAGG	1 cut(s)	581
BsuRI	GGCC	2 cut(s)	579, 586
BtsCI	GGATG	1 cut(s)	713
BtsIMutI	CAGTG	1 cut(s)	724
BveI	ACCTGC	1 cut(s)	689
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	179, 701
Csp6I	GTAC	2 cut(s)	367, 455
CviAII	CATG	3 cut(s)	79, 469, 575
CviJI	RGCY	9 cut(s)	23, 166, 224, 314, 532, 542, 551, 579, 586
CviKI_1	RGCY	9 cut(s)	23, 166, 224, 314, 532, 542, 551, 579, 586
CviQI	GTAC	2 cut(s)	367, 455
DdeI	CTNAG	3 cut(s)	355, 394, 581
DinI	GGCGCC	1 cut(s)	326
DpnI	GATC	4 cut(s)	147, 501, 668, 738
DpnII	GATC	4 cut(s)	145, 499, 666, 736
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	586
Eco47I	GGWCC	2 cut(s)	179, 701
Eco57I	CTGAAG	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	326
EheI	GGCGCC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	82, 472, 578
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	78, 468, 574
Fnu4HI	GCNGC	2 cut(s)	21, 552
FokI	GGATG	1 cut(s)	700
Fsp4HI	GCNGC	2 cut(s)	21, 552
FspBI	CTAG	5 cut(s)	171, 183, 339, 515, 545
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	2 cut(s)	21, 552
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	2 cut(s)	579, 586
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	82, 472, 578
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	75, 379
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	377, 470
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	4 cut(s)	74, 130, 145, 358
Hpy188III	TCNNGA	1 cut(s)	740
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	714
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	100, 365
HpyCH4V	TGCA	7 cut(s)	20, 90, 155, 474, 574, 656, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 59, 548, 653
HpyF3I	CTNAG	3 cut(s)	355, 394, 581
HpySE526I	ACGT	2 cut(s)	100, 365
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	3 cut(s)	82, 472, 578
HspAI	GCGC	1 cut(s)	325
KasI	GGCGCC	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	145, 499, 666, 736
LmnI	GCTCC	2 cut(s)	297, 340
Lsp1109I	GCAGC	2 cut(s)	32, 538
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	5 cut(s)	171, 183, 339, 515, 545
MaeII	ACGT	2 cut(s)	100, 365
MaeIII	GTNAC	2 cut(s)	361, 410
MalI	GATC	4 cut(s)	147, 501, 668, 738
MboI	GATC	4 cut(s)	145, 499, 666, 736
MboII	GAAGA	4 cut(s)	6, 132, 242, 704
MflI	RGATCY	4 cut(s)	145, 499, 666, 736
MhlI	GDGCHC	2 cut(s)	49, 337
MluCI	AATT	1 cut(s)	724
Mly113I	GGCGCC	1 cut(s)	325
MmeI	TCCRAC	3 cut(s)	10, 52, 141
MnlI	CCTC	3 cut(s)	202, 352, 597
MseI	TTAA	2 cut(s)	399, 522
MslI	CAYNNNNRTG	3 cut(s)	237, 483, 573
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	330, 419
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	44, 59, 548, 653
NarI	GGCGCC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	4 cut(s)	145, 499, 666, 736
NlaIII	CATG	3 cut(s)	82, 472, 578
NlaIV	GGNNCC	2 cut(s)	326, 501
NspI	RCATGY	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	75, 379
PkrI	GCNGC	2 cut(s)	22, 553
PluTI	GGCGCC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	701
PsiI	TTATAA	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	326, 501
PspPI	GGNCC	2 cut(s)	179, 701
PspPPI	RGGWCCY	1 cut(s)	701
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	4 cut(s)	145, 499, 666, 736
RsaI	GTAC	2 cut(s)	368, 456
RsaNI	GTAC	2 cut(s)	367, 455
RseI	CAYNNNNRTG	3 cut(s)	237, 483, 573
SaqAI	TTAA	2 cut(s)	399, 522
SatI	GCNGC	2 cut(s)	21, 552
Sau3AI	GATC	4 cut(s)	145, 499, 666, 736
Sau96I	GGNCC	2 cut(s)	179, 701
ScrFI	CCNGG	2 cut(s)	330, 419
SduI	GDGCHC	2 cut(s)	49, 337
SfaNI	GCATC	1 cut(s)	649
SfcI	CTRYAG	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	326
SinI	GGWCC	2 cut(s)	179, 701
SmiMI	CAYNNNNRTG	3 cut(s)	237, 483, 573
Sse9I	AATT	1 cut(s)	724
SseBI	AGGCCT	1 cut(s)	586
SspDI	GGCGCC	1 cut(s)	324
SspMI	CTAG	5 cut(s)	171, 183, 339, 515, 545
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	2 cut(s)	328, 417
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	103, 368
TasI	AATT	1 cut(s)	724
TfiI	GAWTC	2 cut(s)	75, 379
Tru1I	TTAA	2 cut(s)	399, 522
Tru9I	TTAA	2 cut(s)	399, 522
TscAI	CASTG	1 cut(s)	724
TseI	GCWGC	2 cut(s)	20, 551
TspDTI	ATGAA	4 cut(s)	67, 255, 371, 631
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	724
VpaK11BI	GGWCC	2 cut(s)	179, 701
XceI	RCATGY	1 cut(s)	472
XspI	CTAG	5 cut(s)	171, 183, 339, 515, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.