Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005108

Physical Location & Seq

Genomic Coordinates Reverse (-)

25763773 .. 25764270

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1245800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATGAAGCAGCATTTCAGCTTTGTAAAGATCGAAAGCGATTTATTAAACAGGCTCTTGAGCAAAGAGGGCGATTCGCCTCTGGACACAGCATACATTCAGTCCTTAAAAAGAGTTTCAGCTGCTCTTCGTGATTATATCGAAGGAGATGAGCCTCGTGAGTTCTTATTAGATTCCTTCATAACCCCACCTTTCACACCCGTTAAGAAAGCGAGTCCTGGCTTAATCTCAATTTCACCAAAATCTTTCTCGCCTGCACCAAATATCCAATCCAAACCCCGTCCATGCGTGAAAATATGTTATCTAAGATCAGGAGGGAAACCAGCAGTTTCAGTAGAAGAGAGACCTGAATCACCCGAAACAGGCAGAGTTGAAGCTTACTCTCCAATGCACCATTATGGGATGGACGGGCTTTTTGGAATGCAATCTTCACCGATGAATTCTTCATCATTCTTCTCTTATTCTCCCAACAATAGGCCAAACATCCCTCCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

166

Amino Acids

18.32

Weight (kDa)

8.53

Isoelectric Point (pI)

81.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19090 AT4G30130 AT4G30130 AT4G30130 AT4G30130
fragaria_vesca	FvH4_4g07580 FvH4_4g07580 FvH4_4g07580 FvH4_4g07580 FvH4_4g07580
malus_domestica	MD00G1185400.v1.1 MD13G1245700.v1.1 MD13G1245800.v1.1
prunus_persica	Prupe.1G079100_v2.0.a1 Prupe.1G079100_v2.0.a1
pyrus_communis	pycom16g21390
rosa_chinensis	RchiOBHm_Chr4g0400181
rosa_laevigata	RLG00000009206
rosa_multiflora	Rmu_sc0000037.1_g000021 Rmu_sc0011138.1_g000003 Rmu_sc0035893.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345130
rosa_rugosa	Rorug04G0023200 Rorug04G0023300 Rorug04G0023400
rosa_samantha	Rh4AG098700 Rh4BG097000 Rh4CG108200 Rh4DG093700
rosa_wichuraiana	Rw4G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	362, 474
AgsI	TTSAA	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	3 cut(s)	21, 122, 377
AluI	AGCT	3 cut(s)	21, 122, 377
Alw26I	GTCTC	1 cut(s)	337
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	2 cut(s)	10, 122
ApoI	RAATTY	1 cut(s)	439
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
AsuHPI	GGTGA	3 cut(s)	228, 345, 423
BauI	CACGAG	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	22, 109
BccI	CCATC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	11, 123
BlsI	GCNGC	2 cut(s)	12, 124
Bme1390I	CCNGG	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 474
BseBI	CCWGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	408, 483
BseLI	CCNNNNNNNGG	2 cut(s)	362, 474
BseXI	GCAGC	2 cut(s)	22, 109
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	362, 474
BsmAI	GTCTC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	478
Bso31I	GGTCTC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	30, 308
BspANI	GGCC	1 cut(s)	478
BspQI	GCTCTTC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	337
BssMI	GATC	2 cut(s)	30, 308
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	219
Bst6I	CTCTTC	2 cut(s)	132, 333
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	305, 495
BstF5I	GGATG	2 cut(s)	408, 483
BstKTI	GATC	2 cut(s)	33, 311
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	2 cut(s)	30, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	22, 109
BsuRI	GGCC	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	408, 483
Cac8I	GCNNGC	1 cut(s)	255
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	8 cut(s)	21, 55, 122, 154, 222, 377, 412, 478
CviKI_1	RGCY	8 cut(s)	21, 55, 122, 154, 222, 377, 412, 478
DdeI	CTNAG	2 cut(s)	305, 495
DpnI	GATC	2 cut(s)	32, 310
DpnII	GATC	2 cut(s)	30, 308
Eam1104I	CTCTTC	2 cut(s)	132, 333
EarI	CTCTTC	2 cut(s)	132, 333
Eco31I	GGTCTC	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	217
FaeI	CATG	1 cut(s)	288
FaiI	YATR	6 cut(s)	94, 138, 182, 286, 298, 399
FatI	CATG	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	11, 123
FokI	GGATG	2 cut(s)	415, 470
Fsp4HI	GCNGC	2 cut(s)	11, 123
GluI	GCNGC	2 cut(s)	11, 123
HaeIII	GGCC	1 cut(s)	478
Hin1II	CATG	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	4 cut(s)	74, 173, 214, 350
HphI	GGTGA	3 cut(s)	228, 345, 423
Hpy188III	TCNNGA	5 cut(s)	58, 83, 131, 158, 312
HpyAV	CCTTC	2 cut(s)	137, 187
HpyCH4V	TGCA	3 cut(s)	257, 391, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	2 cut(s)	305, 495
Hsp92II	CATG	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	30, 308
LguI	GCTCTTC	1 cut(s)	132
LpnPI	CCDG	9 cut(s)	37, 68, 204, 231, 267, 297, 336, 348, 360
Lsp1109I	GCAGC	2 cut(s)	22, 109
MalI	GATC	2 cut(s)	32, 310
MboI	GATC	2 cut(s)	30, 308
MboII	GAAGA	5 cut(s)	119, 350, 420, 435, 445
MluCI	AATT	2 cut(s)	231, 439
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	61, 90, 165, 308, 498
MseI	TTAA	4 cut(s)	47, 107, 204, 224
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	30, 308
NlaIII	CATG	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	132
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	74, 173, 350
PkrI	GCNGC	2 cut(s)	12, 124
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	47, 107, 204, 224
SatI	GCNGC	2 cut(s)	11, 123
Sau3AI	GATC	2 cut(s)	30, 308
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	6 cut(s)	23, 124, 193, 349, 379, 496
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	2 cut(s)	231, 439
StyD4I	CCNGG	1 cut(s)	217
TaqI	TCGA	2 cut(s)	33, 141
TasI	AATT	2 cut(s)	231, 439
TfiI	GAWTC	3 cut(s)	74, 173, 350
Tru1I	TTAA	4 cut(s)	47, 107, 204, 224
Tru9I	TTAA	4 cut(s)	47, 107, 204, 224
TseI	GCWGC	2 cut(s)	10, 122
TspDTI	ATGAA	4 cut(s)	20, 169, 435, 452
XapI	RAATTY	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.