Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005108

Physical Location & Seq

Genomic Coordinates Reverse (-)

3329472 .. 3330536

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0023200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATTACTGGAGACAATGTTTTCACCGCAAAAGCTATAGCCACTGAATGTGGGATACTCAGGCCTGGTCAGGACATGCTCGGAGCAGTGATAGAAGGTGTCGAATTTCGCAACTACACGCCAGAAGACAGAATGGAGAAAGTTGAGAAAATTGCTGTGATGGCAAGGTCTTCTCCGTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACCGGTGATGGCACCAATGATGCACCAGCACTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCGATAGTTTTGATGTGGGGAAGATGCGTGTACAATAATATCCAGAAGTTCATCCAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGCGGCAGTTTCAGCAGGTCAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTCAACTTGATCATGGACACACTTGGAGCTCTTGCTCTTGCCACAGAAAAACCGACAAGAGAACTTATGGAGAAGCCACCAGTGGGAAGGACGGCACCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGTATCAAATAACAGTCCTATTGATCTTACAATTCAGGGGCAAAGCAATCTTTGGTGTCAGTGATAAGGTAAAGGACACATTGATTTTCAACACTTTTGTGCTTTGCCAGGTGTTCAATGAGTTCAATGCGAGGAAGCTAGAGAAGAAGAATGTGTTCAAGGGAATACATACCAATAAGTTGTTCATGGGGATCATTGCAGTGACAATTGTTCTTCAGGTCGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATAGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAGTCAAGTCTATACCTGTTCCAGAGAAACCCATTTTCAGCTATCTGAAGATGAAGAATAATAAGCACCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

354

Amino Acids

39.26

Weight (kDa)

9.08

Isoelectric Point (pI)

22.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	1 - 93	3.7e-06	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	164 - 333	2.4e-49	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19090 AT4G30130 AT4G30130 AT4G30130 AT4G30130
fragaria_vesca	FvH4_4g07580 FvH4_4g07580 FvH4_4g07580 FvH4_4g07580 FvH4_4g07580
malus_domestica	MD00G1185400.v1.1 MD13G1245700.v1.1 MD13G1245800.v1.1
prunus_persica	Prupe.1G079100_v2.0.a1 Prupe.1G079100_v2.0.a1
pyrus_communis	pycom16g21390
rosa_chinensis	RchiOBHm_Chr4g0400181
rosa_laevigata	RLG00000009206
rosa_multiflora	Rmu_sc0000037.1_g000021 Rmu_sc0011138.1_g000003 Rmu_sc0035893.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345130
rosa_rugosa	Rorug04G0023200 Rorug04G0023300 Rorug04G0023400
rosa_samantha	Rh4AG098700 Rh4BG097000 Rh4CG108200 Rh4DG093700
rosa_wichuraiana	Rw4G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
AccB1I	GGYRCC	2 cut(s)	245, 613
AciI	CCGC	2 cut(s)	27, 470
AclWI	GGATC	1 cut(s)	860
AcoI	YGGCCR	1 cut(s)	974
AcsI	RAATTY	2 cut(s)	104, 905
AcuI	CTGAAG	3 cut(s)	345, 860, 1055
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	7 cut(s)	208, 302, 751, 778, 787, 820, 928
AjnI	CCWGG	2 cut(s)	64, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	827, 859
AleI	CACNNNNGTG	1 cut(s)	758
AluBI	AGCT	8 cut(s)	35, 187, 275, 327, 449, 548, 799, 1029
AluI	AGCT	8 cut(s)	35, 187, 275, 327, 449, 548, 799, 1029
Alw21I	GWGCWC	2 cut(s)	329, 550
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	860
AoxI	GGCC	2 cut(s)	62, 974
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	104, 905
AsiGI	ACCGGT	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	815
AsuHPI	GGTGA	3 cut(s)	16, 251, 424
BalI	TGGCCA	1 cut(s)	976
BanI	GGYRCC	2 cut(s)	245, 613
BanII	GRGCYC	2 cut(s)	329, 550
BbsI	GAAGAC	2 cut(s)	132, 162
Bbv12I	GWGCWC	2 cut(s)	329, 550
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	3 cut(s)	154, 236, 880
BceAI	ACGGC	1 cut(s)	627
BciT130I	CCWGG	2 cut(s)	66, 770
BciVI	GTATCC	1 cut(s)	48
BclI	TGATCA	3 cut(s)	339, 456, 528
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	2 cut(s)	800, 989
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	48
BisI	GCNGC	2 cut(s)	447, 471
BlsI	GCNGC	2 cut(s)	448, 472
Bme1390I	CCNGG	2 cut(s)	66, 770
BmiI	GGNNCC	3 cut(s)	247, 615, 644
BmrFI	CCNGG	2 cut(s)	66, 770
BmsI	GCATC	2 cut(s)	244, 380
BpiI	GAAGAC	2 cut(s)	132, 162
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	639, 884
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	13, 599
Bse3DI	GCAATG	2 cut(s)	206, 855
BseBI	CCWGG	2 cut(s)	66, 770
BseGI	GGATG	2 cut(s)	352, 417
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	2 cut(s)	206, 855
BseMII	CTCAG	2 cut(s)	73, 342
BseNI	ACTGG	2 cut(s)	13, 599
BseXI	GCAGC	1 cut(s)	458
BshFI	GGCC	2 cut(s)	64, 976
BshNI	GGYRCC	2 cut(s)	245, 613
BshTI	ACCGGT	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	329, 550
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	476, 948
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	6
BsmFI	GGGAC	2 cut(s)	476, 948
BsnI	GGCC	2 cut(s)	64, 976
Bsp1286I	GDGCHC	2 cut(s)	329, 550
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	5 cut(s)	339, 456, 528, 684, 852
BspACI	CCGC	2 cut(s)	27, 470
BspANI	GGCC	2 cut(s)	64, 976
BspCNI	CTCAG	2 cut(s)	72, 341
BspLI	GGNNCC	3 cut(s)	247, 615, 644
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	1 cut(s)	860
BspT107I	GGYRCC	2 cut(s)	245, 613
BsrDI	GCAATG	2 cut(s)	206, 855
BsrFI	RCCGGY	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	13, 599
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	5 cut(s)	339, 456, 528, 684, 852
Bst2UI	CCWGG	2 cut(s)	66, 770
Bst4CI	ACNGT	3 cut(s)	436, 663, 676
BstAUI	TGTACA	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	59, 328
BstF5I	GGATG	2 cut(s)	352, 417
BstKTI	GATC	5 cut(s)	342, 459, 531, 687, 855
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	5 cut(s)	339, 456, 528, 684, 852
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 365, 479
BstNI	CCWGG	2 cut(s)	66, 770
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	64, 768
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	2 cut(s)	132, 162
BstXI	CCANNNNNNTGG	1 cut(s)	984
BsuI	GTATCC	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	64, 976
BtsCI	GGATG	2 cut(s)	352, 417
BtsI	GCAGTG	3 cut(s)	93, 237, 867
BtsIMutI	CAGTG	8 cut(s)	42, 93, 237, 263, 606, 659, 727, 867
BveI	ACCTGC	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	6 cut(s)	76, 221, 343, 532, 634, 847
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	59, 328
DpnI	GATC	5 cut(s)	341, 458, 530, 686, 854
DpnII	GATC	5 cut(s)	339, 456, 528, 684, 852
EaeI	YGGCCR	1 cut(s)	974
Ecl136II	GAGCTC	2 cut(s)	327, 548
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	2 cut(s)	329, 550
Eco53kI	GAGCTC	2 cut(s)	327, 548
Eco57I	CTGAAG	3 cut(s)	345, 860, 1055
EcoICRI	GAGCTC	2 cut(s)	327, 548
EcoRII	CCWGG	2 cut(s)	64, 768
EcoT22I	ATGCAT	1 cut(s)	953
EcoT38I	GRGCYC	2 cut(s)	329, 550
FaeI	CATG	6 cut(s)	79, 224, 346, 535, 637, 850
FaqI	GGGAC	2 cut(s)	476, 948
FatI	CATG	6 cut(s)	75, 220, 342, 531, 633, 846
FbaI	TGATCA	3 cut(s)	339, 456, 528
Fnu4HI	GCNGC	2 cut(s)	447, 471
FokI	GGATG	2 cut(s)	359, 404
FriOI	GRGCYC	2 cut(s)	329, 550
Fsp4HI	GCNGC	2 cut(s)	447, 471
FspBI	CTAG	2 cut(s)	800, 989
GluI	GCNGC	2 cut(s)	447, 471
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	64, 976
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	6 cut(s)	79, 224, 346, 535, 637, 850
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	3 cut(s)	16, 251, 424
Hpy166II	GTNNAC	2 cut(s)	397, 523
Hpy188I	TCNGA	3 cut(s)	83, 331, 1035
Hpy188III	TCNNGA	5 cut(s)	71, 409, 883, 901, 1010
Hpy8I	GTNNAC	2 cut(s)	397, 523
HpyAV	CCTTC	2 cut(s)	89, 600
HpyCH4III	ACNGT	3 cut(s)	436, 663, 676
HpyCH4V	TGCA	8 cut(s)	199, 230, 257, 446, 860, 911, 951, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 365, 479
HpyF3I	CTNAG	2 cut(s)	59, 328
Hsp92II	CATG	6 cut(s)	79, 224, 346, 535, 637, 850
Ksp22I	TGATCA	3 cut(s)	339, 456, 528
Kzo9I	GATC	5 cut(s)	339, 456, 528, 684, 852
LmnI	GCTCC	2 cut(s)	83, 545
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	2 cut(s)	244, 380
MaeI	CTAG	2 cut(s)	800, 989
MaeIII	GTNAC	2 cut(s)	232, 862
MalI	GATC	5 cut(s)	341, 458, 530, 686, 854
MboI	GATC	5 cut(s)	339, 456, 528, 684, 852
MboII	GAAGA	8 cut(s)	137, 162, 399, 817, 820, 866, 1048, 1054
MfeI	CAATTG	2 cut(s)	867, 978
MhlI	GDGCHC	2 cut(s)	329, 550
MlsI	TGGCCA	1 cut(s)	976
MluCI	AATT	8 cut(s)	104, 150, 422, 692, 867, 905, 928, 978
MluNI	TGGCCA	1 cut(s)	976
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	7 cut(s)	627, 633, 656, 663, 786, 886, 915
Mox20I	TGGCCA	1 cut(s)	976
Mph1103I	ATGCAT	1 cut(s)	953
MroXI	GAANNNNTTC	1 cut(s)	815
MscI	TGGCCA	1 cut(s)	976
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	2 cut(s)	758, 860
Msp20I	TGGCCA	1 cut(s)	976
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	66, 770
MunI	CAATTG	2 cut(s)	867, 978
MvaI	CCWGG	2 cut(s)	66, 770
MwoI	GCNNNNNNNGC	3 cut(s)	161, 365, 479
NdeII	GATC	5 cut(s)	339, 456, 528, 684, 852
NlaIII	CATG	6 cut(s)	79, 224, 346, 535, 637, 850
NlaIV	GGNNCC	3 cut(s)	247, 615, 644
NmuCI	GTSAC	2 cut(s)	232, 862
NsiI	ATGCAT	1 cut(s)	953
NspI	RCATGY	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	758
PceI	AGGCCT	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	815
PfeI	GAWTC	1 cut(s)	298
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	448, 472
Psp124BI	GAGCTC	2 cut(s)	329, 550
Psp6I	CCWGG	2 cut(s)	64, 768
PspGI	CCWGG	2 cut(s)	64, 768
PspN4I	GGNNCC	3 cut(s)	247, 615, 644
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	2 cut(s)	758, 860
SacI	GAGCTC	2 cut(s)	329, 550
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	2 cut(s)	447, 471
Sau3AI	GATC	5 cut(s)	339, 456, 528, 684, 852
ScrFI	CCNGG	2 cut(s)	66, 770
SduI	GDGCHC	2 cut(s)	329, 550
SfaNI	GCATC	2 cut(s)	244, 380
SfcI	CTRYAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	2 cut(s)	758, 860
SmlI	CTYRAG	2 cut(s)	654, 899
SmoI	CTYRAG	2 cut(s)	654, 899
Sse9I	AATT	8 cut(s)	104, 150, 422, 692, 867, 905, 928, 978
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	2 cut(s)	27, 470
SspMI	CTAG	2 cut(s)	800, 989
SstI	GAGCTC	2 cut(s)	329, 550
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	64, 768
TaaI	ACNGT	3 cut(s)	436, 663, 676
TaqI	TCGA	1 cut(s)	102
TasI	AATT	8 cut(s)	104, 150, 422, 692, 867, 905, 928, 978
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	8 cut(s)	49, 93, 237, 270, 606, 666, 727, 867
TseFI	GTSAC	2 cut(s)	232, 862
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	2 cut(s)	232, 862
TspDTI	ATGAA	3 cut(s)	406, 835, 1055
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	8 cut(s)	49, 93, 237, 270, 606, 666, 727, 867
XapI	RAATTY	2 cut(s)	104, 905
XceI	RCATGY	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	815
XspI	CTAG	2 cut(s)	800, 989
Zsp2I	ATGCAT	1 cut(s)	953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.