Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000037.1

Orthogroup ID

OG0005108

Physical Location & Seq

Genomic Coordinates Forward (+)

130749 .. 132147

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000037.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgaaaatgctgaacccagtagctttatttcgctcagcatcctcgtctcgctcagcctcatccagatttttagtgacttcttcctgctccaaagatgaaggttatgaaagcagcagtgacttctcagaggagccctgcatgttttcaggtagtcaccaatcaacattggacagattgtatgcttgggagaagaaactctatgaggaagtcaagtctggagaaaaggttcggatgacatatgacaagaaattaaagcaactccggaaccaagatgtaaaaggctatgaccaatctgctctagaaaaaacaagggtatccattagagatctgcatacgcagatgaaggtttcgatacactcagttgaagctatttcaaagagaattgaaaccttaagggatgaagaactgcagcctcaactttcagaattggtgcaagggttggcaaggatgtggaaagtaatggcagagtgtcatcagacacagaaacgaagcctcgatgaagccaagcttctactagcaggcacaccttcaaaactgcaagctaaaaggctttcttcttccagttcagttactgatccaaaccagctagcacgttctgcagccaatcttgagaccgaactgaggaattggagagcctatttcgagtcatggatcacttctcagcgatcctacgtacacgcattgacaggatggcttctccgttgcatgagggctgatccagatgcatcaaagttgcctctctctcctcgtcgctcttacagtgctcctccaatatttggaatatgcatccaatggtcaaggtttctagatgccatacgtgagaccccagtgctagatggactagattttttcgcagctggtatgggatctctctatgcacagcaggttaaagaggatttacgtagagctcggataggttcaaagaggttcgagtcaactgaggaattcagtgggaatatggaactggtggaagttggccaagttgaacaagtaatgactgcagataaaatggctgaagttgccataagggtactttgtgctggaatgtcagttactatgagctcactgacagagttttctattgcttctgctgaggggtatgctgatcttgtgaatcaatgggacgatgccaagactagagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

381

Amino Acids

43.0

Weight (kDa)

8.11

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19090 AT4G30130 AT4G30130 AT4G30130 AT4G30130
fragaria_vesca	FvH4_4g07580 FvH4_4g07580 FvH4_4g07580 FvH4_4g07580 FvH4_4g07580
malus_domestica	MD00G1185400.v1.1 MD13G1245700.v1.1 MD13G1245800.v1.1
prunus_persica	Prupe.1G079100_v2.0.a1 Prupe.1G079100_v2.0.a1
pyrus_communis	pycom16g21390
rosa_chinensis	RchiOBHm_Chr4g0400181
rosa_laevigata	RLG00000009206
rosa_multiflora	Rmu_sc0000037.1_g000021 Rmu_sc0011138.1_g000003 Rmu_sc0035893.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345130
rosa_rugosa	Rorug04G0023200 Rorug04G0023300 Rorug04G0023400
rosa_samantha	Rh4AG098700 Rh4BG097000 Rh4CG108200 Rh4DG093700
rosa_wichuraiana	Rw4G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	874
AccB7I	CCANNNNNTGG	1 cut(s)	776
AccIII	TCCGGA	1 cut(s)	261
AclWI	GGATC	5 cut(s)	569, 659, 660, 710, 874
AcoI	YGGCCR	1 cut(s)	976
AcsI	RAATTY	1 cut(s)	944
AcuI	CTGAAG	1 cut(s)	1035
AfaI	GTAC	2 cut(s)	675, 1032
AfiI	CCNNNNNNNGG	2 cut(s)	621, 776
AflII	CTTAAG	1 cut(s)	391
AgsI	TTSAA	6 cut(s)	365, 375, 386, 531, 921, 986
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	9 cut(s)	23, 368, 508, 542, 586, 857, 908, 1062, 1142
AluI	AGCT	9 cut(s)	23, 368, 508, 542, 586, 857, 908, 1062, 1142
Alw21I	GWGCWC	3 cut(s)	766, 910, 1064
Alw26I	GTCTC	3 cut(s)	51, 605, 815
AlwI	GGATC	5 cut(s)	569, 659, 660, 710, 874
AlwNI	CAGNNNCTG	1 cut(s)	572
Aor13HI	TCCGGA	1 cut(s)	261
AoxI	GGCC	1 cut(s)	976
ApeKI	GCWGC	4 cut(s)	111, 409, 599, 854
ApoI	RAATTY	1 cut(s)	944
Asp700I	GAANNNNTTC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	146
AsuNHI	GCTAGC	1 cut(s)	586
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BalI	TGGCCA	1 cut(s)	978
BanII	GRGCYC	3 cut(s)	135, 910, 1064
Bbv12I	GWGCWC	3 cut(s)	766, 910, 1064
BbvCI	CCTCAGC	1 cut(s)	1092
BbvI	GCAGC	4 cut(s)	123, 421, 611, 866
BccI	CCATC	2 cut(s)	684, 830
BciVI	GTATCC	1 cut(s)	325
BcoDI	GTCTC	3 cut(s)	51, 605, 815
BfaI	CTAG	7 cut(s)	299, 515, 587, 806, 833, 842, 1137
BfmI	CTRYAG	3 cut(s)	407, 597, 999
BfrI	CTTAAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	874
BfuI	GTATCC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	4 cut(s)	112, 410, 600, 855
BlpI	GCTNAGC	2 cut(s)	34, 52
BlsI	GCNGC	4 cut(s)	113, 411, 601, 856
BmiI	GGNNCC	2 cut(s)	132, 266
BmrI	ACTGGG	2 cut(s)	11, 821
BmsI	GCATC	6 cut(s)	47, 712, 734, 795, 799, 1117
BmtI	GCTAGC	1 cut(s)	590
BmuI	ACTGGG	2 cut(s)	11, 821
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	1092
Bpu1102I	GCTNAGC	2 cut(s)	34, 52
BpuEI	CTTGAG	1 cut(s)	629
BsaAI	YACGTR	3 cut(s)	673, 818, 902
BsaI	GGTCTC	2 cut(s)	605, 815
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	621, 776
Bse1I	ACTGG	4 cut(s)	17, 561, 827, 969
BseAI	TCCGGA	1 cut(s)	261
BseGI	GGATG	7 cut(s)	38, 59, 237, 403, 453, 695, 786
BseLI	CCNNNNNNNGG	2 cut(s)	621, 776
BseMII	CTCAG	8 cut(s)	48, 66, 138, 372, 611, 674, 930, 1083
BseNI	ACTGG	4 cut(s)	17, 561, 827, 969
BseRI	GAGGAG	3 cut(s)	143, 735, 756
BseXI	GCAGC	4 cut(s)	123, 421, 611, 866
BshFI	GGCC	1 cut(s)	978
BsiHKAI	GWGCWC	3 cut(s)	766, 910, 1064
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	1136
BslI	CCNNNNNNNGG	2 cut(s)	621, 776
BsmAI	GTCTC	3 cut(s)	51, 605, 815
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	1136
BsnI	GGCC	1 cut(s)	978
Bso31I	GGTCTC	2 cut(s)	605, 815
Bsp1286I	GDGCHC	4 cut(s)	135, 766, 910, 1064
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	7 cut(s)	325, 574, 651, 665, 715, 866, 1105
Bsp1720I	GCTNAGC	2 cut(s)	34, 52
BspANI	GGCC	1 cut(s)	978
BspCNI	CTCAG	8 cut(s)	47, 65, 137, 371, 612, 673, 931, 1084
BspEI	TCCGGA	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	132, 266
BspMAI	CTGCAG	3 cut(s)	411, 601, 1003
BspMI	ACCTGC	1 cut(s)	874
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	5 cut(s)	569, 659, 660, 710, 874
BspTI	CTTAAG	1 cut(s)	391
BspTNI	GGTCTC	2 cut(s)	605, 815
BsrI	ACTGG	4 cut(s)	17, 561, 827, 969
BssMI	GATC	7 cut(s)	325, 574, 651, 665, 715, 866, 1105
Bst4CI	ACNGT	1 cut(s)	761
BstAFI	CTTAAG	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstBAI	YACGTR	3 cut(s)	673, 818, 902
BstC8I	GCNNGC	3 cut(s)	520, 540, 588
BstDEI	CTNAG	8 cut(s)	34, 52, 124, 358, 620, 660, 939, 1092
BstF5I	GGATG	7 cut(s)	38, 59, 237, 403, 453, 695, 786
BstKTI	GATC	7 cut(s)	328, 577, 654, 668, 718, 869, 1108
BstMAI	GTCTC	3 cut(s)	51, 605, 815
BstMBI	GATC	7 cut(s)	325, 574, 651, 665, 715, 866, 1105
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 1019
BstNSI	RCATGY	1 cut(s)	142
BstSFI	CTRYAG	3 cut(s)	407, 597, 999
BstSNI	TACGTA	2 cut(s)	673, 902
BstV1I	GCAGC	4 cut(s)	123, 421, 611, 866
BstX2I	RGATCY	2 cut(s)	325, 866
BstYI	RGATCY	2 cut(s)	325, 866
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	978
BtsCI	GGATG	7 cut(s)	38, 59, 237, 403, 453, 695, 786
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	5 cut(s)	121, 766, 834, 955, 1064
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	3 cut(s)	520, 540, 588
CaiI	CAGNNNCTG	1 cut(s)	572
Csp6I	GTAC	2 cut(s)	674, 1031
CviAII	CATG	3 cut(s)	139, 648, 706
CviQI	GTAC	2 cut(s)	674, 1031
DdeI	CTNAG	8 cut(s)	34, 52, 124, 358, 620, 660, 939, 1092
DpnI	GATC	7 cut(s)	327, 576, 653, 667, 717, 868, 1107
DpnII	GATC	7 cut(s)	325, 574, 651, 665, 715, 866, 1105
EaeI	YGGCCR	1 cut(s)	976
Ecl136II	GAGCTC	2 cut(s)	908, 1062
Eco105I	TACGTA	2 cut(s)	673, 902
Eco24I	GRGCYC	3 cut(s)	135, 910, 1064
Eco31I	GGTCTC	2 cut(s)	605, 815
Eco53kI	GAGCTC	2 cut(s)	908, 1062
Eco57I	CTGAAG	1 cut(s)	1035
EcoICRI	GAGCTC	2 cut(s)	908, 1062
EcoRI	GAATTC	1 cut(s)	944
EcoT22I	ATGCAT	2 cut(s)	727, 788
EcoT38I	GRGCYC	3 cut(s)	135, 910, 1064
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	3 cut(s)	142, 651, 709
FalI	AAGNNNNNCTT	4 cut(s)	492, 524, 538, 570
FaqI	GGGAC	1 cut(s)	1136
FatI	CATG	3 cut(s)	138, 647, 705
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	4 cut(s)	112, 410, 600, 855
FokI	GGATG	7 cut(s)	25, 46, 244, 410, 460, 702, 773
FriOI	GRGCYC	3 cut(s)	135, 910, 1064
Fsp4HI	GCNGC	4 cut(s)	112, 410, 600, 855
FspBI	CTAG	7 cut(s)	299, 515, 587, 806, 833, 842, 1137
GluI	GCNGC	4 cut(s)	112, 410, 600, 855
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	978
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	3 cut(s)	142, 651, 709
HincII	GTYRAC	1 cut(s)	936
HindII	GTYRAC	1 cut(s)	936
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	3 cut(s)	644, 932, 1114
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	676, 936
Hpy188I	TCNGA	5 cut(s)	127, 231, 424, 477, 912
Hpy188III	TCNNGA	7 cut(s)	63, 216, 262, 299, 608, 719, 806
Hpy8I	GTNNAC	2 cut(s)	676, 936
Hpy99I	CGWCG	1 cut(s)	753
HpyAV	CCTTC	3 cut(s)	92, 337, 537
HpyCH4III	ACNGT	1 cut(s)	761
HpyCH4IV	ACGT	4 cut(s)	592, 672, 817, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 1019
HpyF3I	CTNAG	8 cut(s)	34, 52, 124, 358, 620, 660, 939, 1092
HpySE526I	ACGT	4 cut(s)	592, 672, 817, 901
Hsp92II	CATG	3 cut(s)	142, 651, 709
Kpn2I	TCCGGA	1 cut(s)	261
Kzo9I	GATC	7 cut(s)	325, 574, 651, 665, 715, 866, 1105
LmnI	GCTCC	3 cut(s)	92, 130, 769
Lsp1109I	GCAGC	4 cut(s)	123, 421, 611, 866
LweI	GCATC	6 cut(s)	47, 712, 734, 795, 799, 1117
MaeI	CTAG	7 cut(s)	299, 515, 587, 806, 833, 842, 1137
MaeII	ACGT	4 cut(s)	592, 672, 817, 901
MaeIII	GTNAC	5 cut(s)	73, 116, 152, 568, 1051
MalI	GATC	7 cut(s)	327, 576, 653, 667, 717, 868, 1107
MboI	GATC	7 cut(s)	325, 574, 651, 665, 715, 866, 1105
MboII	GAAGA	5 cut(s)	72, 202, 413, 546, 549
MflI	RGATCY	2 cut(s)	325, 866
MhlI	GDGCHC	4 cut(s)	135, 766, 910, 1064
MlsI	TGGCCA	1 cut(s)	978
MluCI	AATT	5 cut(s)	248, 381, 425, 625, 944
MluNI	TGGCCA	1 cut(s)	978
MlyI	GAGTC	2 cut(s)	653, 941
Mox20I	TGGCCA	1 cut(s)	978
Mph1103I	ATGCAT	2 cut(s)	727, 788
MroI	TCCGGA	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	978
MseI	TTAA	3 cut(s)	251, 392, 888
Msp20I	TGGCCA	1 cut(s)	978
MspA1I	CMGCKG	1 cut(s)	857
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	596, 1019
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	7 cut(s)	325, 574, 651, 665, 715, 866, 1105
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	3 cut(s)	142, 651, 709
NlaIV	GGNNCC	2 cut(s)	132, 266
NmuCI	GTSAC	3 cut(s)	73, 116, 152
NsiI	ATGCAT	2 cut(s)	727, 788
NspI	RCATGY	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	1114
PflMI	CCANNNNNTGG	1 cut(s)	776
PkrI	GCNGC	4 cut(s)	113, 411, 601, 856
PleI	GAGTC	2 cut(s)	652, 940
PpsI	GAGTC	2 cut(s)	652, 940
Ppu21I	YACGTR	3 cut(s)	673, 818, 902
Psp124BI	GAGCTC	2 cut(s)	910, 1064
PspN4I	GGNNCC	2 cut(s)	132, 266
PstI	CTGCAG	3 cut(s)	411, 601, 1003
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	325, 866
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	2 cut(s)	675, 1032
RsaNI	GTAC	2 cut(s)	674, 1031
SacI	GAGCTC	2 cut(s)	910, 1064
SaqAI	TTAA	3 cut(s)	251, 392, 888
SatI	GCNGC	4 cut(s)	112, 410, 600, 855
Sau3AI	GATC	7 cut(s)	325, 574, 651, 665, 715, 866, 1105
SchI	GAGTC	2 cut(s)	653, 941
SduI	GDGCHC	4 cut(s)	135, 766, 910, 1064
SfaNI	GCATC	6 cut(s)	47, 712, 734, 795, 799, 1117
SfcI	CTRYAG	3 cut(s)	407, 597, 999
SmlI	CTYRAG	2 cut(s)	391, 608
SmoI	CTYRAG	2 cut(s)	391, 608
SnaBI	TACGTA	2 cut(s)	673, 902
Sse9I	AATT	5 cut(s)	248, 381, 425, 625, 944
SspI	AATATT	1 cut(s)	774
SspMI	CTAG	7 cut(s)	299, 515, 587, 806, 833, 842, 1137
SstI	GAGCTC	2 cut(s)	910, 1064
TaaI	ACNGT	1 cut(s)	761
TaiI	ACGT	4 cut(s)	595, 675, 820, 904
TaqI	TCGA	4 cut(s)	350, 495, 642, 930
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	5 cut(s)	248, 381, 425, 625, 944
TfiI	GAWTC	1 cut(s)	1114
Tru1I	TTAA	3 cut(s)	251, 392, 888
Tru9I	TTAA	3 cut(s)	251, 392, 888
TscAI	CASTG	5 cut(s)	121, 766, 834, 955, 1071
TseFI	GTSAC	3 cut(s)	73, 116, 152
TseI	GCWGC	4 cut(s)	111, 409, 599, 854
Tsp45I	GTSAC	3 cut(s)	73, 116, 152
TspDTI	ATGAA	6 cut(s)	17, 111, 120, 356, 414, 513
TspGWI	ACGGA	1 cut(s)	689
TspRI	CASTG	5 cut(s)	121, 766, 834, 955, 1071
Van91I	CCANNNNNTGG	1 cut(s)	776
Vha464I	CTTAAG	1 cut(s)	391
XapI	RAATTY	1 cut(s)	944
XbaI	TCTAGA	2 cut(s)	298, 805
XceI	RCATGY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	7 cut(s)	299, 515, 587, 806, 833, 842, 1137
Zsp2I	ATGCAT	2 cut(s)	727, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.