Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0017371

Physical Location & Seq

Genomic Coordinates Forward (+)

26477942 .. 26478546

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1248900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAAGGTACTCTCTTTCCATCTCTACCTGTATATCCCATCCCAGCAAACAGACCAACGCAGCCAAACCCTCCTGTGAAATTCAACTCAACGACGCTGCCACCGCCTCCTCAGTCGCGAGCTCCGCCGTTTCCTATAGACTCTCTCCTGCAGCACCTTCTGAGCCTCTCCTCGCCTCCCAACACTCCCCACAAGCTCAAGCCTTTAAACCCACCTCACCAAACCAATGGCAGTCTCCTTTCTCTTCAAATTTCGGTGGATTCGACCTCCAAACAGCATCAAATGAAGAAACCCACCTCAGTTTTGGCCCCAAATTTTGAGGACGATCGAGGGCTGGTGGAATCGGATATGTATGAAGGAGCAAAGACTACCGTAAGAACTCATGAAGGACAAACCGAAAGCTTTCCCATAACTGTAGGATTACATCAAGGCTCATCCTTAAGTCCTTACCTTTTTGCGTTGGTAATGGATGAGTTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

161

Amino Acids

17.48

Weight (kDa)

6.27

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017371)

Species	Orthologous Gene IDs
malus_domestica	MD10G1119300.v1.1 MD13G1248900.v1.1 MD15G1256000.v1.1
pyrus_communis	pycom01g03110 pycom01g03550 pycom01g13430 pycom02g18720 pycom06g08950 pycom12g15660 pycom13g18260 pycom13g26750 pycom15g29290 pycom16g21160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	118
AciI	CCGC	2 cut(s)	104, 125
AcsI	RAATTY	3 cut(s)	80, 249, 313
AfaI	GTAC	1 cut(s)	10
AflII	CTTAAG	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	85, 248
AluBI	AGCT	3 cut(s)	122, 196, 402
AluI	AGCT	3 cut(s)	122, 196, 402
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	3 cut(s)	61, 97, 151
ApoI	RAATTY	3 cut(s)	80, 249, 313
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	3 cut(s)	73, 84, 163
BccI	CCATC	2 cut(s)	28, 47
BceAI	ACGGC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	239
BfmI	CTRYAG	3 cut(s)	135, 149, 414
BfrI	CTTAAG	1 cut(s)	439
BisI	GCNGC	3 cut(s)	62, 98, 152
BlsI	GCNGC	3 cut(s)	63, 99, 153
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	182
BseGI	GGATG	3 cut(s)	39, 434, 475
BseMII	CTCAG	3 cut(s)	125, 152, 312
BseRI	GAGGAG	2 cut(s)	99, 160
BseXI	GCAGC	3 cut(s)	73, 84, 163
BseYI	CCCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	118
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	325
Bsp68I	TCGCGA	1 cut(s)	118
BspACI	CCGC	2 cut(s)	104, 125
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	3 cut(s)	124, 153, 311
BspFNI	CGCG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	153
BspTI	CTTAAG	1 cut(s)	439
BssMI	GATC	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	373, 415
Bst6I	CTCTTC	1 cut(s)	249
BstAFI	CTTAAG	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	111, 161, 298
BstF5I	GGATG	3 cut(s)	39, 434, 475
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	325
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 124
BstSFI	CTRYAG	3 cut(s)	135, 149, 414
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	73, 84, 163
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	39, 434, 475
BtuMI	TCGCGA	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	120
CciI	TCATGA	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	307
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	2 cut(s)	383, 480
CviJI	RGCY	9 cut(s)	64, 122, 165, 196, 202, 308, 334, 402, 432
CviKI_1	RGCY	9 cut(s)	64, 122, 165, 196, 202, 308, 334, 402, 432
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	3 cut(s)	111, 161, 298
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DraI	TTTAAA	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	2 cut(s)	386, 483
FaiI	YATR	7 cut(s)	34, 137, 350, 354, 384, 410, 481
FatI	CATG	2 cut(s)	382, 479
Fnu4HI	GCNGC	3 cut(s)	62, 98, 152
FokI	GGATG	2 cut(s)	26, 421
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	62, 98, 152
GluI	GCNGC	3 cut(s)	62, 98, 152
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	308
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	386, 483
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	3 cut(s)	140, 260, 341
HpaI	GTTAAC	1 cut(s)	477
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	2 cut(s)	162, 346
Hpy188III	TCNNGA	2 cut(s)	117, 383
Hpy8I	GTNNAC	1 cut(s)	477
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	167, 350, 380
HpyCH4III	ACNGT	2 cut(s)	373, 415
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 124
HpyF3I	CTNAG	3 cut(s)	111, 161, 298
Hsp92II	CATG	2 cut(s)	386, 483
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	2 cut(s)	127, 359
LpnPI	CCDG	5 cut(s)	42, 57, 87, 161, 320
Lsp1109I	GCAGC	3 cut(s)	73, 84, 163
LweI	GCATC	1 cut(s)	286
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	236, 298
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	3 cut(s)	80, 249, 313
MlyI	GAGTC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	3 cut(s)	206, 440, 476
MspCI	CTTAAG	1 cut(s)	439
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	103, 124
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	386, 483
NlaIV	GGNNCC	1 cut(s)	309
NruI	TCGCGA	1 cut(s)	118
PagI	TCATGA	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	260, 341
PkrI	GCNGC	3 cut(s)	63, 99, 153
Ple19I	CGATCG	1 cut(s)	328
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	153
PvuI	CGATCG	1 cut(s)	328
RruI	TCGCGA	1 cut(s)	118
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	3 cut(s)	206, 440, 476
SatI	GCNGC	3 cut(s)	62, 98, 152
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	3 cut(s)	135, 149, 414
SmlI	CTYRAG	2 cut(s)	197, 439
SmoI	CTYRAG	2 cut(s)	197, 439
Sse9I	AATT	3 cut(s)	80, 249, 313
SsiI	CCGC	2 cut(s)	104, 125
SstI	GAGCTC	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	373, 415
TaqI	TCGA	2 cut(s)	263, 328
TasI	AATT	3 cut(s)	80, 249, 313
TfiI	GAWTC	2 cut(s)	260, 341
Tru1I	TTAA	3 cut(s)	206, 440, 476
Tru9I	TTAA	3 cut(s)	206, 440, 476
TseI	GCWGC	3 cut(s)	61, 97, 151
TspDTI	ATGAA	3 cut(s)	299, 369, 399
Vha464I	CTTAAG	1 cut(s)	439
XapI	RAATTY	3 cut(s)	80, 249, 313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.