Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0017371

Physical Location & Seq

Genomic Coordinates Forward (+)

2691983 .. 2693463

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g03550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGACAGTAGTTCTTGGTTTGATCAACGCATTGAAGAAAAGAAATCCAACTTACCTTCAGCCACGCATTAAACTCCTTACTGTGAGAGTGATACATTCCCAGCGATATAAAAAAAATAAAAAAGTGGATACGGGTATTGTATGGCTCACAAACCTTTTCAATACGATTTTGAAAACAAAAAATTTGCCCAATAAGTGGCAAGAAAGCATTTTGGTGCCTATCTACATGAATAAGGGCGACATGCAAAATTGCAAGAACTATTGGGATATTAAGTTAATGATCTCAGACAATCAATTCAGGTTCATGCCAAGGCGCTTGATAACGGAGGCAATCTATCTCTTACGAAGTTCGAGGGAACGATATAGACATATGAAAAAGGATTTGCACATGATCTTTATAGATTTGGAAAAAATTTCGTTATCTTGGACTATCTTGCAAAATAATGGAGAATTAGATGGAGATCTCAACCATAGAATACAAGCTAGATGGATGAAGGGGAAAAATGCATCAGTTGTATTGTGCGATTGTCATATGACACTAAAGCTCAACAGAAAATTTTATAGGACGTTAATAAGGCTAGCGATGTTATATGGTACGGAATGTTGGGCGGTCAAAAAACAACACATATGTGGGCACACAAGAAATGATATAATTAAGAATGAGGATATCCAGGGTAAAGTACGAATGGCCATAGACATGCGAATTGAAGACTTAGGATGCCGATTAGAAGATGCAACTATAGGATGGAGGATCAGGGTAAAAAGAGTGGAATACTTGGAGTTAACGGAAGATTTGGCGAAAAATTGTCCTAGAATAAGGCTTGGTTGTTGTTGTTGTTGTTGTTGTTGTATACCTTTACCTAAGGGATATATGTTTGGTAACGATAAAAAAAAACACTTAATACTTGAATTAATTGAGGATTCCACTTATTCTTCCTGTTTTCCCATGAACATGGAAATCATTTATCAAGCATGCACTTCTATTTATGATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Tryp_alpha_amyl

Protein Analysis

332

Amino Acids

39.1

Weight (kDa)

9.44

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017371)

Species	Orthologous Gene IDs
malus_domestica	MD10G1119300.v1.1 MD13G1248900.v1.1 MD15G1256000.v1.1
pyrus_communis	pycom01g03110 pycom01g03550 pycom01g13430 pycom02g18720 pycom06g08950 pycom12g15660 pycom13g18260 pycom13g26750 pycom15g29290 pycom16g21160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	850
AciI	CCGC	1 cut(s)	608
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	3 cut(s)	181, 411, 554
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	2 cut(s)	595, 681
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	34, 160, 172, 707, 908
AjnI	CCWGG	1 cut(s)	669
AleI	CACNNNNGTG	1 cut(s)	627
AluBI	AGCT	2 cut(s)	482, 544
AluI	AGCT	2 cut(s)	482, 544
AlwI	GGATC	1 cut(s)	758
AoxI	GGCC	1 cut(s)	687
ApoI	RAATTY	3 cut(s)	181, 411, 554
AseI	ATTAAT	1 cut(s)	911
AspLEI	GCGC	1 cut(s)	315
AsuNHI	GCTAGC	1 cut(s)	577
AxyI	CCTNAGG	1 cut(s)	861
BaeGI	GKGCMC	1 cut(s)	636
BalI	TGGCCA	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	714
BccI	CCATC	3 cut(s)	449, 480, 738
BciT130I	CCWGG	1 cut(s)	671
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	21
BfaI	CTAG	3 cut(s)	483, 578, 810
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	3 cut(s)	515, 707, 721
BmtI	GCTAGC	1 cut(s)	581
BpiI	GAAGAC	1 cut(s)	714
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	308, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse21I	CCTNAGG	1 cut(s)	861
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	2 cut(s)	308, 670
BseGI	GGATG	3 cut(s)	495, 722, 749
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	636
BseYI	CCCAGC	1 cut(s)	99
BshFI	GGCC	1 cut(s)	689
BshNI	GGYRCC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	195
BsnI	GGCC	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	5 cut(s)	21, 279, 390, 460, 750
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	1 cut(s)	689
BspCNI	CTCAG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	216
BspOI	GCTAGC	1 cut(s)	581
BspPI	GGATC	1 cut(s)	758
BspT107I	GGYRCC	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	308, 670
BssMI	GATC	5 cut(s)	21, 279, 390, 460, 750
BssNAI	GTATAC	1 cut(s)	851
BssT1I	CCWWGG	1 cut(s)	308
Bst1107I	GTATAC	1 cut(s)	851
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	2 cut(s)	7, 82
BstC8I	GCNNGC	2 cut(s)	579, 973
BstDEI	CTNAG	3 cut(s)	283, 712, 861
BstF5I	GGATG	3 cut(s)	495, 722, 749
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	5 cut(s)	24, 282, 393, 463, 753
BstMBI	GATC	5 cut(s)	21, 279, 390, 460, 750
BstNI	CCWGG	1 cut(s)	671
BstNSI	RCATGY	3 cut(s)	244, 700, 975
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	1 cut(s)	738
BstSLI	GKGCMC	1 cut(s)	636
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	460
BstXI	CCANNNNNNTGG	1 cut(s)	952
BstYI	RGATCY	1 cut(s)	460
BstZ17I	GTATAC	1 cut(s)	851
Bsu36I	CCTNAGG	1 cut(s)	861
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	689
BtgZI	GCGATG	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	495, 722, 749
Cac8I	GCNNGC	2 cut(s)	579, 973
CfoI	GCGC	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	594, 680
CviAII	CATG	8 cut(s)	226, 241, 304, 388, 697, 946, 952, 972
CviJI	RGCY	7 cut(s)	61, 145, 482, 544, 577, 689, 820
CviKI_1	RGCY	7 cut(s)	61, 145, 482, 544, 577, 689, 820
CviQI	GTAC	2 cut(s)	594, 680
DdeI	CTNAG	3 cut(s)	283, 712, 861
DpnI	GATC	5 cut(s)	23, 281, 392, 462, 752
DpnII	GATC	5 cut(s)	21, 279, 390, 460, 750
EaeI	YGGCCR	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	41
Eco81I	CCTNAGG	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	669
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	308
EcoT22I	ATGCAT	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	8 cut(s)	229, 244, 307, 391, 700, 949, 955, 975
FatI	CATG	8 cut(s)	225, 240, 303, 387, 696, 945, 951, 971
FauNDI	CATATG	3 cut(s)	369, 531, 626
FbaI	TGATCA	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	850
FokI	GGATG	3 cut(s)	502, 729, 756
FspBI	CTAG	3 cut(s)	483, 578, 810
GlaI	GCGC	1 cut(s)	314
GsaI	CCCAGC	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	689
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	8 cut(s)	229, 244, 307, 391, 700, 949, 955, 975
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HinfI	GANTC	1 cut(s)	920
HpaI	GTTAAC	1 cut(s)	783
Hpy166II	GTNNAC	2 cut(s)	783, 851
Hpy188I	TCNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	783, 851
HpyAV	CCTTC	2 cut(s)	65, 487
HpyCH4III	ACNGT	2 cut(s)	7, 82
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	7 cut(s)	244, 252, 385, 436, 506, 734, 975
HpyF3I	CTNAG	3 cut(s)	283, 712, 861
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	8 cut(s)	229, 244, 307, 391, 700, 949, 955, 975
HspAI	GCGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	21
KspAI	GTTAAC	1 cut(s)	783
Kzo9I	GATC	5 cut(s)	21, 279, 390, 460, 750
LpnPI	CCDG	6 cut(s)	113, 283, 656, 683, 739, 949
LweI	GCATC	3 cut(s)	515, 707, 721
MaeI	CTAG	3 cut(s)	483, 578, 810
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	5 cut(s)	23, 281, 392, 462, 752
MboI	GATC	5 cut(s)	21, 279, 390, 460, 750
MboII	GAAGA	5 cut(s)	46, 719, 740, 800, 924
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	636
MlsI	TGGCCA	1 cut(s)	689
MluNI	TGGCCA	1 cut(s)	689
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	319, 345, 655, 741, 910
Mox20I	TGGCCA	1 cut(s)	689
Mph1103I	ATGCAT	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	8 cut(s)	69, 270, 275, 569, 654, 782, 899, 911
MslI	CAYNNNNRTG	4 cut(s)	212, 627, 695, 950
Msp20I	TGGCCA	1 cut(s)	689
MspR9I	CCNGG	1 cut(s)	671
MvaI	CCWGG	1 cut(s)	671
NdeI	CATATG	3 cut(s)	369, 531, 626
NdeII	GATC	5 cut(s)	21, 279, 390, 460, 750
NheI	GCTAGC	1 cut(s)	577
NlaIII	CATG	8 cut(s)	229, 244, 307, 391, 700, 949, 955, 975
NlaIV	GGNNCC	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	3 cut(s)	244, 700, 975
OliI	CACNNNNGTG	1 cut(s)	627
PaeI	GCATGC	1 cut(s)	975
PfeI	GAWTC	1 cut(s)	920
PflMI	CCANNNNNTGG	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	911
Psp6I	CCWGG	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	2 cut(s)	595, 681
RsaNI	GTAC	2 cut(s)	594, 680
RseI	CAYNNNNRTG	4 cut(s)	212, 627, 695, 950
SaqAI	TTAA	8 cut(s)	69, 270, 275, 569, 654, 782, 899, 911
Sau3AI	GATC	5 cut(s)	21, 279, 390, 460, 750
ScrFI	CCNGG	1 cut(s)	671
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	8 cut(s)	57, 156, 302, 484, 546, 569, 856, 862
SfaNI	GCATC	3 cut(s)	515, 707, 721
SfcI	CTRYAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	4 cut(s)	212, 627, 695, 950
SphI	GCATGC	1 cut(s)	975
SsiI	CCGC	1 cut(s)	608
SspMI	CTAG	3 cut(s)	483, 578, 810
StyD4I	CCNGG	1 cut(s)	669
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	7, 82
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	8 cut(s)	69, 270, 275, 569, 654, 782, 899, 911
Tru9I	TTAA	8 cut(s)	69, 270, 275, 569, 654, 782, 899, 911
TspDTI	ATGAA	5 cut(s)	242, 292, 386, 506, 962
TspGWI	ACGGA	3 cut(s)	338, 611, 800
Van91I	CCANNNNNTGG	1 cut(s)	195
VspI	ATTAAT	1 cut(s)	911
XapI	RAATTY	3 cut(s)	181, 411, 554
XceI	RCATGY	3 cut(s)	244, 700, 975
XmiI	GTMKAC	1 cut(s)	850
XspI	CTAG	3 cut(s)	483, 578, 810
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.