pycom01g13430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0017371
Physical Location & Seq
Forward (+)
13884700 .. 13885196
497 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13430.1

Sequence Viewer

Length: 456 bp
ATGGCGTGCGTAGATGCCGTCTGTTCCCGCCTTTGTAGCGTAGCCGTCAGCTTCCGACTGCAAGAAAGCACCTTTGTGGTAATATTTCTGCATGAACATCCACTTCTGCTTTGGTTGTGGTGCGGGTTTCAGGTTCGTCCTCTCCCACTCCGCTTCCCGGTCCTCCCTGTCACTCTTGATCCGGACAATCTCTCTTGCCTTCCAAGCTTCATACTCCTCTGCCTCGTTTACTTCATCATCACTATCAATACCAGCAACAATGTTTGCTTCCTGATCCAAACCTTTGTCCTTCCAGATCTCCTCAACTACAATCTGCTTTGTCTTTCTCTTCCCTTCCTCCAATTTCTTCTTCCTTGGCTCCTCAAGGGCCCATTCTTCGGCTTCAAGTTGCACACGCTCAGCAATAGTATGTCTCCCCAACTTTGGGAACAAACAACGGCTTCACCATCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.19

Weight (kDa)

6.23

Isoelectric Point (pI)

58.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 3 cut(s) 28, 123, 151
AclWI GGATC 2 cut(s) 173, 268
AfiI CCNNNNNNNGG 4 cut(s) 157, 377, 423, 424
AgsI TTSAA 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 2 cut(s) 51, 207
AluI AGCT 2 cut(s) 51, 207
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 2 cut(s) 173, 268
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 1 cut(s) 367
ApaI GGGCCC 1 cut(s) 371
AspS9I GGNCC 3 cut(s) 160, 367, 368
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 435
AvaII GGWCC 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 371
BccI CCATC 1 cut(s) 454
BceAI ACGGC 3 cut(s) 2, 29, 453
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 417
BglII AGATCT 1 cut(s) 295
BlpI GCTNAGC 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 3 cut(s) 160, 367, 368
BmiI GGNNCC 2 cut(s) 359, 369
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 4
Bpu1102I GCTNAGC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 377, 423, 424
BseAI TCCGGA 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 4 cut(s) 157, 377, 423, 424
BseMII CTCAG 1 cut(s) 412
BseRI GAGGAG 3 cut(s) 206, 290, 350
BseSI GKGCMC 1 cut(s) 371
BshFI GGCC 1 cut(s) 369
BsiSI CCGG 2 cut(s) 158, 182
BslI CCNNNNNNNGG 4 cut(s) 157, 377, 423, 424
BsmAI GTCTC 1 cut(s) 417
BsnI GGCC 1 cut(s) 369
Bsp120I GGGCCC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 371
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 3 cut(s) 178, 273, 295
Bsp1720I GCTNAGC 1 cut(s) 398
BspACI CCGC 3 cut(s) 28, 123, 151
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 411
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 359, 369
BspPI GGATC 2 cut(s) 173, 268
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 178, 273, 295
BssT1I CCWWGG 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 3 cut(s) 181, 276, 298
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 3 cut(s) 178, 273, 295
BstMWI GCNNNNNNNGC 2 cut(s) 36, 204
BstSCI CCNGG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 369
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 3 cut(s) 160, 367, 368
CviAII CATG 2 cut(s) 92, 453
CviJI RGCY 7 cut(s) 44, 51, 207, 358, 369, 381, 440
CviKI_1 RGCY 7 cut(s) 44, 51, 207, 358, 369, 381, 440
DdeI CTNAG 1 cut(s) 398
DpnI GATC 3 cut(s) 180, 275, 297
DpnII GATC 3 cut(s) 178, 273, 295
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 2 cut(s) 95, 456
FaiI YATR 4 cut(s) 93, 212, 410, 454
FatI CATG 2 cut(s) 91, 452
FauI CCCGC 2 cut(s) 35, 116
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 371
HaeIII GGCC 1 cut(s) 369
HapII CCGG 2 cut(s) 158, 182
Hin1II CATG 2 cut(s) 95, 456
HindIII AAGCTT 1 cut(s) 205
HpaII CCGG 2 cut(s) 158, 182
HphI GGTGA 1 cut(s) 435
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 4 cut(s) 176, 182, 271, 293
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 3 cut(s) 209, 299, 343
HpyCH4V TGCA 3 cut(s) 61, 91, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 204
HpyF3I CTNAG 1 cut(s) 398
Hsp92II CATG 2 cut(s) 95, 456
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 3 cut(s) 178, 273, 295
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 7 cut(s) 116, 171, 180, 195, 265, 284, 306
LweI GCATC 1 cut(s) 4
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 180, 275, 297
MboI GATC 3 cut(s) 178, 273, 295
MboII GAAGA 4 cut(s) 320, 338, 341, 367
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 7 cut(s) 150, 173, 227, 233, 311, 347, 371
MroI TCCGGA 1 cut(s) 181
MslI CAYNNNNRTG 2 cut(s) 74, 451
MspI CCGG 2 cut(s) 158, 182
MspR9I CCNGG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 36, 204
NciI CCSGG 1 cut(s) 158
NdeII GATC 3 cut(s) 178, 273, 295
NlaIII CATG 2 cut(s) 95, 456
NlaIV GGNNCC 2 cut(s) 359, 369
NmuCI GTSAC 1 cut(s) 169
OliI CACNNNNGTG 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 359, 369
PspOMI GGGCCC 1 cut(s) 367
PspPI GGNCC 3 cut(s) 160, 367, 368
PsuI RGATCY 1 cut(s) 295
RseI CAYNNNNRTG 2 cut(s) 74, 451
Sau3AI GATC 3 cut(s) 178, 273, 295
Sau96I GGNCC 3 cut(s) 160, 367, 368
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 371
SetI ASST 5 cut(s) 53, 74, 135, 209, 284
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 2 cut(s) 74, 451
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 1 cut(s) 341
SsiI CCGC 3 cut(s) 28, 123, 151
SspI AATATT 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 353
TasI AATT 1 cut(s) 341
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 3 cut(s) 108, 199, 223
VpaK11BI GGWCC 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.