pycom15g29290

2S seed storage protein 5-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
26032102 .. 26032480
379 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g29290.2

Sequence Viewer

Length: 339 bp
ATGGTCTTTATAAATTTGGAAAAAGCGTATGATAGGGTCCCAAGAAACATTCTTTGGAGGATTGTAGAGAAGAAAGGAGTACGAGTAGCATATATCCAAGCTATAAAGGATATGTATGATGGAGCAAAGACTGCCGTAAGAACTCATGAAGGACAAACCGAAAGCTTCCCCATAACTGTAGGGTTACATCAAGGCTCATCCTTAAGTCCTTACCTTTTTGCATTGGTAATGGATGAGTTAACGGGATATATTCAAGATGATATTCCTTGGTGTATGCTTTTCGAATGCGATATAATGTTGATAGATGAAACTCAGGAAGGGGTAAATGTCTTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.82

Weight (kDa)

4.74

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 81
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 254
AjuI GAANNNNNNNTTGG 2 cut(s) 37, 69
AluBI AGCT 2 cut(s) 101, 165
AluI AGCT 2 cut(s) 101, 165
ApoI RAATTY 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 37
AsuII TTCGAA 1 cut(s) 282
AvaII GGWCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 322
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 38, 39
BpiI GAAGAC 1 cut(s) 322
Bpu14I TTCGAA 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 197, 238
BseMII CTCAG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 325
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 38, 39
BspT104I TTCGAA 1 cut(s) 282
BspTI CTTAAG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 178
BstAFI CTTAAG 1 cut(s) 202
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 2 cut(s) 197, 238
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 197, 238
CciI TCATGA 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 80
CviAII CATG 1 cut(s) 146
CviJI RGCY 3 cut(s) 101, 165, 195
CviKI_1 RGCY 3 cut(s) 101, 165, 195
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 1 cut(s) 149
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 145
FokI GGATG 2 cut(s) 184, 245
Hin1II CATG 1 cut(s) 149
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 163
HpaI GTTAAC 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 240
Hpy188III TCNNGA 3 cut(s) 146, 254, 314
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 2 cut(s) 143, 311
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 1 cut(s) 149
KflI GGGWCCC 1 cut(s) 37
KspAI GTTAAC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 183
MboII GAAGA 2 cut(s) 82, 322
MluCI AATT 1 cut(s) 13
MnlI CCTC 1 cut(s) 51
MseI TTAA 3 cut(s) 203, 239, 337
MspCI CTTAAG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 2 cut(s) 38, 39
NspV TTCGAA 1 cut(s) 282
PagI TCATGA 1 cut(s) 145
PctI GAATGC 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 37
PsiI TTATAA 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 38, 39
PspPI GGNCC 1 cut(s) 37
PspPPI RGGWCCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 203, 239, 337
Sau96I GGNCC 1 cut(s) 37
SetI ASST 3 cut(s) 103, 167, 216
SfcI CTRYAG 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 282
SgeI CNNG 9 cut(s) 54, 95, 110, 158, 203, 255, 266, 279, 326
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 13
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 282
TasI AATT 1 cut(s) 13
Tru1I TTAA 3 cut(s) 203, 239, 337
Tru9I TTAA 3 cut(s) 203, 239, 337
TspDTI ATGAA 2 cut(s) 162, 321
Vha464I CTTAAG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.