MD13G1252700.v1.1

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
27049619 .. 27053293
3675 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1252700.v1.1.491

Sequence Viewer

Length: 1659 bp
ATGGATTCTTCTCCTCAGAACTGGCTCCTCGGCTTCTCTCTTTCCAACCACTCTCATCATCATCACCCTTCTCCCGATCTCTCCCTCTTCGAGGCCTTCACCTCCAATTCACCCACCCACTCTGCAGCTACCGTCGCCGGTCATCATCATCAAGGTGCAAGTCCAACTTCAGCAACCGACCTCTCCATCTTCAGTTCCGGAATTAACGGACCAAAGCTCGAGGATTTTCTCGGAGGTTGCACCCCCGCAGCCAACACCGTCACCCCGACCTCACTCCCTCAGTTTGCTACTGCCGATCATCATCATCAAATCACTCCTCTCGCTTTGTCCCAAAACGAGATTTACGACTCCGAACTCAAAACCATAGCCGCTAGTTTCCTCCGTGGTTTCTCCACCACCGCTACCACCACCACCACCGCTGCTACTTTACAAACGACCAAACTACAGAACCACCACCCTCTAGCCTCTTCCGATCCCACCCCCAAAAAACCCGCCGATACCTTCGGCCAACGCACATCCATTTACCGCGGAGTCACACGGCATAGGTGGACCGGAAGATATGAAGCGCATCTGTGGGATAACAGTTGCAGAAGAGAAGGACAAAGTAGGAAGGGCAGACAAGGTGGATATGATAAAGAAGAAAAGGCAGCAAGAGCCTACGATCTGGCAGCTCTCAAGTACTGGGGTCCGACCACCACTACAAACTTTCCGGTTATTAACTACGAGAAAGAATTGTCGGAGATGAAGAACATGACTAGGCAAGAATTTGTTGCTTCTCTTCGGAGGAAAAGTAGTGGATTTTCTAGAGGAGCTTCTATTTACAGAGGGGTCACAAGGCATCATCAACATGGTAGATGGCAGGCAAGAATAGGAAGGGTTGCAGGCAACAAAGATCTCTACCTTGGAACTTTCAGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCGGCAATCAAGTTCCGAGGCCTAAATGCTGTGACCAACTTCGACATGAGCCGCTACGATGTGAAGAGCATTGCCAGCAGCAACCTTCCCATAGGAGGAATGTCCGGAAAATCCAAAAACTCATCAGACTCCGACAGTAAGAGCATCGAAGGTAACCGTTCAGCGGATGATCGAGATCTCTCCTCTGCATCCTCCGTGACCTTTGCATCTCAACAACCTAGTTCCTCCACACTAAGCTTTGCAATCCCCCTCAAACAAGACCCATCATCAGATTACTGGTCCAACATTTTCGGATATAACCCTTCTCAAAACAATACCAAGAACCCTACTACTGTTTCAGTTGCACCATCATCATCATTGTTCCAGTCACGTGCCATTGGGTCTTATGGTAACAATTCCTCACCAATACCATTCAACATGGACTTCTCTTCAACTTTTAGCACTTCTGCTTCTGAAACCAACAATGGGTACTTTGGTAACTTCAATATAGATGGTCAGCAACACCAAGAACAGTTGCAACACCACCAACATGAACAAAGTACTATTACTGGTAGTGGTTCAATCCCATTTGCTACACCCATTGCTTCAAATAGCAACAATGGTTATGAAACTTCTTCTGGTTATGGAAGTTGGATTGCGCCAAGTATTCACACATTTCAGACTCATGCAAAGACCAATCTCTTTCAGACACCAATTTTTGGGATGGAATAA

Protein Analysis

553

Amino Acids

60.22

Weight (kDa)

7.89

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 175 - 229 5.5e-08 AP2 domain
AP2 PF00847 274 - 323 6.4e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011755)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1646
AccII CGCG 1 cut(s) 528
AccIII TCCGGA 2 cut(s) 197, 1052
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 764
AcuI CTGAAG 2 cut(s) 153, 175
AcvI CACGTG 1 cut(s) 1319
AfaI GTAC 3 cut(s) 680, 1418, 1489
AfiI CCNNNNNNNGG 5 cut(s) 91, 1043, 1111, 1413, 1646
AgsI TTSAA 5 cut(s) 1363, 1380, 1432, 1509, 1536
AluBI AGCT 6 cut(s) 128, 217, 671, 812, 929, 1185
AluI AGCT 6 cut(s) 128, 217, 671, 812, 929, 1185
AlwI GGATC 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 218
Aor13HI TCCGGA 2 cut(s) 197, 1052
AoxI GGCC 4 cut(s) 93, 505, 936, 967
ApeKI GCWGC 7 cut(s) 125, 248, 419, 647, 668, 929, 1026
ApoI RAATTY 1 cut(s) 764
AspLEI GCGC 2 cut(s) 568, 1588
AspS9I GGNCC 4 cut(s) 209, 549, 686, 1227
AsuHPI GGTGA 5 cut(s) 56, 91, 102, 253, 1341
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 4 cut(s) 209, 549, 686, 1227
BaeI ACNNNNGTAYC 2 cut(s) 1408, 1441
BbrPI CACGTG 1 cut(s) 1319
BbvCI CCTCAGC 1 cut(s) 933
BbvI GCAGC 7 cut(s) 137, 260, 406, 659, 680, 916, 1038
BccI CCATC 6 cut(s) 194, 849, 1219, 1303, 1433, 1645
BceAI ACGGC 1 cut(s) 554
BfaI CTAG 5 cut(s) 372, 461, 756, 804, 1167
BfmI CTRYAG 2 cut(s) 123, 443
BglII AGATCT 2 cut(s) 892, 1123
BmcAI AGTACT 2 cut(s) 680, 1489
Bme18I GGWCC 4 cut(s) 209, 549, 686, 1227
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 4 cut(s) 209, 549, 686, 1227
BmiI GGNNCC 2 cut(s) 26, 687
BmrI ACTGGG 1 cut(s) 691
BmsI GCATC 5 cut(s) 577, 847, 1101, 1145, 1163
BmuI ACTGGG 1 cut(s) 691
Bpu10I CCTNAGC 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 659
BsaAI YACGTR 1 cut(s) 1319
BsaBI GATNNNNATC 2 cut(s) 300, 1122
BsaJI CCNNGG 5 cut(s) 28, 382, 526, 901, 964
BsaWI WCCGGW 4 cut(s) 197, 551, 709, 1052
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 1043, 1111, 1413, 1646
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 5 cut(s) 26, 686, 1229, 1312, 1501
Bse3DI GCAATG 3 cut(s) 945, 1017, 1527
Bse8I GATNNNNATC 2 cut(s) 300, 1122
BseAI TCCGGA 2 cut(s) 197, 1052
BseDI CCNNGG 5 cut(s) 28, 382, 526, 901, 964
BseGI GGATG 4 cut(s) 515, 1120, 1136, 1656
BseJI GATNNNNATC 2 cut(s) 300, 1122
BseLI CCNNNNNNNGG 5 cut(s) 91, 1043, 1111, 1413, 1646
BseMI GCAATG 3 cut(s) 945, 1017, 1527
BseMII CTCAG 3 cut(s) 29, 293, 924
BseNI ACTGG 5 cut(s) 26, 686, 1229, 1312, 1501
BseRI GAGGAG 4 cut(s) 17, 306, 822, 1120
BseXI GCAGC 7 cut(s) 137, 260, 406, 659, 680, 916, 1038
Bsh1236I CGCG 1 cut(s) 528
BshFI GGCC 4 cut(s) 95, 507, 938, 969
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 5 cut(s) 138, 198, 552, 710, 1053
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 5 cut(s) 91, 1043, 1111, 1413, 1646
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 4 cut(s) 95, 507, 938, 969
BsoBI CYCGRG 1 cut(s) 218
Bsp13I TCCGGA 2 cut(s) 197, 1052
Bsp143I GATC 7 cut(s) 76, 295, 472, 661, 892, 1117, 1123
BspANI GGCC 4 cut(s) 95, 507, 938, 969
BspCNI CTCAG 3 cut(s) 28, 292, 925
BspEI TCCGGA 2 cut(s) 197, 1052
BspFNI CGCG 1 cut(s) 528
BspLI GGNNCC 2 cut(s) 26, 687
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 467
BspQI GCTCTTC 1 cut(s) 1007
BsrDI GCAATG 3 cut(s) 945, 1017, 1527
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 5 cut(s) 26, 686, 1229, 1312, 1501
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 5 cut(s) 28, 382, 526, 901, 964
BssMI GATC 7 cut(s) 76, 295, 472, 661, 892, 1117, 1123
BssT1I CCWWGG 1 cut(s) 901
Bst4CI ACNGT 7 cut(s) 133, 259, 584, 1085, 1106, 1282, 1461
Bst6I CTCTTC 6 cut(s) 92, 472, 586, 783, 1007, 1381
BstBAI YACGTR 1 cut(s) 1319
BstC8I GCNNGC 3 cut(s) 861, 883, 1024
BstDEI CTNAG 4 cut(s) 15, 279, 933, 1181
BstDSI CCRYGG 2 cut(s) 382, 526
BstEII GGTNACC 1 cut(s) 1100
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 4 cut(s) 515, 1120, 1136, 1656
BstFNI CGCG 1 cut(s) 528
BstHHI GCGC 2 cut(s) 568, 1588
BstKTI GATC 7 cut(s) 79, 298, 475, 664, 895, 1120, 1126
BstMBI GATC 7 cut(s) 76, 295, 472, 661, 892, 1117, 1123
BstMWI GCNNNNNNNGC 4 cut(s) 134, 653, 935, 1023
BstPI GGTNACC 1 cut(s) 1100
BstSFI CTRYAG 2 cut(s) 123, 443
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 7 cut(s) 137, 260, 406, 659, 680, 916, 1038
BstX2I RGATCY 2 cut(s) 892, 1123
BstYI RGATCY 2 cut(s) 892, 1123
BsuRI GGCC 4 cut(s) 95, 507, 938, 969
BtgI CCRYGG 2 cut(s) 382, 526
BtsCI GGATG 4 cut(s) 515, 1120, 1136, 1656
Cac8I GCNNGC 3 cut(s) 861, 883, 1024
CfoI GCGC 2 cut(s) 568, 1588
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 4 cut(s) 209, 549, 686, 1227
Cfr42I CCGCGG 1 cut(s) 529
Csp6I GTAC 3 cut(s) 679, 1417, 1488
CviAII CATG 6 cut(s) 751, 848, 994, 1366, 1478, 1613
CviQI GTAC 3 cut(s) 679, 1417, 1488
DdeI CTNAG 4 cut(s) 15, 279, 933, 1181
DpnI GATC 7 cut(s) 78, 297, 474, 663, 894, 1119, 1125
DpnII GATC 7 cut(s) 76, 295, 472, 661, 892, 1117, 1123
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 6 cut(s) 92, 472, 586, 783, 1007, 1381
EarI CTCTTC 6 cut(s) 92, 472, 586, 783, 1007, 1381
Eco130I CCWWGG 1 cut(s) 901
Eco147I AGGCCT 3 cut(s) 95, 938, 969
Eco47I GGWCC 4 cut(s) 209, 549, 686, 1227
Eco57I CTGAAG 2 cut(s) 153, 175
Eco72I CACGTG 1 cut(s) 1319
Eco88I CYCGRG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 1100
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 1100
EcoT14I CCWWGG 1 cut(s) 901
ErhI CCWWGG 1 cut(s) 901
FaeI CATG 6 cut(s) 754, 851, 997, 1369, 1481, 1616
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FaqI GGGAC 1 cut(s) 313
FatI CATG 6 cut(s) 750, 847, 993, 1365, 1477, 1612
FauI CCCGC 2 cut(s) 253, 499
FokI GGATG 3 cut(s) 502, 1123, 1127
FspBI CTAG 5 cut(s) 372, 461, 756, 804, 1167
GlaI GCGC 2 cut(s) 567, 1587
HaeIII GGCC 4 cut(s) 95, 507, 938, 969
HapII CCGG 5 cut(s) 138, 198, 552, 710, 1053
HhaI GCGC 2 cut(s) 568, 1588
Hin1II CATG 6 cut(s) 754, 851, 997, 1369, 1481, 1616
Hin6I GCGC 2 cut(s) 566, 1586
HinP1I GCGC 2 cut(s) 566, 1586
HindIII AAGCTT 1 cut(s) 1183
HinfI GANTC 5 cut(s) 5, 347, 531, 1076, 1609
HpaII CCGG 5 cut(s) 138, 198, 552, 710, 1053
HphI GGTGA 5 cut(s) 56, 91, 102, 253, 1341
Hpy166II GTNNAC 1 cut(s) 549
Hpy188III TCNNGA 5 cut(s) 74, 198, 804, 1053, 1121
Hpy8I GTNNAC 1 cut(s) 549
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 9 cut(s) 78, 106, 511, 590, 604, 867, 1043, 1091, 1260
HpyCH4III ACNGT 7 cut(s) 133, 259, 584, 1085, 1106, 1282, 1461
HpyCH4IV ACGT 1 cut(s) 1318
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 653, 935, 1023
HpyF3I CTNAG 4 cut(s) 15, 279, 933, 1181
HpySE526I ACGT 1 cut(s) 1318
Hsp92II CATG 6 cut(s) 754, 851, 997, 1369, 1481, 1616
HspAI GCGC 2 cut(s) 566, 1586
Kpn2I TCCGGA 2 cut(s) 197, 1052
KspI CCGCGG 1 cut(s) 529
Kzo9I GATC 7 cut(s) 76, 295, 472, 661, 892, 1117, 1123
LguI GCTCTTC 1 cut(s) 1007
LmnI GCTCC 2 cut(s) 30, 809
Lsp1109I GCAGC 7 cut(s) 137, 260, 406, 659, 680, 916, 1038
LweI GCATC 5 cut(s) 577, 847, 1101, 1145, 1163
MaeI CTAG 5 cut(s) 372, 461, 756, 804, 1167
MaeII ACGT 1 cut(s) 1318
MaeIII GTNAC 9 cut(s) 259, 532, 829, 979, 1100, 1144, 1314, 1337, 1424
MalI GATC 7 cut(s) 78, 297, 474, 663, 894, 1119, 1125
MboI GATC 7 cut(s) 76, 295, 472, 661, 892, 1117, 1123
MflI RGATCY 2 cut(s) 892, 1123
MluCI AATT 6 cut(s) 106, 201, 731, 764, 1342, 1641
MlyI GAGTC 4 cut(s) 341, 540, 1070, 1603
MmeI TCCRAC 7 cut(s) 69, 188, 713, 717, 1104, 1254, 1559
MroI TCCGGA 2 cut(s) 197, 1052
MseI TTAA 2 cut(s) 204, 717
MslI CAYNNNNRTG 3 cut(s) 153, 846, 1476
MspA1I CMGCKG 3 cut(s) 419, 528, 1112
MspI CCGG 5 cut(s) 138, 198, 552, 710, 1053
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 4 cut(s) 134, 653, 935, 1023
NdeII GATC 7 cut(s) 76, 295, 472, 661, 892, 1117, 1123
NlaIII CATG 6 cut(s) 754, 851, 997, 1369, 1481, 1616
NlaIV GGNNCC 2 cut(s) 26, 687
NmeAIII GCCGAG 1 cut(s) 9
NmuCI GTSAC 6 cut(s) 259, 532, 829, 979, 1144, 1314
PaeR7I CTCGAG 1 cut(s) 218
PceI AGGCCT 3 cut(s) 95, 938, 969
PciSI GCTCTTC 1 cut(s) 1007
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 1 cut(s) 1646
PleI GAGTC 4 cut(s) 341, 539, 1070, 1603
PmaCI CACGTG 1 cut(s) 1319
PmlI CACGTG 1 cut(s) 1319
PpsI GAGTC 4 cut(s) 341, 539, 1070, 1603
Ppu21I YACGTR 1 cut(s) 1319
PspCI CACGTG 1 cut(s) 1319
PspEI GGTNACC 1 cut(s) 1100
PspN4I GGNNCC 2 cut(s) 26, 687
PspPI GGNCC 4 cut(s) 209, 549, 686, 1227
PspXI VCTCGAGB 1 cut(s) 218
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 2 cut(s) 892, 1123
RsaI GTAC 3 cut(s) 680, 1418, 1489
RsaNI GTAC 3 cut(s) 679, 1417, 1488
RseI CAYNNNNRTG 3 cut(s) 153, 846, 1476
SacII CCGCGG 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 1007
SaqAI TTAA 2 cut(s) 204, 717
Sau3AI GATC 7 cut(s) 76, 295, 472, 661, 892, 1117, 1123
Sau96I GGNCC 4 cut(s) 209, 549, 686, 1227
ScaI AGTACT 2 cut(s) 680, 1489
SchI GAGTC 4 cut(s) 341, 540, 1070, 1603
SfaNI GCATC 5 cut(s) 577, 847, 1101, 1145, 1163
SfcI CTRYAG 2 cut(s) 123, 443
Sfr274I CTCGAG 1 cut(s) 218
Sfr303I CCGCGG 1 cut(s) 529
SgrBI CCGCGG 1 cut(s) 529
SinI GGWCC 4 cut(s) 209, 549, 686, 1227
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 3 cut(s) 153, 846, 1476
SmlI CTYRAG 2 cut(s) 218, 674
SmoI CTYRAG 2 cut(s) 218, 674
Sse9I AATT 6 cut(s) 106, 201, 731, 764, 1342, 1641
SseBI AGGCCT 3 cut(s) 95, 938, 969
SspMI CTAG 5 cut(s) 372, 461, 756, 804, 1167
StuI AGGCCT 3 cut(s) 95, 938, 969
StyI CCWWGG 1 cut(s) 901
TaaI ACNGT 7 cut(s) 133, 259, 584, 1085, 1106, 1282, 1461
TaiI ACGT 1 cut(s) 1321
TaqI TCGA 5 cut(s) 90, 219, 990, 1095, 1120
TasI AATT 6 cut(s) 106, 201, 731, 764, 1342, 1641
TatI WGTACW 2 cut(s) 678, 1487
TauI GCSGC 3 cut(s) 371, 953, 1002
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 204, 717
Tru9I TTAA 2 cut(s) 204, 717
TseFI GTSAC 6 cut(s) 259, 532, 829, 979, 1144, 1314
TseI GCWGC 7 cut(s) 125, 248, 419, 647, 668, 929, 1026
Tsp45I GTSAC 6 cut(s) 259, 532, 829, 979, 1144, 1314
TspDTI ATGAA 4 cut(s) 576, 758, 1494, 1569
TspGWI ACGGA 3 cut(s) 222, 371, 1132
Van91I CCANNNNNTGG 1 cut(s) 1646
VpaK11BI GGWCC 4 cut(s) 209, 549, 686, 1227
XagI CCTNNNNNAGG 1 cut(s) 89
XapI RAATTY 1 cut(s) 764
XbaI TCTAGA 1 cut(s) 803
XhoI CTCGAG 1 cut(s) 218
XspI CTAG 5 cut(s) 372, 461, 756, 804, 1167
ZrmI AGTACT 2 cut(s) 680, 1489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.