Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011755

Physical Location & Seq

Genomic Coordinates Reverse (-)

15420605 .. 15422758

Gene Structure 2154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG101400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGATTCTAATTCCCCTCCTCATCATCATCATCCTCAGAACTGGCTCGGTTTCTCTCTTTCCAACCACTTCTCCTCTCCCCCTCATAACTCCCACCTCTCTCTCTTCGAGGCCTTCACCTCCTCTCCAGACACCGGGGTTAACTCTGCGGCGTCGGATCATCATCAAGACGCACATGCAGGTGCAACTGAGACCGATCTCTCCATCTTCAGCGGAGTCGGCCCGAAGCTCGAGGACTTTCTCGGTGGTGGCTGCACCACCACCACCACCGCTGGCGTCGCAACCGCCACAGCCGACGTCATCACTACCGCATCAGTTACCAACTATGAGAAGGAATTGGCGGGGATGAAGAACATGTCTAGGCAGGAATTTGTTGCTTCCCTTAGAAGGAAAAGTAGTGGATTTTCTAGAGGAGCCTCGATTTACAGAGGGGTGACAAGGCACCATCAACATGGTAGATGGCAGGCAAGAATAGGAAGGGTTGCTGGCAACAAAGATCTCTACCTAGGCACTTTCAGTGAGTATTACCTTCACTTTTACCTTGATGTTATAATCAGGGTAATGTTTTTAGTTTTTTACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0040019 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045995 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

194

Amino Acids

21.32

Weight (kDa)

6.92

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57390
fragaria_vesca	FvH4_4g08100
malus_domestica	MD13G1252700.v1.1
prunus_persica	Prupe.1G084900_v2.0.a1
pyrus_communis	pycom13g22530
rosa_chinensis	RchiOBHm_Chr4g0401801
rosa_laevigata	RLG00000009119
rosa_multiflora	Rmu_sc0001405.1_g000041
rosa_roxburghii	Rroxscaffold_5G00346370
rosa_rugosa	Rorug04G0033300
rosa_samantha	Rh4AG109500 Rh4AG109600 Rh4BG103500 Rh4BG103600 Rh4CG117600 Rh4CG117700 Rh4DG101300 Rh4DG101400
rosa_wichuraiana	Rw4G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AarI	CACCTGC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	300
Acc36I	ACCTGC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	441
AciI	CCGC	6 cut(s)	149, 213, 270, 285, 309, 341
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	193
AcyI	GRCGYC	3 cut(s)	152, 276, 297
AfiI	CCNNNNNNNGG	2 cut(s)	134, 387
AflIII	ACRYGT	1 cut(s)	354
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	111, 220
ApeKI	GCWGC	1 cut(s)	252
ApoI	RAATTY	1 cut(s)	368
AspA2I	CCTAGG	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	109, 445
AvaI	CYCGRG	1 cut(s)	230
AvrII	CCTAGG	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	3 cut(s)	212, 453, 453
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	3 cut(s)	360, 408, 506
BfuAI	ACCTGC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	2 cut(s)	150, 253
BlnI	CCTAGG	1 cut(s)	505
BlsI	GCNGC	2 cut(s)	151, 254
Bme1390I	CCNGG	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	415, 443
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	162
BsaHI	GRCGYC	3 cut(s)	152, 276, 297
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	135, 505
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 387
Bse1I	ACTGG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	135, 505
BseGI	GGATG	2 cut(s)	31, 351
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	134, 387
BseMII	CTCAG	2 cut(s)	50, 180
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	4 cut(s)	9, 64, 112, 426
BseXI	GCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	113, 222
BshNI	GGYRCC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	134, 387
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	113, 222
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	157, 196, 496
BspACI	CCGC	6 cut(s)	149, 213, 270, 285, 309, 341
BspANI	GGCC	2 cut(s)	113, 222
BspCNI	CTCAG	2 cut(s)	49, 181
BspLI	GGNNCC	2 cut(s)	415, 443
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	441
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	135, 505
BssMI	GATC	3 cut(s)	157, 196, 496
BssNI	GRCGYC	3 cut(s)	152, 276, 297
BssT1I	CCWWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	3 cut(s)	152, 276, 297
BstC8I	GCNNGC	3 cut(s)	274, 465, 487
BstDEI	CTNAG	3 cut(s)	36, 189, 383
BstF5I	GGATG	2 cut(s)	31, 351
BstKTI	GATC	3 cut(s)	160, 199, 499
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	3 cut(s)	157, 196, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 278
BstNSI	RCATGY	2 cut(s)	179, 358
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	113, 222
BtsCI	GGATG	2 cut(s)	31, 351
BtsIMutI	CAGTG	1 cut(s)	523
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	3 cut(s)	274, 465, 487
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	3 cut(s)	141, 179, 265
CviAII	CATG	3 cut(s)	176, 355, 452
CviJI	RGCY	7 cut(s)	46, 113, 222, 229, 252, 293, 416
CviKI_1	RGCY	7 cut(s)	46, 113, 222, 229, 252, 293, 416
DdeI	CTNAG	3 cut(s)	36, 189, 383
DpnI	GATC	3 cut(s)	159, 198, 498
DpnII	GATC	3 cut(s)	157, 196, 496
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	3 cut(s)	179, 358, 455
FaiI	YATR	6 cut(s)	87, 177, 327, 356, 453, 551
FatI	CATG	3 cut(s)	175, 354, 451
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	150, 253
FokI	GGATG	2 cut(s)	18, 358
Fsp4HI	GCNGC	2 cut(s)	150, 253
FspBI	CTAG	3 cut(s)	360, 408, 506
GluI	GCNGC	2 cut(s)	150, 253
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	113, 222
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	3 cut(s)	141, 179, 265
Hin1I	GRCGYC	3 cut(s)	152, 276, 297
Hin1II	CATG	3 cut(s)	179, 358, 455
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	2 cut(s)	5, 216
HpaI	GTTAAC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	109, 445
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	39, 157
Hpy188III	TCNNGA	3 cut(s)	128, 167, 408
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	3 cut(s)	157, 281, 299
HpyAV	CCTTC	5 cut(s)	124, 325, 381, 471, 539
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	179, 185, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 278
HpyF3I	CTNAG	3 cut(s)	36, 189, 383
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	3 cut(s)	152, 276, 297
Hsp92II	CATG	3 cut(s)	179, 358, 455
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	157, 196, 496
LmnI	GCTCC	1 cut(s)	413
LpnPI	CCDG	9 cut(s)	28, 141, 148, 165, 258, 350, 449, 471, 541
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	3 cut(s)	360, 408, 506
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	316, 433
MalI	GATC	3 cut(s)	159, 198, 498
MboI	GATC	3 cut(s)	157, 196, 496
MboII	GAAGA	3 cut(s)	97, 199, 361
MflI	RGATCY	1 cut(s)	496
MluCI	AATT	3 cut(s)	10, 335, 368
MlyI	GAGTC	1 cut(s)	225
MmeI	TCCRAC	2 cut(s)	87, 135
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	180, 450
MspA1I	CMGCKG	2 cut(s)	213, 272
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	219, 278
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	3 cut(s)	157, 196, 496
NlaIII	CATG	3 cut(s)	179, 358, 455
NlaIV	GGNNCC	2 cut(s)	415, 443
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	2 cut(s)	179, 358
PaeR7I	CTCGAG	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	170
PceI	AGGCCT	1 cut(s)	113
PciI	ACATGT	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	151, 254
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PscI	ACATGT	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	551
PspN4I	GGNNCC	2 cut(s)	415, 443
PspPI	GGNCC	1 cut(s)	221
PspXI	VCTCGAGB	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	496
RseI	CAYNNNNRTG	2 cut(s)	180, 450
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	150, 253
Sau3AI	GATC	3 cut(s)	157, 196, 496
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	8 cut(s)	99, 122, 184, 231, 300, 507, 531, 543
SfaNI	GCATC	1 cut(s)	320
Sfr274I	CTCGAG	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	180, 450
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	10, 335, 368
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	6 cut(s)	149, 213, 270, 285, 309, 341
SspMI	CTAG	3 cut(s)	360, 408, 506
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	108, 231, 419
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	3 cut(s)	10, 335, 368
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	362
TspRI	CASTG	1 cut(s)	523
XapI	RAATTY	1 cut(s)	368
XbaI	TCTAGA	1 cut(s)	407
XceI	RCATGY	2 cut(s)	179, 358
XhoI	CTCGAG	1 cut(s)	230
XmaJI	CCTAGG	1 cut(s)	505
XspI	CTAG	3 cut(s)	360, 408, 506
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.