Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011755

Physical Location & Seq

Genomic Coordinates Reverse (-)

22509882 .. 22510578

Gene Structure 697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG117700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGATTCTAATTCCCCTCCTCATCATCATCATCCTCAGAACTGGCTCGGTTTCTCTCTTTCCAACCACTTCTCCTCTCCCCCTCATAACTCCCACCTCTCTCTCTTCGAGGCCTTCACCTCCTCTCCAGACGCCGGGGTTAACTCTGCGGCGTCGGATCATCATCAAGATGCACATGCAGGTGCAACTGAGACCGATCTCTCCATCTTCAGCGGAGTCGCCCCGAAGCTCGAGGACTTTCTCGGTGGTGGCTGCACCACCACCACCACCGCTGGCGTCGCAACTGCCACAGCCGACGTCATCACTACCGCATCGGTAACCCCGACGTCGCTCACTGCCTTCTCATCTACTAACGATCATCTCGCTGTGTCCGAAAATGAGATTTACGACTCCGAACTCAAAACCATAGCCGCTAGCTTCCTCCGTGGTTTCTCCACCGCCCCTATCGCCACCGCCACCGCCACCACTACTCTGCAGCACACCAAACCCCAAATCCACAACCACCCCGTGGGGACCACCGAAACCGCCACCATCAAGAAAACCGTGGACACCTTCGGTCAGCGCACCTCGATTTACCGTGGCGTTACAAGGTGGAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0040019 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045995 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

200

Amino Acids

21.15

Weight (kDa)

6.01

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57390
fragaria_vesca	FvH4_4g08100
malus_domestica	MD13G1252700.v1.1
prunus_persica	Prupe.1G084900_v2.0.a1
pyrus_communis	pycom13g22530
rosa_chinensis	RchiOBHm_Chr4g0401801
rosa_laevigata	RLG00000009119
rosa_multiflora	Rmu_sc0001405.1_g000041
rosa_roxburghii	Rroxscaffold_5G00346370
rosa_rugosa	Rorug04G0033300
rosa_samantha	Rh4AG109500 Rh4AG109600 Rh4BG103500 Rh4BG103600 Rh4CG117600 Rh4CG117700 Rh4DG101300 Rh4DG101400
rosa_wichuraiana	Rw4G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
AatII	GACGTC	2 cut(s)	300, 329
Acc36I	ACCTGC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	508
AciI	CCGC	9 cut(s)	149, 213, 270, 309, 411, 438, 453, 459, 525
AclWI	GGATC	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	193
AcyI	GRCGYC	5 cut(s)	132, 152, 276, 297, 326
AdeI	CACNNNGTG	1 cut(s)	508
AfiI	CCNNNNNNNGG	2 cut(s)	134, 508
AluBI	AGCT	3 cut(s)	229, 417, 599
AluI	AGCT	3 cut(s)	229, 417, 599
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	252, 475
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	109
AsuNHI	GCTAGC	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	239, 487
BccI	CCATC	2 cut(s)	212, 539
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	4 cut(s)	150, 253, 411, 476
BlsI	GCNGC	4 cut(s)	151, 254, 412, 477
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	513
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	2 cut(s)	160, 320
BmtI	GCTAGC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	162
BsaHI	GRCGYC	5 cut(s)	132, 152, 276, 297, 326
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	5 cut(s)	135, 424, 507, 543, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 508
Bse1I	ACTGG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	5 cut(s)	135, 424, 507, 543, 577
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	134, 508
BseMII	CTCAG	2 cut(s)	50, 180
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	3 cut(s)	9, 64, 112
BseXI	GCAGC	2 cut(s)	239, 487
BsgI	GTGCAG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	2 cut(s)	134, 508
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	157, 196, 355
BspACI	CCGC	9 cut(s)	149, 213, 270, 309, 411, 438, 453, 459, 525
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	49, 181
BspLI	GGNNCC	1 cut(s)	514
BspMAI	CTGCAG	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	5 cut(s)	135, 424, 507, 543, 577
BssMI	GATC	3 cut(s)	157, 196, 355
BssNI	GRCGYC	5 cut(s)	132, 152, 276, 297, 326
Bst4CI	ACNGT	2 cut(s)	544, 578
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	5 cut(s)	132, 152, 276, 297, 326
BstC8I	GCNNGC	2 cut(s)	274, 415
BstDEI	CTNAG	2 cut(s)	36, 189
BstDSI	CCRYGG	4 cut(s)	424, 507, 543, 577
BstEII	GGTNACC	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	3 cut(s)	160, 199, 358
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	3 cut(s)	157, 196, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 446
BstNSI	RCATGY	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	239, 487
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	4 cut(s)	424, 507, 543, 577
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	274, 415
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	1 cut(s)	513
CseI	GACGC	3 cut(s)	140, 141, 265
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	8 cut(s)	46, 113, 229, 252, 293, 410, 417, 599
CviKI_1	RGCY	8 cut(s)	46, 113, 229, 252, 293, 410, 417, 599
DdeI	CTNAG	2 cut(s)	36, 189
DpnI	GATC	3 cut(s)	159, 198, 357
DpnII	GATC	3 cut(s)	157, 196, 355
DraIII	CACNNNGTG	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco147I	AGGCCT	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	316
EcoO65I	GGTNACC	1 cut(s)	316
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	87, 177, 407
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	1 cut(s)	175
Fnu4HI	GCNGC	4 cut(s)	150, 253, 411, 476
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	4 cut(s)	150, 253, 411, 476
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	4 cut(s)	150, 253, 411, 476
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	3 cut(s)	140, 141, 265
HhaI	GCGC	1 cut(s)	564
Hin1I	GRCGYC	5 cut(s)	132, 152, 276, 297, 326
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	5, 216, 389
HpaI	GTTAAC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	142, 547
Hpy188I	TCNGA	4 cut(s)	39, 157, 373, 394
Hpy188III	TCNNGA	3 cut(s)	128, 167, 535
Hpy8I	GTNNAC	2 cut(s)	142, 547
Hpy99I	CGWCG	5 cut(s)	157, 281, 299, 328, 331
HpyAV	CCTTC	3 cut(s)	124, 349, 562
HpyCH4III	ACNGT	2 cut(s)	544, 578
HpyCH4IV	ACGT	2 cut(s)	297, 326
HpyCH4V	TGCA	5 cut(s)	173, 179, 185, 255, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 446
HpyF3I	CTNAG	2 cut(s)	36, 189
HpySE526I	ACGT	2 cut(s)	297, 326
Hsp92I	GRCGYC	5 cut(s)	132, 152, 276, 297, 326
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	562
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	157, 196, 355
LpnPI	CCDG	5 cut(s)	28, 141, 148, 165, 258
Lsp1109I	GCAGC	2 cut(s)	239, 487
LweI	GCATC	2 cut(s)	160, 320
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	2 cut(s)	297, 326
MaeIII	GTNAC	2 cut(s)	316, 583
MalI	GATC	3 cut(s)	159, 198, 357
MboI	GATC	3 cut(s)	157, 196, 355
MboII	GAAGA	2 cut(s)	97, 199
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	2 cut(s)	225, 383
MmeI	TCCRAC	2 cut(s)	87, 135
MseI	TTAA	2 cut(s)	141, 601
MslI	CAYNNNNRTG	2 cut(s)	168, 180
MspA1I	CMGCKG	2 cut(s)	213, 272
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	278, 446
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	3 cut(s)	157, 196, 355
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	179
PaeR7I	CTCGAG	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	170
PceI	AGGCCT	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	2 cut(s)	320, 369
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	151, 254, 412, 477
PleI	GAGTC	2 cut(s)	224, 383
PpsI	GAGTC	2 cut(s)	224, 383
PspEI	GGTNACC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	513
PspXI	VCTCGAGB	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	477
RseI	CAYNNNNRTG	2 cut(s)	168, 180
SaqAI	TTAA	2 cut(s)	141, 601
SatI	GCNGC	4 cut(s)	150, 253, 411, 476
Sau3AI	GATC	3 cut(s)	157, 196, 355
Sau96I	GGNCC	1 cut(s)	513
SchI	GAGTC	2 cut(s)	225, 383
ScrFI	CCNGG	1 cut(s)	136
SfaNI	GCATC	2 cut(s)	160, 320
SfcI	CTRYAG	1 cut(s)	473
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	513
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	168, 180
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	10
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	9 cut(s)	149, 213, 270, 309, 411, 438, 453, 459, 525
SspMI	CTAG	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	2 cut(s)	544, 578
TaiI	ACGT	2 cut(s)	300, 329
TaqI	TCGA	3 cut(s)	108, 231, 569
TaqII	GACCGA	2 cut(s)	209, 545
TasI	AATT	1 cut(s)	10
TauI	GCSGC	2 cut(s)	152, 413
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	141, 601
Tru9I	TTAA	2 cut(s)	141, 601
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	2 cut(s)	252, 475
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	513
XceI	RCATGY	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	230
XspI	CTAG	1 cut(s)	414
ZraI	GACGTC	2 cut(s)	298, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.