Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011755

Physical Location & Seq

Genomic Coordinates Reverse (-)

23732392 .. 23733555

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG109500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGAATATGTCTAGGCAGGAATTTGTTGCTTCCCTTAGAAGGAAAAGTAGTGGATTTTCTAGAGGAGCCTCGATTTACAGAGGGGTGACAAGGCACCATCAACATGGTAGATGGCAGGCAAGAATAGGAAGGGTTGCTGGCAACAAAGATCTCTACCTAGGCACTTTCAGTACGCAAGAAGAAGCTGCCGAGGCCTATGACATTGCAGCCATCAAGTTCCGAGGCTTAAATGCGGTCACTAACTTCGATATGAGCCGCTACGATGTGAAGAGCATTGCCAACAGCAACCTCCCGATCGGAGGAATGTCTGGAAAATCCAAGAACTCATCCGATCAATCCCTCTCTGCTGATAGCAAGAGCCTTGATGATAGAGACCTCTCCTCTGCATCCTCCGTAACCTTTGCGTCGTCATCTCATCAGCCTAGTAATTCCTCCACATTGAGCTTTGCAATTCCCATCAAACAAGACCCGTCCTCAGAGTACTGGTCCAATATCTTTGGGTACCATGTGCCAAACAACAACCCTTCCCTAAACAATGTCAGGAACCCTAACAGTGTTGGGATCGTACCAACCTATTTTCACAGCAACATGGATTTCTCTGCGACATCTAGTACTGCTACTACAACCTCGGAAACCAACAATGGGTTATTCTACAGTGGGGGATACAACGTCCATGGCCAACAGCAGCAGCAGCAACAACAACAACAAAGTACTAGCAGTGGTACTAATAATTCAATCCCCTTCTCCACACCTCTTGGTTTAAGTAGTAACATGGGTTATGATCAAGGTTCTTCTGGTTATGGAACATGGATAGGGCCAAGTCTTAATCTCTTTCAGACTCCAATTTTTGGCATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0040019 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045995 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

287

Amino Acids

31.18

Weight (kDa)

9.05

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	27 - 76	2.5e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57390
fragaria_vesca	FvH4_4g08100
malus_domestica	MD13G1252700.v1.1
prunus_persica	Prupe.1G084900_v2.0.a1
pyrus_communis	pycom13g22530
rosa_chinensis	RchiOBHm_Chr4g0401801
rosa_laevigata	RLG00000009119
rosa_multiflora	Rmu_sc0001405.1_g000041
rosa_roxburghii	Rroxscaffold_5G00346370
rosa_rugosa	Rorug04G0033300
rosa_samantha	Rh4AG109500 Rh4AG109600 Rh4BG103500 Rh4BG103600 Rh4CG117600 Rh4CG117700 Rh4DG101300 Rh4DG101400
rosa_wichuraiana	Rw4G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	504
AccB1I	GGYRCC	2 cut(s)	96, 504
AccB7I	CCANNNNNTGG	1 cut(s)	851
AciI	CCGC	2 cut(s)	236, 259
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	23
AfaI	GTAC	7 cut(s)	175, 485, 506, 570, 616, 715, 727
AfiI	CCNNNNNNNGG	4 cut(s)	42, 302, 645, 851
AgsI	TTSAA	1 cut(s)	738
AluBI	AGCT	2 cut(s)	188, 447
AluI	AGCT	2 cut(s)	188, 447
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	3 cut(s)	195, 679, 818
ApeKI	GCWGC	5 cut(s)	188, 209, 688, 691, 694
ApoI	RAATTY	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	504
AspA2I	CCTAGG	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	489, 818
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	489
AvrII	CCTAGG	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	681
BanI	GGYRCC	2 cut(s)	96, 504
BbvI	GCAGC	5 cut(s)	175, 221, 700, 703, 706
BccI	CCATC	4 cut(s)	108, 108, 221, 467
BciVI	GTATCC	1 cut(s)	659
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	6 cut(s)	15, 63, 161, 426, 612, 717
BfmI	CTRYAG	1 cut(s)	655
BfuI	GTATCC	1 cut(s)	659
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	6 cut(s)	189, 210, 259, 689, 692, 695
BlnI	CCTAGG	1 cut(s)	160
BlsI	GCNGC	6 cut(s)	190, 211, 260, 690, 693, 696
BmcAI	AGTACT	3 cut(s)	485, 616, 715
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	489, 818
BmiI	GGNNCC	4 cut(s)	70, 98, 506, 548
BmsI	GCATC	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	5 cut(s)	160, 192, 223, 630, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 302, 645, 851
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	2 cut(s)	204, 276
BseDI	CCNNGG	5 cut(s)	160, 192, 223, 630, 676
BseGI	GGATG	2 cut(s)	329, 389
BseLI	CCNNNNNNNGG	4 cut(s)	42, 302, 645, 851
BseMI	GCAATG	2 cut(s)	204, 276
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	2 cut(s)	81, 373
BseXI	GCAGC	5 cut(s)	175, 221, 700, 703, 706
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	197, 681, 820
BshNI	GGYRCC	2 cut(s)	96, 504
BsiEI	CGRYCG	1 cut(s)	300
BslI	CCNNNNNNNGG	4 cut(s)	42, 302, 645, 851
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	197, 681, 820
Bso31I	GGTCTC	1 cut(s)	369
Bsp143I	GATC	5 cut(s)	151, 297, 334, 564, 784
Bsp19I	CCATGG	1 cut(s)	676
BspACI	CCGC	2 cut(s)	236, 259
BspANI	GGCC	3 cut(s)	197, 681, 820
BspCNI	CTCAG	1 cut(s)	491
BspLI	GGNNCC	4 cut(s)	70, 98, 506, 548
BspPI	GGATC	1 cut(s)	572
BspQI	GCTCTTC	1 cut(s)	266
BspT107I	GGYRCC	2 cut(s)	96, 504
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	204, 276
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	5 cut(s)	160, 192, 223, 630, 676
BssMI	GATC	5 cut(s)	151, 297, 334, 564, 784
BssT1I	CCWWGG	2 cut(s)	160, 676
Bst4CI	ACNGT	2 cut(s)	557, 659
Bst6I	CTCTTC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	120, 142
BstDEI	CTNAG	2 cut(s)	38, 478
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	2 cut(s)	329, 389
BstKTI	GATC	5 cut(s)	154, 300, 337, 567, 787
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	5 cut(s)	151, 297, 334, 564, 784
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 694
BstSFI	CTRYAG	1 cut(s)	655
BstV1I	GCAGC	5 cut(s)	175, 221, 700, 703, 706
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	659
BsuRI	GGCC	3 cut(s)	197, 681, 820
BtgI	CCRYGG	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	329, 389
BtsI	GCAGTG	1 cut(s)	727
BtsIMutI	CAGTG	3 cut(s)	562, 664, 727
Cac8I	GCNNGC	2 cut(s)	120, 142
Cfr13I	GGNCC	2 cut(s)	489, 818
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	7 cut(s)	174, 484, 505, 569, 615, 714, 726
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviAII	CATG	7 cut(s)	107, 509, 592, 677, 775, 810, 856
CviQI	GTAC	7 cut(s)	174, 484, 505, 569, 615, 714, 726
DdeI	CTNAG	2 cut(s)	38, 478
DpnI	GATC	5 cut(s)	153, 299, 336, 566, 786
DpnII	GATC	5 cut(s)	151, 297, 334, 564, 784
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	160, 676
Eco147I	AGGCCT	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	489
EcoT14I	CCWWGG	2 cut(s)	160, 676
ErhI	CCWWGG	2 cut(s)	160, 676
FaeI	CATG	7 cut(s)	110, 512, 595, 680, 778, 813, 859
FatI	CATG	7 cut(s)	106, 508, 591, 676, 774, 809, 855
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	6 cut(s)	189, 210, 259, 689, 692, 695
FokI	GGATG	2 cut(s)	316, 376
Fsp4HI	GCNGC	6 cut(s)	189, 210, 259, 689, 692, 695
FspBI	CTAG	6 cut(s)	15, 63, 161, 426, 612, 717
GluI	GCNGC	6 cut(s)	189, 210, 259, 689, 692, 695
HaeIII	GGCC	3 cut(s)	197, 681, 820
HgaI	GACGC	1 cut(s)	396
Hin1II	CATG	7 cut(s)	110, 512, 595, 680, 778, 813, 859
HinfI	GANTC	1 cut(s)	841
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	6 cut(s)	224, 302, 334, 481, 634, 840
Hpy188III	TCNNGA	4 cut(s)	63, 295, 312, 544
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	4 cut(s)	36, 126, 537, 754
HpyCH4III	ACNGT	2 cut(s)	557, 659
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	3 cut(s)	209, 389, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 694
HpyF3I	CTNAG	2 cut(s)	38, 478
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	7 cut(s)	110, 512, 595, 680, 778, 813, 859
KpnI	GGTACC	1 cut(s)	508
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	5 cut(s)	151, 297, 334, 564, 784
LguI	GCTCTTC	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	7 cut(s)	5, 104, 126, 297, 472, 529, 783
Lsp1109I	GCAGC	5 cut(s)	175, 221, 700, 703, 706
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	6 cut(s)	15, 63, 161, 426, 612, 717
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	4 cut(s)	88, 238, 397, 770
MalI	GATC	5 cut(s)	153, 299, 336, 566, 786
MboI	GATC	5 cut(s)	151, 297, 334, 564, 784
MboII	GAAGA	4 cut(s)	16, 194, 283, 786
MflI	RGATCY	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	5 cut(s)	23, 430, 453, 733, 846
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	1 cut(s)	835
Mox20I	TGGCCA	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	3 cut(s)	230, 764, 828
MslI	CAYNNNNRTG	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	681
MwoI	GCNNNNNNNGC	2 cut(s)	194, 694
NcoI	CCATGG	1 cut(s)	676
NdeII	GATC	5 cut(s)	151, 297, 334, 564, 784
NlaIII	CATG	7 cut(s)	110, 512, 595, 680, 778, 813, 859
NlaIV	GGNNCC	4 cut(s)	70, 98, 506, 548
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	88, 238
PceI	AGGCCT	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	851
PkrI	GCNGC	6 cut(s)	190, 211, 260, 690, 693, 696
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	1 cut(s)	835
PpsI	GAGTC	1 cut(s)	835
PspN4I	GGNNCC	4 cut(s)	70, 98, 506, 548
PspPI	GGNCC	2 cut(s)	489, 818
PsuI	RGATCY	1 cut(s)	151
PvuI	CGATCG	1 cut(s)	300
RsaI	GTAC	7 cut(s)	175, 485, 506, 570, 616, 715, 727
RsaNI	GTAC	7 cut(s)	174, 484, 505, 569, 615, 714, 726
RseI	CAYNNNNRTG	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	230, 764, 828
SatI	GCNGC	6 cut(s)	189, 210, 259, 689, 692, 695
Sau3AI	GATC	5 cut(s)	151, 297, 334, 564, 784
Sau96I	GGNCC	2 cut(s)	489, 818
ScaI	AGTACT	3 cut(s)	485, 616, 715
SchI	GAGTC	1 cut(s)	835
SfaNI	GCATC	1 cut(s)	398
SfcI	CTRYAG	1 cut(s)	655
SinI	GGWCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	5 cut(s)	23, 430, 453, 733, 846
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	2 cut(s)	236, 259
SspMI	CTAG	6 cut(s)	15, 63, 161, 426, 612, 717
StuI	AGGCCT	1 cut(s)	197
StyI	CCWWGG	2 cut(s)	160, 676
TaaI	ACNGT	2 cut(s)	557, 659
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	2 cut(s)	74, 249
TasI	AATT	5 cut(s)	23, 430, 453, 733, 846
TatI	WGTACW	3 cut(s)	483, 614, 713
TauI	GCSGC	1 cut(s)	261
Tru1I	TTAA	3 cut(s)	230, 764, 828
Tru9I	TTAA	3 cut(s)	230, 764, 828
TscAI	CASTG	3 cut(s)	562, 664, 727
TseFI	GTSAC	2 cut(s)	88, 238
TseI	GCWGC	5 cut(s)	188, 209, 688, 691, 694
Tsp45I	GTSAC	2 cut(s)	88, 238
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	3 cut(s)	562, 664, 727
Van91I	CCANNNNNTGG	1 cut(s)	851
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	1 cut(s)	23
XbaI	TCTAGA	1 cut(s)	62
XmaJI	CCTAGG	1 cut(s)	160
XspI	CTAG	6 cut(s)	15, 63, 161, 426, 612, 717
ZrmI	AGTACT	3 cut(s)	485, 616, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.