Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011755

Physical Location & Seq

Genomic Coordinates Reverse (-)

22507698 .. 22509226

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG117600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGTCTCATCAAGTTAAGATCCAGCATTGGATTTTTTATGTTACTGTATCAGAAATATTCTTTGCATGAATGCATCATAATGTTCAGATCTTACTTAGATTCTTATTGCTCAAATTTAATTGTTTATTCAACTTTTATGAATTTATGTACTAAAGGTGGTTACGATAAAGAAGACAAAGCAGCAAGAGCCTACGATCTAGCAGCTCTCAAGTACTGGGGTCCGACCACCACCACAAATTTTCCGGTTACCAACTATGAGAAGGAATTGGCGGGGATGAAGAATATGTCTAGGCAGGAATTTGTTGCTTCCCTTAGAAGGAAAAGTAGTGGATTTTCTAGAGGAGCCTCGATTTACAGAGGGGTGACAAGGCACCATCAACATGGTAGATGGCAGGCAAGAATAGGAAGGGTTGCTGGCAACAAAGATCTCTACCTAGGCACTTTCAGTACGCAAGAAGAAGCTGCCGAGGCCTATGACATTGCAGCCATCAAGTTCCGAGGCTTGAATGCAGTCACTAACTTCGATATGAGCCGCTACGATGTGAAGAGCATTGCCAACAGCAACCTCCCGATCGGAGGAATGTCTGGAAAATCCAAGAACTCTTCCGATCAATCCCTCTCTGCTGATAGCAAGAGCCTTGATGATAGAGACCTCTCCTCTGCATCCTCCGTAACATTTGCGTCGTCATCTCATCAGCCTAGTAATTCCTCCACATTGAGCTTTGCAATTCCCATCAAACAAGACCCGTCCTCAGAGTACTGGTCCAATATCTTTGGGTACCATGTGCCAAACAACAACCCTTCCCTAAACAATGTCAGGAACCCTAACAGTGTTGGGATCGCACCAACCTATTTTCACAGCAACATGGATTTCTCTGCGACATCTAGTACTGCTACTACAACCTCGGAAACCAACAATGGGTTATTCTACAGTGGGGGATACAACGTCCATGGCCAACAGCAGCAGCAACAACAACAACAACAACAAAGTACTAGCAGTGGTACTAATAATTCAATCCCCTTCTCCACACCTCTTGGTTTAAGTAGTAACATGGGTTATGATCAAGGTTCTTCTGGTTATGGAACATGGATAGGGCCAAGTCTTAATCTCTTTCAGACTCCAATTTTTGGCATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0040019 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045995 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

380

Amino Acids

41.86

Weight (kDa)

8.9

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	119 - 168	3.8e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57390
fragaria_vesca	FvH4_4g08100
malus_domestica	MD13G1252700.v1.1
prunus_persica	Prupe.1G084900_v2.0.a1
pyrus_communis	pycom13g22530
rosa_chinensis	RchiOBHm_Chr4g0401801
rosa_laevigata	RLG00000009119
rosa_multiflora	Rmu_sc0001405.1_g000041
rosa_roxburghii	Rroxscaffold_5G00346370
rosa_rugosa	Rorug04G0033300
rosa_samantha	Rh4AG109500 Rh4AG109600 Rh4BG103500 Rh4BG103600 Rh4CG117600 Rh4CG117700 Rh4DG101300 Rh4DG101400
rosa_wichuraiana	Rw4G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	780
AccB1I	GGYRCC	2 cut(s)	372, 780
AccB7I	CCANNNNNTGG	1 cut(s)	1130
AciI	CCGC	2 cut(s)	272, 535
AclWI	GGATC	2 cut(s)	15, 848
AcoI	YGGCCR	1 cut(s)	955
AcsI	RAATTY	4 cut(s)	115, 142, 238, 299
AfaI	GTAC	8 cut(s)	151, 215, 451, 761, 782, 892, 994, 1006
AfiI	CCNNNNNNNGG	4 cut(s)	318, 578, 921, 1130
AgsI	TTSAA	3 cut(s)	132, 508, 1017
AluBI	AGCT	3 cut(s)	206, 464, 723
AluI	AGCT	3 cut(s)	206, 464, 723
Alw26I	GTCTC	2 cut(s)	11, 645
AlwI	GGATC	2 cut(s)	15, 848
AoxI	GGCC	3 cut(s)	471, 955, 1097
ApeKI	GCWGC	6 cut(s)	182, 203, 464, 485, 964, 967
ApoI	RAATTY	4 cut(s)	115, 142, 238, 299
Asp718I	GGTACC	1 cut(s)	780
AspA2I	CCTAGG	1 cut(s)	436
AspS9I	GGNCC	3 cut(s)	221, 765, 1097
AsuHPI	GGTGA	1 cut(s)	376
AvaII	GGWCC	2 cut(s)	221, 765
AvrII	CCTAGG	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	957
BanI	GGYRCC	2 cut(s)	372, 780
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	6 cut(s)	194, 215, 451, 497, 976, 979
BccI	CCATC	4 cut(s)	384, 384, 497, 743
BciVI	GTATCC	1 cut(s)	935
BclI	TGATCA	1 cut(s)	1063
BcoDI	GTCTC	2 cut(s)	11, 645
BfaI	CTAG	7 cut(s)	200, 291, 339, 437, 702, 888, 996
BfmI	CTRYAG	1 cut(s)	931
BfuI	GTATCC	1 cut(s)	935
BglII	AGATCT	2 cut(s)	89, 427
BisI	GCNGC	7 cut(s)	183, 204, 465, 486, 535, 965, 968
BlnI	CCTAGG	1 cut(s)	436
BlsI	GCNGC	7 cut(s)	184, 205, 466, 487, 536, 966, 969
BmcAI	AGTACT	4 cut(s)	215, 761, 892, 994
Bme18I	GGWCC	2 cut(s)	221, 765
BmgT120I	GGNCC	3 cut(s)	221, 765, 1097
BmiI	GGNNCC	5 cut(s)	222, 346, 374, 782, 824
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	2 cut(s)	84, 674
BmuI	ACTGGG	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	194
BsaI	GGTCTC	2 cut(s)	11, 645
BsaJI	CCNNGG	5 cut(s)	436, 468, 499, 906, 952
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	4 cut(s)	318, 578, 921, 1130
Bse1I	ACTGG	2 cut(s)	221, 767
Bse3DI	GCAATG	2 cut(s)	480, 552
BseDI	CCNNGG	5 cut(s)	436, 468, 499, 906, 952
BseGI	GGATG	2 cut(s)	282, 665
BseLI	CCNNNNNNNGG	4 cut(s)	318, 578, 921, 1130
BseMI	GCAATG	2 cut(s)	480, 552
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	2 cut(s)	221, 767
BseRI	GAGGAG	2 cut(s)	357, 649
BseXI	GCAGC	6 cut(s)	194, 215, 451, 497, 976, 979
Bsh1285I	CGRYCG	1 cut(s)	576
BshFI	GGCC	3 cut(s)	473, 957, 1099
BshNI	GGYRCC	2 cut(s)	372, 780
BsiEI	CGRYCG	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	4 cut(s)	318, 578, 921, 1130
BsmAI	GTCTC	2 cut(s)	11, 645
BsmI	GAATGC	2 cut(s)	77, 514
BsnI	GGCC	3 cut(s)	473, 957, 1099
Bso31I	GGTCTC	2 cut(s)	11, 645
Bsp143I	GATC	8 cut(s)	20, 89, 196, 427, 573, 610, 840, 1063
Bsp19I	CCATGG	1 cut(s)	952
BspACI	CCGC	2 cut(s)	272, 535
BspANI	GGCC	3 cut(s)	473, 957, 1099
BspCNI	CTCAG	1 cut(s)	767
BspLI	GGNNCC	5 cut(s)	222, 346, 374, 782, 824
BspPI	GGATC	2 cut(s)	15, 848
BspQI	GCTCTTC	1 cut(s)	542
BspT107I	GGYRCC	2 cut(s)	372, 780
BspTNI	GGTCTC	2 cut(s)	11, 645
BsrDI	GCAATG	2 cut(s)	480, 552
BsrI	ACTGG	2 cut(s)	221, 767
BssECI	CCNNGG	5 cut(s)	436, 468, 499, 906, 952
BssMI	GATC	8 cut(s)	20, 89, 196, 427, 573, 610, 840, 1063
BssT1I	CCWWGG	2 cut(s)	436, 952
Bst4CI	ACNGT	3 cut(s)	48, 833, 935
Bst6I	CTCTTC	2 cut(s)	542, 610
BstC8I	GCNNGC	2 cut(s)	396, 418
BstDEI	CTNAG	3 cut(s)	97, 314, 754
BstDSI	CCRYGG	1 cut(s)	952
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	282, 665
BstKTI	GATC	8 cut(s)	23, 92, 199, 430, 576, 613, 843, 1066
BstMAI	GTCTC	2 cut(s)	11, 645
BstMBI	GATC	8 cut(s)	20, 89, 196, 427, 573, 610, 840, 1063
BstMCI	CGRYCG	1 cut(s)	576
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 470
BstPI	GGTNACC	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	931
BstV1I	GCAGC	6 cut(s)	194, 215, 451, 497, 976, 979
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	3 cut(s)	20, 89, 427
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	3 cut(s)	20, 89, 427
BsuI	GTATCC	1 cut(s)	935
BsuRI	GGCC	3 cut(s)	473, 957, 1099
BtgI	CCRYGG	1 cut(s)	952
BtsCI	GGATG	2 cut(s)	282, 665
BtsI	GCAGTG	1 cut(s)	1006
BtsIMutI	CAGTG	3 cut(s)	838, 940, 1006
Cac8I	GCNNGC	2 cut(s)	396, 418
Cfr13I	GGNCC	3 cut(s)	221, 765, 1097
CseI	GACGC	1 cut(s)	672
Csp6I	GTAC	8 cut(s)	150, 214, 450, 760, 781, 891, 993, 1005
CspCI	CAANNNNNGTGG	2 cut(s)	1018, 1053
CviAII	CATG	8 cut(s)	68, 383, 785, 868, 953, 1054, 1089, 1135
CviQI	GTAC	8 cut(s)	150, 214, 450, 760, 781, 891, 993, 1005
DdeI	CTNAG	3 cut(s)	97, 314, 754
DpnI	GATC	8 cut(s)	22, 91, 198, 429, 575, 612, 842, 1065
DpnII	GATC	8 cut(s)	20, 89, 196, 427, 573, 610, 840, 1063
EaeI	YGGCCR	1 cut(s)	955
Eam1104I	CTCTTC	2 cut(s)	542, 610
EarI	CTCTTC	2 cut(s)	542, 610
Eco130I	CCWWGG	2 cut(s)	436, 952
Eco147I	AGGCCT	1 cut(s)	473
Eco31I	GGTCTC	2 cut(s)	11, 645
Eco47I	GGWCC	2 cut(s)	221, 765
Eco91I	GGTNACC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	436, 952
EcoT22I	ATGCAT	1 cut(s)	77
ErhI	CCWWGG	2 cut(s)	436, 952
FaeI	CATG	8 cut(s)	71, 386, 788, 871, 956, 1057, 1092, 1138
FatI	CATG	8 cut(s)	67, 382, 784, 867, 952, 1053, 1088, 1134
FauI	CCCGC	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	1063
Fnu4HI	GCNGC	7 cut(s)	183, 204, 465, 486, 535, 965, 968
FokI	GGATG	2 cut(s)	289, 652
Fsp4HI	GCNGC	7 cut(s)	183, 204, 465, 486, 535, 965, 968
FspBI	CTAG	7 cut(s)	200, 291, 339, 437, 702, 888, 996
GluI	GCNGC	7 cut(s)	183, 204, 465, 486, 535, 965, 968
HaeIII	GGCC	3 cut(s)	473, 957, 1099
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	1 cut(s)	672
Hin1II	CATG	8 cut(s)	71, 386, 788, 871, 956, 1057, 1092, 1138
HinfI	GANTC	2 cut(s)	101, 1120
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	376
Hpy188I	TCNGA	9 cut(s)	54, 89, 225, 500, 578, 610, 757, 910, 1119
Hpy188III	TCNNGA	4 cut(s)	339, 571, 588, 820
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	5 cut(s)	256, 312, 402, 813, 1033
HpyCH4III	ACNGT	3 cut(s)	48, 833, 935
HpyCH4IV	ACGT	1 cut(s)	948
HpyCH4V	TGCA	6 cut(s)	67, 75, 485, 512, 665, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 470
HpyF3I	CTNAG	3 cut(s)	97, 314, 754
HpySE526I	ACGT	1 cut(s)	948
Hsp92II	CATG	8 cut(s)	71, 386, 788, 871, 956, 1057, 1092, 1138
KpnI	GGTACC	1 cut(s)	784
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	8 cut(s)	20, 89, 196, 427, 573, 610, 840, 1063
LguI	GCTCTTC	1 cut(s)	542
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	6 cut(s)	194, 215, 451, 497, 976, 979
LweI	GCATC	2 cut(s)	84, 674
MaeI	CTAG	7 cut(s)	200, 291, 339, 437, 702, 888, 996
MaeII	ACGT	1 cut(s)	948
MaeIII	GTNAC	7 cut(s)	42, 161, 247, 364, 514, 673, 1049
MalI	GATC	8 cut(s)	22, 91, 198, 429, 575, 612, 842, 1065
MboI	GATC	8 cut(s)	20, 89, 196, 427, 573, 610, 840, 1063
MboII	GAAGA	6 cut(s)	185, 292, 470, 559, 597, 1065
MflI	RGATCY	3 cut(s)	20, 89, 427
MlsI	TGGCCA	1 cut(s)	957
MluNI	TGGCCA	1 cut(s)	957
MlyI	GAGTC	1 cut(s)	1114
MmeI	TCCRAC	1 cut(s)	248
Mox20I	TGGCCA	1 cut(s)	957
Mph1103I	ATGCAT	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	957
MseI	TTAA	4 cut(s)	17, 119, 1043, 1107
MslI	CAYNNNNRTG	2 cut(s)	80, 381
Msp20I	TGGCCA	1 cut(s)	957
MspI	CCGG	1 cut(s)	245
Mva1269I	GAATGC	2 cut(s)	77, 514
MwoI	GCNNNNNNNGC	2 cut(s)	188, 470
NcoI	CCATGG	1 cut(s)	952
NdeII	GATC	8 cut(s)	20, 89, 196, 427, 573, 610, 840, 1063
NlaIII	CATG	8 cut(s)	71, 386, 788, 871, 956, 1057, 1092, 1138
NlaIV	GGNNCC	5 cut(s)	222, 346, 374, 782, 824
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	364, 514
NsiI	ATGCAT	1 cut(s)	77
PceI	AGGCCT	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	542
PctI	GAATGC	2 cut(s)	77, 514
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	1130
PkrI	GCNGC	7 cut(s)	184, 205, 466, 487, 536, 966, 969
Ple19I	CGATCG	1 cut(s)	576
PleI	GAGTC	1 cut(s)	1114
PpsI	GAGTC	1 cut(s)	1114
PspEI	GGTNACC	1 cut(s)	247
PspN4I	GGNNCC	5 cut(s)	222, 346, 374, 782, 824
PspPI	GGNCC	3 cut(s)	221, 765, 1097
PsuI	RGATCY	3 cut(s)	20, 89, 427
PvuI	CGATCG	1 cut(s)	576
RsaI	GTAC	8 cut(s)	151, 215, 451, 761, 782, 892, 994, 1006
RsaNI	GTAC	8 cut(s)	150, 214, 450, 760, 781, 891, 993, 1005
RseI	CAYNNNNRTG	2 cut(s)	80, 381
SapI	GCTCTTC	1 cut(s)	542
SaqAI	TTAA	4 cut(s)	17, 119, 1043, 1107
SatI	GCNGC	7 cut(s)	183, 204, 465, 486, 535, 965, 968
Sau3AI	GATC	8 cut(s)	20, 89, 196, 427, 573, 610, 840, 1063
Sau96I	GGNCC	3 cut(s)	221, 765, 1097
ScaI	AGTACT	4 cut(s)	215, 761, 892, 994
SchI	GAGTC	1 cut(s)	1114
SfaNI	GCATC	2 cut(s)	84, 674
SfcI	CTRYAG	1 cut(s)	931
SinI	GGWCC	2 cut(s)	221, 765
SmiMI	CAYNNNNRTG	2 cut(s)	80, 381
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	2 cut(s)	272, 535
SspI	AATATT	1 cut(s)	59
SspMI	CTAG	7 cut(s)	200, 291, 339, 437, 702, 888, 996
StuI	AGGCCT	1 cut(s)	473
StyI	CCWWGG	2 cut(s)	436, 952
TaaI	ACNGT	3 cut(s)	48, 833, 935
TaiI	ACGT	1 cut(s)	951
TaqI	TCGA	2 cut(s)	350, 525
TatI	WGTACW	5 cut(s)	149, 213, 759, 890, 992
TauI	GCSGC	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	4 cut(s)	17, 119, 1043, 1107
Tru9I	TTAA	4 cut(s)	17, 119, 1043, 1107
TscAI	CASTG	3 cut(s)	838, 940, 1006
TseFI	GTSAC	2 cut(s)	364, 514
TseI	GCWGC	6 cut(s)	182, 203, 464, 485, 964, 967
Tsp45I	GTSAC	2 cut(s)	364, 514
TspDTI	ATGAA	3 cut(s)	84, 155, 293
TspGWI	ACGGA	1 cut(s)	661
TspRI	CASTG	3 cut(s)	838, 940, 1006
Van91I	CCANNNNNTGG	1 cut(s)	1130
VpaK11BI	GGWCC	2 cut(s)	221, 765
XapI	RAATTY	4 cut(s)	115, 142, 238, 299
XbaI	TCTAGA	1 cut(s)	338
XmaJI	CCTAGG	1 cut(s)	436
XspI	CTAG	7 cut(s)	200, 291, 339, 437, 702, 888, 996
ZrmI	AGTACT	4 cut(s)	215, 761, 892, 994
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.