Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011755

Physical Location & Seq

Genomic Coordinates Reverse (-)

15419867 .. 15420487

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG101300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGCCGCTACGATGTGAAGAGCATTGCCAACAGCAACCTCCCGATCGGAGGAATGTCTGGAAAATCCAAGAACTCATCCGATCAGTCCCTCTCTGCTGATAGCAAGAACCTTGATGATAGAGACCTCTCCTCTGCATCCTCCGTAACCTTTGCGTCGTCATCTCATCAGCCTAGTAATTCCTCCACATTGAGCTTTGCAATTCCCATCAAACAAGACCCGTCCTCAGAGTACTGGTCCAATATCTTTGGGTACCATGTCCCAAACAACAACCCTTCCCTAAACAATGTCAGGAACCCTAACAGTGTTGGGATCGCACCAACCTATTTTCACAGCAACATGGATTTCTCTGCGACATCTAGTGCTGCTACTACAACCTCGGAAACCAACAATGGGTTATTCTACAGTGGGGGATACAACGTCCATGGCCAACAGCAGCAGCAACAACAACAACAACAACAACAACAAAGTACTAGCAGTGGTACTAATAATTCAATCCCCTTCTCCACACCTCTTGGTTTAAGTAGTAACATGGGTTATGATCAAGGTTCTTCTGGTTATGGAACATGGATAGGGTCAAGTCTTAATCTCTTTCAGACTCCAATTTTTGGCATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0040019 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045995 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

206

Amino Acids

22.05

Weight (kDa)

5.4

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57390
fragaria_vesca	FvH4_4g08100
malus_domestica	MD13G1252700.v1.1
prunus_persica	Prupe.1G084900_v2.0.a1
pyrus_communis	pycom13g22530
rosa_chinensis	RchiOBHm_Chr4g0401801
rosa_laevigata	RLG00000009119
rosa_multiflora	Rmu_sc0001405.1_g000041
rosa_roxburghii	Rroxscaffold_5G00346370
rosa_rugosa	Rorug04G0033300
rosa_samantha	Rh4AG109500 Rh4AG109600 Rh4BG103500 Rh4BG103600 Rh4CG117600 Rh4CG117700 Rh4DG101300 Rh4DG101400
rosa_wichuraiana	Rw4G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	608
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	427
AfaI	GTAC	4 cut(s)	233, 254, 472, 484
AfiI	CCNNNNNNNGG	3 cut(s)	50, 393, 608
AgsI	TTSAA	1 cut(s)	495
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	365, 436, 439
Asp718I	GGTACC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	352, 448, 451
BccI	CCATC	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	3 cut(s)	174, 360, 474
BfmI	CTRYAG	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	4 cut(s)	7, 366, 437, 440
BlsI	GCNGC	4 cut(s)	8, 367, 438, 441
BmcAI	AGTACT	2 cut(s)	233, 472
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	2 cut(s)	254, 296
BmsI	GCATC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	378, 424
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 393, 608
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	378, 424
BseGI	GGATG	2 cut(s)	77, 137
BseLI	CCNNNNNNNGG	3 cut(s)	50, 393, 608
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	352, 448, 451
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	429
BshNI	GGYRCC	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	73, 245
BslI	CCNNNNNNNGG	3 cut(s)	50, 393, 608
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	73, 245
BsnI	GGCC	1 cut(s)	429
Bso31I	GGTCTC	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	45, 82, 312, 541
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	254, 296
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	378, 424
BssMI	GATC	4 cut(s)	45, 82, 312, 541
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	2 cut(s)	305, 407
Bst6I	CTCTTC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	226
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	77, 137
BstKTI	GATC	4 cut(s)	48, 85, 315, 544
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	4 cut(s)	45, 82, 312, 541
BstMCI	CGRYCG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	352, 448, 451
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	77, 137
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	3 cut(s)	310, 412, 484
Cfr13I	GGNCC	1 cut(s)	237
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	4 cut(s)	232, 253, 471, 483
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	6 cut(s)	257, 340, 425, 532, 567, 613
CviJI	RGCY	4 cut(s)	6, 172, 195, 429
CviKI_1	RGCY	4 cut(s)	6, 172, 195, 429
CviQI	GTAC	4 cut(s)	232, 253, 471, 483
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	4 cut(s)	47, 84, 314, 543
DpnII	GATC	4 cut(s)	45, 82, 312, 541
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	6 cut(s)	260, 343, 428, 535, 570, 616
FaiI	YATR	8 cut(s)	258, 341, 426, 533, 540, 561, 568, 614
FaqI	GGGAC	2 cut(s)	73, 245
FatI	CATG	6 cut(s)	256, 339, 424, 531, 566, 612
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	4 cut(s)	7, 366, 437, 440
FokI	GGATG	2 cut(s)	64, 124
Fsp4HI	GCNGC	4 cut(s)	7, 366, 437, 440
FspBI	CTAG	3 cut(s)	174, 360, 474
GluI	GCNGC	4 cut(s)	7, 366, 437, 440
HaeIII	GGCC	1 cut(s)	429
HgaI	GACGC	1 cut(s)	144
Hin1II	CATG	6 cut(s)	260, 343, 428, 535, 570, 616
HinfI	GANTC	1 cut(s)	598
Hpy188I	TCNGA	5 cut(s)	50, 82, 229, 382, 597
Hpy188III	TCNNGA	3 cut(s)	43, 60, 292
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	285, 511
HpyCH4III	ACNGT	2 cut(s)	305, 407
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	137, 200
HpyF3I	CTNAG	1 cut(s)	226
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	6 cut(s)	260, 343, 428, 535, 570, 616
KpnI	GGTACC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	45, 82, 312, 541
LguI	GCTCTTC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	45, 220, 277, 540
Lsp1109I	GCAGC	3 cut(s)	352, 448, 451
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	3 cut(s)	174, 360, 474
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	145, 527
MalI	GATC	4 cut(s)	47, 84, 314, 543
MboI	GATC	4 cut(s)	45, 82, 312, 541
MboII	GAAGA	2 cut(s)	31, 543
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	4 cut(s)	178, 201, 490, 603
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	592
Mox20I	TGGCCA	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	2 cut(s)	521, 585
Msp20I	TGGCCA	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	4 cut(s)	45, 82, 312, 541
NlaIII	CATG	6 cut(s)	260, 343, 428, 535, 570, 616
NlaIV	GGNNCC	2 cut(s)	254, 296
PciSI	GCTCTTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	608
PkrI	GCNGC	4 cut(s)	8, 367, 438, 441
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	254, 296
PspPI	GGNCC	1 cut(s)	237
PvuI	CGATCG	1 cut(s)	48
RsaI	GTAC	4 cut(s)	233, 254, 472, 484
RsaNI	GTAC	4 cut(s)	232, 253, 471, 483
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	521, 585
SatI	GCNGC	4 cut(s)	7, 366, 437, 440
Sau3AI	GATC	4 cut(s)	45, 82, 312, 541
Sau96I	GGNCC	1 cut(s)	237
ScaI	AGTACT	2 cut(s)	233, 472
SchI	GAGTC	1 cut(s)	592
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	237
Sse9I	AATT	4 cut(s)	178, 201, 490, 603
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	3 cut(s)	174, 360, 474
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	305, 407
TaiI	ACGT	1 cut(s)	423
TasI	AATT	4 cut(s)	178, 201, 490, 603
TatI	WGTACW	2 cut(s)	231, 470
TauI	GCSGC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	521, 585
Tru9I	TTAA	2 cut(s)	521, 585
TscAI	CASTG	3 cut(s)	310, 412, 484
TseI	GCWGC	3 cut(s)	365, 436, 439
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	3 cut(s)	310, 412, 484
Van91I	CCANNNNNTGG	1 cut(s)	608
VpaK11BI	GGWCC	1 cut(s)	237
XspI	CTAG	3 cut(s)	174, 360, 474
ZrmI	AGTACT	2 cut(s)	233, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.