Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016680

Physical Location & Seq

Genomic Coordinates Reverse (-)

386860 .. 389693

Gene Structure 2834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1007100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGACAAGGCAACCTCTGAATCTGCTGCTGGAAAGTCTGCCCCAAACCATCCTCCAATTTCTGAACCCCTTCACTGCTTCTCTTTCGCAGGCGCGTCAAGCCCACGCCCAAATACTCAAGACTGGCCTCTCCAACGACACCAATGTCACCACCAAGCTCCTCTCTGTCTACGCCAACAACCTCTGCTTTCTCGAAGCAAACCTCGTCCTCGATTCGATTCCGAACCCCAACCTGTTCTCCTTCTCCACCCTAATCCACGCCTTTTCGAAGCTCAATCAGTTCAGCCACGCACTATGTTTGTTTTCTCAAATGTTGTCCCGAGGCCTCGCGCCGGACGGTTTTCTCTTCCCCAGCGTCGTCAAGGCCTGCGCTGGCCCGCCAGCGGCTCCGAGAGCCGGCCGTCAGGTTCACGGCATTGCGTGTGTATCTGGGTTTTCTTTCGATTCGTTTGTGCAGTCCTCTTTGGTGCACATGTATATCAAATGTGACCGGATAAAGGATGCACGCAAGGTTTTCGATAGAGTGCCTCAACGGGATGTGGTTATTTTCAGCGCCTTGATTTCAGGGTATTCTCGGCATGGTTGCGTGGATGAGGCTGTGGGACTCTTGTATGAGATGAGGGGGATGGGTTTAGAGCCCAATGTAGTCTTGTGGAATGGGATGATTGCGGGTTTTAATCAGAGCGGGTTATATGCCGATACTGTGTCTGTTTTAAAGAAGATGCATTCGGAAGGTTTTCGACCTGACGGGTCTAGTATTTCTAGTTCTCTTCCTGCTGTCGGACAGTTGGAGGATTTGGGCATGGGGTTTCAGATTCATTGCTATGTGATCAAGCAGGGACTCGTGTCGGACAAATGTGTCGTCAGCGCGCTTATTGATGTGTATGGGAAGTGTGCCTGCGCATTTGAGATGTCACGGTTTTATGATGAAATGGATCAAACGGATGTTGGTGCTTGCAATGCTTTAGTCACGGGGCTTTCACGAAATGGTCTTGTTGACAACGCACTGGAGATGTTCCAACAATTTAAGGGCCAAGTGGAACTGAACATTGTGTCTTGGACCTCGATAATTGCTAGTTGTTCCCAGAATGGAAAGGATATGGAGGCTTTGGAGCTATTCAGAGAGATGCAGATTGAGGGTGTGAAACCAAACTATGTGACAATCCCTTGCTTGCTTCCAGCTTGCGGTAACATTGCAGCCTTGATGCATGGGAAGGCAACTCACTGTTTCGCTCTGAGGAGGGGGATCTCTAACGATGTGTTTGTGGGTAGTGCATTGATTGACATGTACGCGAAATGTGGAAAAATCCACTTGTCTCGGCTTTGTTTTGATAAATTGCACACCAGAAATTTGGTCTGCTGGAATGCAGTTATGAGTGGATATGCAATGCATGGAATGGCTAAGAAAACGATGGAGATATTTGATATGATGCAGAGGAGTGGTCAGAAGCCAGATTTTATCAGCTTTACCTGTATACTCTCTGCATGCAGCCAGAAAGGTTTGACGGAACAAGGATGGAATTATTTTAAAAGTATGTCAAAGGAGCATGGTATAGAAGCCAGAGTGGAGCATTATGCTTGCATGGTGACACTTCTTGGACGGGCTGGAAAACTTGAAGAGGCTTATTCCATGATCAAGAAAATGCCCTTCGAACCAGATGCTTGTGTTTGGGGAGCTTTACTAAGTTCTTGTAGAGTTCACAGTAATGTGACTTTAGGTGAGTCTGTTGCAAAGAAGCTCTTCAATATGGAACCGAAAAATCCTGGTAACTACATTCTTCTGTCAAATATTTATGCTTCCAAAGGCATGTGGACGGAAGTCGATAGAGTGAGGGATACAATGAAGAGTCTTGGTTTGAGGAAGAACCCTGGCTGCAGTTGGATTGAACTGGAGAACAAAGTGCACATGCTTCTTGCAGGAGACACGGGGCATCCGCAAATGAACCAAATTATTGATAAGTTGGATCAGTTGAGCTCGGAGATGAAGAAATCGGGTTACTTCCCCAATACCCACTTTGTATTGCAAGATGTGGAGGAACAAGACAAGGAGCACATTCTGTGCGGACACAGTGAAAAGTTGGCGGTGGCGCTAGGACTTCTGAACACTCCTCCAGGGTCCCCCCTCAGGGTGATTAAGAACCTCAGGATATGTGGTGATTGCCATGCTGTTATAAAATTCATATCTAGCTGTGAAGGAAGAGAGATTTTGGTCAGAGATACAAATCGGTTTCATCATTTTAAAGACGGAGTTTGTTCTTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

758

Amino Acids

83.8

Weight (kDa)

7.86

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 123	5.2e-07	PPR repeat family
PPR_2	PF13041	178 - 216	3.9e-07	PPR repeat family
PPR	PF01535	181 - 211	1.4e-07	PPR repeat
PPR_3	PF13812	346 - 397	2.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	349 - 395	9e-09	PPR repeat family
PPR	PF01535	351 - 381	1.1e-06	PPR repeat
PPR_2	PF13041	450 - 497	7.2e-10	PPR repeat family
PPR	PF01535	452 - 481	5.6e-06	PPR repeat
E_motif	PF20431	567 - 629	4.3e-25	E motif
DYW_deaminase	PF14432	665 - 757	4.9e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20230
fragaria_vesca	FvH4_2g38000
malus_domestica	MD15G1007100.v1.1
prunus_persica	Prupe.1G360000_v2.0.a1
pyrus_communis	pycom15g00570
rosa_chinensis	RchiOBHm_Chr6g0303611
rosa_laevigata	RLG00000011068
rosa_multiflora	Rmu_ssc0000114.1_g000022
rosa_roxburghii	Rroxscaffold_7G00164580
rosa_rugosa	Rorug06G0322800
rosa_samantha	Rh6AG437300 Rh6BG466000 Rh6DG436000
rosa_wichuraiana	Rw6G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2171
AasI	GACNNNNNNGTC	2 cut(s)	143, 857
Acc16I	TGCGCA	1 cut(s)	901
AccBSI	CCGCTC	1 cut(s)	684
AccI	GTMKAC	2 cut(s)	168, 1474
AccII	CGCG	4 cut(s)	94, 329, 869, 1292
AciI	CCGC	8 cut(s)	377, 383, 668, 684, 1185, 1934, 2061, 2081
AclWI	GGATC	3 cut(s)	942, 1253, 1971
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	2 cut(s)	1348, 2174
AfaI	GTAC	1 cut(s)	1289
AfiI	CCNNNNNNNGG	8 cut(s)	331, 382, 395, 496, 779, 1184, 2124, 2125
AflIII	ACRYGT	2 cut(s)	471, 1284
AgsI	TTSAA	3 cut(s)	1616, 1744, 1886
AjnI	CCWGG	3 cut(s)	1762, 1867, 2110
AluBI	AGCT	9 cut(s)	157, 271, 1114, 1181, 1464, 1676, 1738, 1974, 2187
AluI	AGCT	9 cut(s)	157, 271, 1114, 1181, 1464, 1676, 1738, 1974, 2187
Alw21I	GWGCWC	4 cut(s)	471, 1905, 1976, 2052
Alw26I	GTCTC	2 cut(s)	1320, 1914
Alw44I	GTGCAC	2 cut(s)	467, 1901
AlwI	GGATC	3 cut(s)	942, 1253, 1971
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	6 cut(s)	124, 322, 363, 373, 397, 1030
ApaLI	GTGCAC	2 cut(s)	467, 1901
ApeKI	GCWGC	4 cut(s)	25, 1196, 1488, 1872
ApoI	RAATTY	2 cut(s)	1348, 2174
ArsI	GACNNNNNNTTYG	2 cut(s)	846, 878
Asp700I	GAANNNNTTC	3 cut(s)	68, 735, 1739
AspLEI	GCGC	8 cut(s)	94, 331, 371, 554, 869, 871, 902, 2089
AspS9I	GGNCC	4 cut(s)	374, 1030, 1059, 2115
AsuHPI	GGTGA	5 cut(s)	139, 1597, 1730, 2140, 2165
AsuII	TTCGAA	2 cut(s)	266, 1650
AvaI	CYCGRG	1 cut(s)	318
AvaII	GGWCC	2 cut(s)	1059, 2115
AxyI	CCTNAGG	2 cut(s)	2123, 2141
BaeGI	GKGCMC	2 cut(s)	471, 1905
BanII	GRGCYC	2 cut(s)	639, 1976
BauI	CACGAG	1 cut(s)	842
Bbv12I	GWGCWC	4 cut(s)	471, 1905, 1976, 2052
BbvI	GCAGC	4 cut(s)	12, 1208, 1500, 1859
BccI	CCATC	4 cut(s)	56, 619, 1405, 1509
BceAI	ACGGC	2 cut(s)	384, 427
BcgI	CGANNNNNNTGC	4 cut(s)	496, 530, 1640, 1674
BciT130I	CCWGG	3 cut(s)	1764, 1869, 2112
BciVI	GTATCC	1 cut(s)	1828
BclI	TGATCA	2 cut(s)	828, 1632
BcoDI	GTCTC	2 cut(s)	1320, 1914
BfaI	CTAG	5 cut(s)	753, 762, 1074, 2090, 2184
BfmI	CTRYAG	1 cut(s)	1873
BfoI	RGCGCY	2 cut(s)	555, 2090
BfuI	GTATCC	1 cut(s)	1828
BisI	GCNGC	5 cut(s)	26, 384, 1197, 1489, 1873
BlsI	GCNGC	5 cut(s)	27, 385, 1198, 1490, 1874
Bme1390I	CCNGG	3 cut(s)	1764, 1869, 2112
Bme18I	GGWCC	2 cut(s)	1059, 2115
BmeT110I	CYCGRG	1 cut(s)	318
BmgT120I	GGNCC	4 cut(s)	374, 1030, 1059, 2115
BmiI	GGNNCC	4 cut(s)	387, 1752, 2116, 2117
BmrFI	CCNGG	3 cut(s)	1764, 1869, 2112
BmsI	GCATC	7 cut(s)	490, 711, 1116, 1194, 1419, 1648, 1939
BoxI	GACNNNNGTC	2 cut(s)	844, 1817
BpmI	CTGGAG	3 cut(s)	1028, 1910, 2094
Bpu14I	TTCGAA	2 cut(s)	266, 1650
BpuEI	CTTGAG	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	2220
BsaJI	CCNNGG	3 cut(s)	319, 1867, 2111
BsaWI	WCCGGW	1 cut(s)	489
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	8 cut(s)	331, 382, 395, 496, 779, 1184, 2124, 2125
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	3 cut(s)	127, 1011, 1893
Bse21I	CCTNAGG	2 cut(s)	2123, 2141
Bse3DI	GCAATG	5 cut(s)	414, 817, 964, 1191, 1392
Bse8I	GATNNNNATC	1 cut(s)	2220
BseBI	CCWGG	3 cut(s)	1764, 1869, 2112
BseDI	CCNNGG	3 cut(s)	319, 1867, 2111
BseGI	GGATG	9 cut(s)	48, 505, 541, 595, 630, 666, 949, 1520, 1930
BseJI	GATNNNNATC	1 cut(s)	2220
BseLI	CCNNNNNNNGG	8 cut(s)	331, 382, 395, 496, 779, 1184, 2124, 2125
BseMI	GCAATG	5 cut(s)	414, 817, 964, 1191, 1392
BseMII	CTCAG	3 cut(s)	1226, 2137, 2155
BseNI	ACTGG	3 cut(s)	127, 1011, 1893
BsePI	GCGCGC	1 cut(s)	867
BseRI	GAGGAG	4 cut(s)	149, 1252, 1450, 2097
BseSI	GKGCMC	2 cut(s)	471, 1905
BseX3I	CGGCCG	1 cut(s)	397
BseXI	GCAGC	4 cut(s)	12, 1208, 1500, 1859
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	4 cut(s)	94, 329, 869, 1292
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	6 cut(s)	126, 324, 365, 375, 399, 1032
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	4 cut(s)	471, 1905, 1976, 2052
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	332, 396, 490
BslFI	GGGAC	4 cut(s)	301, 615, 852, 2101
BslI	CCNNNNNNNGG	8 cut(s)	331, 382, 395, 496, 779, 1184, 2124, 2125
BsmAI	GTCTC	2 cut(s)	1320, 1914
BsmFI	GGGAC	4 cut(s)	301, 615, 852, 2101
BsmI	GAATGC	2 cut(s)	724, 1369
BsnI	GGCC	6 cut(s)	126, 324, 365, 375, 399, 1032
BsoBI	CYCGRG	1 cut(s)	318
Bsp119I	TTCGAA	2 cut(s)	266, 1650
Bsp1286I	GDGCHC	5 cut(s)	471, 639, 1905, 1976, 2052
Bsp143I	GATC	5 cut(s)	828, 934, 1245, 1632, 1963
BspACI	CCGC	8 cut(s)	377, 383, 668, 684, 1185, 1934, 2061, 2081
BspANI	GGCC	6 cut(s)	126, 324, 365, 375, 399, 1032
BspCNI	CTCAG	3 cut(s)	1227, 2136, 2154
BspFNI	CGCG	4 cut(s)	94, 329, 869, 1292
BspLI	GGNNCC	4 cut(s)	387, 1752, 2116, 2117
BspMAI	CTGCAG	1 cut(s)	1877
BspPI	GGATC	3 cut(s)	942, 1253, 1971
BspQI	GCTCTTC	1 cut(s)	1745
BspT104I	TTCGAA	2 cut(s)	266, 1650
BsrBI	CCGCTC	1 cut(s)	684
BsrDI	GCAATG	5 cut(s)	414, 817, 964, 1191, 1392
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	3 cut(s)	127, 1011, 1893
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	3 cut(s)	319, 1867, 2111
BssHII	GCGCGC	1 cut(s)	867
BssMI	GATC	5 cut(s)	828, 934, 1245, 1632, 1963
BssNAI	GTATAC	1 cut(s)	1475
BssSI	CACGAG	1 cut(s)	842
Bst1107I	GTATAC	1 cut(s)	1475
Bst2BI	CACGAG	1 cut(s)	842
Bst2UI	CCWGG	3 cut(s)	1764, 1869, 2112
Bst4CI	ACNGT	7 cut(s)	338, 703, 786, 918, 1226, 1703, 2069
Bst6I	CTCTTC	6 cut(s)	350, 774, 1611, 1745, 1838, 2191
BstBI	TTCGAA	2 cut(s)	266, 1650
BstDEI	CTNAG	5 cut(s)	1235, 1401, 1682, 2123, 2141
BstF5I	GGATG	9 cut(s)	48, 505, 541, 595, 630, 666, 949, 1520, 1930
BstFNI	CGCG	4 cut(s)	94, 329, 869, 1292
BstH2I	RGCGCY	2 cut(s)	555, 2090
BstHHI	GCGC	8 cut(s)	94, 331, 371, 554, 869, 871, 902, 2089
BstKTI	GATC	5 cut(s)	831, 937, 1248, 1635, 1966
BstMAI	GTCTC	2 cut(s)	1320, 1914
BstMBI	GATC	5 cut(s)	828, 934, 1245, 1632, 1963
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 392, 959
BstNI	CCWGG	3 cut(s)	1764, 1869, 2112
BstNSI	RCATGY	5 cut(s)	475, 1288, 1488, 1810, 1909
BstPAI	GACNNNNGTC	2 cut(s)	844, 1817
BstSCI	CCNGG	3 cut(s)	1762, 1867, 2110
BstSFI	CTRYAG	1 cut(s)	1873
BstSLI	GKGCMC	2 cut(s)	471, 1905
BstUI	CGCG	4 cut(s)	94, 329, 869, 1292
BstV1I	GCAGC	4 cut(s)	12, 1208, 1500, 1859
BstX2I	RGATCY	1 cut(s)	1245
BstXI	CCANNNNNNTGG	1 cut(s)	1351
BstYI	RGATCY	1 cut(s)	1245
BstZ17I	GTATAC	1 cut(s)	1475
BstZI	CGGCCG	1 cut(s)	397
Bsu36I	CCTNAGG	2 cut(s)	2123, 2141
BsuI	GTATCC	1 cut(s)	1828
BsuRI	GGCC	6 cut(s)	126, 324, 365, 375, 399, 1032
BtsCI	GGATG	9 cut(s)	48, 505, 541, 595, 630, 666, 949, 1520, 1930
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	4 cut(s)	72, 1004, 1222, 2074
CfoI	GCGC	8 cut(s)	94, 331, 371, 554, 869, 871, 902, 2089
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	4 cut(s)	374, 1030, 1059, 2115
CseI	GACGC	2 cut(s)	83, 343
Csp6I	GTAC	1 cut(s)	1288
CviQI	GTAC	1 cut(s)	1288
DdeI	CTNAG	5 cut(s)	1235, 1401, 1682, 2123, 2141
DpnI	GATC	5 cut(s)	830, 936, 1247, 1634, 1965
DpnII	GATC	5 cut(s)	828, 934, 1245, 1632, 1963
DraI	TTTAAA	3 cut(s)	714, 1528, 2239
DrdI	GACNNNNNNGTC	2 cut(s)	143, 857
DseDI	GACNNNNNNGTC	2 cut(s)	143, 857
EaeI	YGGCCR	1 cut(s)	397
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	6 cut(s)	350, 774, 1611, 1745, 1838, 2191
EarI	CTCTTC	6 cut(s)	350, 774, 1611, 1745, 1838, 2191
Ecl136II	GAGCTC	1 cut(s)	1974
EclXI	CGGCCG	1 cut(s)	397
Eco147I	AGGCCT	2 cut(s)	324, 365
Eco24I	GRGCYC	2 cut(s)	639, 1976
Eco47I	GGWCC	2 cut(s)	1059, 2115
Eco52I	CGGCCG	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	1974
Eco81I	CCTNAGG	2 cut(s)	2123, 2141
Eco88I	CYCGRG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	1974
EcoO109I	RGGNCCY	1 cut(s)	2115
EcoRII	CCWGG	3 cut(s)	1762, 1867, 2110
EcoT22I	ATGCAT	3 cut(s)	726, 1209, 1392
EcoT38I	GRGCYC	2 cut(s)	639, 1976
FalI	AAGNNNNNCTT	2 cut(s)	1724, 1756
FaqI	GGGAC	4 cut(s)	301, 615, 852, 2101
FauI	CCCGC	3 cut(s)	384, 661, 677
FbaI	TGATCA	2 cut(s)	828, 1632
FblI	GTMKAC	2 cut(s)	168, 1474
Fnu4HI	GCNGC	5 cut(s)	26, 384, 1197, 1489, 1873
FokI	GGATG	9 cut(s)	35, 512, 548, 602, 637, 673, 956, 1527, 1917
FriOI	GRGCYC	2 cut(s)	639, 1976
Fsp4HI	GCNGC	5 cut(s)	26, 384, 1197, 1489, 1873
FspBI	CTAG	5 cut(s)	753, 762, 1074, 2090, 2184
FspI	TGCGCA	1 cut(s)	901
GlaI	GCGC	8 cut(s)	93, 330, 370, 553, 868, 870, 901, 2088
GluI	GCNGC	5 cut(s)	26, 384, 1197, 1489, 1873
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	3 cut(s)	1028, 1910, 2094
HaeII	RGCGCY	2 cut(s)	555, 2090
HaeIII	GGCC	6 cut(s)	126, 324, 365, 375, 399, 1032
HapII	CCGG	3 cut(s)	332, 396, 490
HgaI	GACGC	2 cut(s)	83, 343
HhaI	GCGC	8 cut(s)	94, 331, 371, 554, 869, 871, 902, 2089
Hin6I	GCGC	8 cut(s)	92, 329, 369, 552, 867, 869, 900, 2087
HinP1I	GCGC	8 cut(s)	92, 329, 369, 552, 867, 869, 900, 2087
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	9 cut(s)	19, 212, 217, 443, 603, 814, 840, 1721, 1846
HpaII	CCGG	3 cut(s)	332, 396, 490
HphI	GGTGA	5 cut(s)	139, 1597, 1730, 2140, 2165
Hpy166II	GTNNAC	8 cut(s)	169, 409, 469, 997, 1475, 1699, 1812, 1903
Hpy188III	TCNNGA	6 cut(s)	118, 191, 318, 981, 1636, 2143
Hpy8I	GTNNAC	8 cut(s)	169, 409, 469, 997, 1475, 1699, 1812, 1903
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	6 cut(s)	79, 250, 725, 1207, 1657, 2186
HpyCH4III	ACNGT	7 cut(s)	338, 703, 786, 918, 1226, 1703, 2069
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 392, 959
HpyF3I	CTNAG	5 cut(s)	1235, 1401, 1682, 2123, 2141
HspAI	GCGC	8 cut(s)	92, 329, 369, 552, 867, 869, 900, 2087
KflI	GGGWCCC	1 cut(s)	2115
KroI	GCCGGC	1 cut(s)	395
KroNI	GCCGGC	1 cut(s)	397
Ksp22I	TGATCA	2 cut(s)	828, 1632
Kzo9I	GATC	5 cut(s)	828, 934, 1245, 1632, 1963
LguI	GCTCTTC	1 cut(s)	1745
LmnI	GCTCC	7 cut(s)	162, 391, 1111, 1543, 1567, 1673, 2047
Lsp1109I	GCAGC	4 cut(s)	12, 1208, 1500, 1859
LweI	GCATC	7 cut(s)	490, 711, 1116, 1194, 1419, 1648, 1939
MaeI	CTAG	5 cut(s)	753, 762, 1074, 2090, 2184
MalI	GATC	5 cut(s)	830, 936, 1247, 1634, 1965
MbiI	CCGCTC	1 cut(s)	684
MboI	GATC	5 cut(s)	828, 934, 1245, 1632, 1963
MflI	RGATCY	1 cut(s)	1245
MhlI	GDGCHC	5 cut(s)	471, 639, 1905, 1976, 2052
MluCI	AATT	8 cut(s)	56, 1022, 1068, 1334, 1348, 1519, 1947, 2174
MlyI	GAGTC	4 cut(s)	597, 834, 1730, 1855
MmeI	TCCRAC	7 cut(s)	156, 760, 768, 828, 1042, 1859, 1941
Mph1103I	ATGCAT	3 cut(s)	726, 1209, 1392
MroNI	GCCGGC	1 cut(s)	395
MroXI	GAANNNNTTC	3 cut(s)	68, 735, 1739
MseI	TTAA	6 cut(s)	675, 713, 1026, 1527, 2133, 2238
MslI	CAYNNNNRTG	2 cut(s)	822, 1704
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	332, 396, 490
MspR9I	CCNGG	3 cut(s)	1764, 1869, 2112
Mva1269I	GAATGC	2 cut(s)	724, 1369
MvaI	CCWGG	3 cut(s)	1764, 1869, 2112
MvnI	CGCG	4 cut(s)	94, 329, 869, 1292
MwoI	GCNNNNNNNGC	3 cut(s)	98, 392, 959
NaeI	GCCGGC	1 cut(s)	397
NdeII	GATC	5 cut(s)	828, 934, 1245, 1632, 1963
NgoMIV	GCCGGC	1 cut(s)	395
NlaIV	GGNNCC	4 cut(s)	387, 1752, 2116, 2117
NmeAIII	GCCGAG	2 cut(s)	553, 1297
NmuCI	GTSAC	7 cut(s)	145, 485, 912, 967, 1156, 1585, 1708
NsbI	TGCGCA	1 cut(s)	901
NsiI	ATGCAT	3 cut(s)	726, 1209, 1392
NspI	RCATGY	5 cut(s)	475, 1288, 1488, 1810, 1909
NspV	TTCGAA	2 cut(s)	266, 1650
PaeI	GCATGC	1 cut(s)	1488
PauI	GCGCGC	1 cut(s)	867
PceI	AGGCCT	2 cut(s)	324, 365
PciI	ACATGT	2 cut(s)	471, 1284
PciSI	GCTCTTC	1 cut(s)	1745
PctI	GAATGC	2 cut(s)	724, 1369
PdiI	GCCGGC	1 cut(s)	397
PdmI	GAANNNNTTC	3 cut(s)	68, 735, 1739
PfeI	GAWTC	5 cut(s)	19, 212, 217, 443, 814
PkrI	GCNGC	5 cut(s)	27, 385, 1198, 1490, 1874
PleI	GAGTC	4 cut(s)	597, 834, 1729, 1854
PpsI	GAGTC	4 cut(s)	597, 834, 1729, 1854
PpuMI	RGGWCCY	1 cut(s)	2115
PscI	ACATGT	2 cut(s)	471, 1284
PshAI	GACNNNNGTC	2 cut(s)	844, 1817
PsiI	TTATAA	1 cut(s)	2171
Psp124BI	GAGCTC	1 cut(s)	1976
Psp5II	RGGWCCY	1 cut(s)	2115
Psp6I	CCWGG	3 cut(s)	1762, 1867, 2110
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	3 cut(s)	1762, 1867, 2110
PspN4I	GGNNCC	4 cut(s)	387, 1752, 2116, 2117
PspPI	GGNCC	4 cut(s)	374, 1030, 1059, 2115
PspPPI	RGGWCCY	1 cut(s)	2115
PsrI	GAACNNNNNNTAC	2 cut(s)	748, 780
PstI	CTGCAG	1 cut(s)	1877
PsuI	RGATCY	1 cut(s)	1245
PteI	GCGCGC	1 cut(s)	867
RsaI	GTAC	1 cut(s)	1289
RsaNI	GTAC	1 cut(s)	1288
RseI	CAYNNNNRTG	2 cut(s)	822, 1704
SacI	GAGCTC	1 cut(s)	1976
SapI	GCTCTTC	1 cut(s)	1745
SaqAI	TTAA	6 cut(s)	675, 713, 1026, 1527, 2133, 2238
SatI	GCNGC	5 cut(s)	26, 384, 1197, 1489, 1873
Sau3AI	GATC	5 cut(s)	828, 934, 1245, 1632, 1963
Sau96I	GGNCC	4 cut(s)	374, 1030, 1059, 2115
SchI	GAGTC	4 cut(s)	597, 834, 1730, 1855
ScrFI	CCNGG	3 cut(s)	1764, 1869, 2112
SduI	GDGCHC	5 cut(s)	471, 639, 1905, 1976, 2052
SfaNI	GCATC	7 cut(s)	490, 711, 1116, 1194, 1419, 1648, 1939
SfcI	CTRYAG	1 cut(s)	1873
SfuI	TTCGAA	2 cut(s)	266, 1650
SinI	GGWCC	2 cut(s)	1059, 2115
SmiMI	CAYNNNNRTG	2 cut(s)	822, 1704
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SphI	GCATGC	1 cut(s)	1488
Sse9I	AATT	8 cut(s)	56, 1022, 1068, 1334, 1348, 1519, 1947, 2174
SseBI	AGGCCT	2 cut(s)	324, 365
SsiI	CCGC	8 cut(s)	377, 383, 668, 684, 1185, 1934, 2061, 2081
SspI	AATATT	1 cut(s)	1789
SspMI	CTAG	5 cut(s)	753, 762, 1074, 2090, 2184
SstI	GAGCTC	1 cut(s)	1976
StuI	AGGCCT	2 cut(s)	324, 365
StyD4I	CCNGG	3 cut(s)	1762, 1867, 2110
TaaI	ACNGT	7 cut(s)	338, 703, 786, 918, 1226, 1703, 2069
TasI	AATT	8 cut(s)	56, 1022, 1068, 1334, 1348, 1519, 1947, 2174
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	5 cut(s)	19, 212, 217, 443, 814
Tru1I	TTAA	6 cut(s)	675, 713, 1026, 1527, 2133, 2238
Tru9I	TTAA	6 cut(s)	675, 713, 1026, 1527, 2133, 2238
TscAI	CASTG	4 cut(s)	79, 1011, 1229, 2074
TseFI	GTSAC	7 cut(s)	145, 485, 912, 967, 1156, 1585, 1708
TseI	GCWGC	4 cut(s)	25, 1196, 1488, 1872
Tsp45I	GTSAC	7 cut(s)	145, 485, 912, 967, 1156, 1585, 1708
TspDTI	ATGAA	7 cut(s)	806, 942, 1856, 1955, 1997, 2167, 2219
TspGWI	ACGGA	4 cut(s)	956, 1520, 1829, 2259
TspRI	CASTG	4 cut(s)	79, 1011, 1229, 2074
VneI	GTGCAC	2 cut(s)	467, 1901
VpaK11BI	GGWCC	2 cut(s)	1059, 2115
XapI	RAATTY	2 cut(s)	1348, 2174
XceI	RCATGY	5 cut(s)	475, 1288, 1488, 1810, 1909
XmiI	GTMKAC	2 cut(s)	168, 1474
XmnI	GAANNNNTTC	3 cut(s)	68, 735, 1739
XspI	CTAG	5 cut(s)	753, 762, 1074, 2090, 2184
Zsp2I	ATGCAT	3 cut(s)	726, 1209, 1392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.