Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016680

Physical Location & Seq

Genomic Coordinates Forward (+)

6458107 .. 6460374

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011068

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGACCCGGCAAGTTCTCAATCTCTCTGACCATTTGCTTCCCAAACTCCTCCACTTGTTAAACCCCTCATCTTCCTTATCACAGGCCCAACAAGGCCATGCCCAGATTGTCAAAACAGGTCTCTCCAATTACACCAATCTCACCACCAAGCTCCTTTCTCTCTACGCCAACGCCCTCTGCTTTGCAGAAGCCAAACTCGTCCTCGATTCGATCCCACACCCTAACTTGTTCTCTTTCTCCACCCTCATTCATGCCTTGTCAAAGCTCAATAGCTTCGGCAATGCACTTGCCTTGTTCTCCCAAATGTTATCTCGGGGCCTCGTCCCGGATAGCTTCCTCTTCCCCAGTGTCGTCAAGGCCTGTGCCGGATTGCAATCTTCGCAGTCCGCGAAACAGGTCCATGCGATTTCCTTTGCTTCCGGGTTCGGTTTGGATTCGTTTGTGCAATCGTCTTTGGTGCACATGTATATCAAATGTGACCGAATGAGAGATGCACAGAAGGTGTTTGATAGAGTGCCTGAGAGAGATGTGATTATTTACAGTGCTTTGATTTCTGGGTATTCTCGCCGCGGGTGTGTTGATGAGGCCCTGAAGCTTTTAGATGAGATGAGGGGTTTGGGTTTTGAGCCAAATGTGGTGTTGTGGAATGGGATGATTGCTGGGTTTAGTCAGAGCAAGTTGTATGCTAGTGCGGTTGCCGTGCTTCAGAAAATGCATTCGGAAGGATTTGAACCCGATGGCTCTAGTATTTCTAGTGTTCTTCCTGCTGTAGGGGACTTGGGGGGTTTAGACGTTGGGATTCAGATTCATGGCTATGTGATCAAGCGGGGACTAAACTCGGACAAGTGTGTTGTTAGTGCACTTGTCGATATGTATGGGAAGTGTGCCTGCACGTCGGAGATGTCTCGAGTTGTTGGTGAAATGGAGGAAACAGATGTTGGTGCTTGCAATGCTTTAGTTACAGGGCTTGCCCGAAATGGTCTTGTTGACAATGCACTGGAGGTGTTCAGGCAATTTAAGGGCAAAGGAGTGGAACTCAATATTGTGTCTTGGACCTCCATAATTGCTAGTTGTTCCCAAAATGGGAAAGACATGGAGGCTTTGGAGCTTTTTAGAGAGATGCAGATCGAAGGTGTGGAGCCAAACTCTATGACTATTTCTTGCTTGCTTCCGGCTTGTGGCAATATTGCAGCCTTGATGCATGGGAAGGCAGCCCATTGTTTCGCTGTCAGGAGGGGGATGCTTAGTGATGTGTATGTGGGCAGTGCATTGATTGATATGTATGCAAACTCCGGCAAAATCCAATTATCTCGACTTTGTTTTGATAAAATGCCCACTAGGAATTTGGTTTGCTGGAATGCAGTTATGAGCGGATATGCAATGCATGGAAAAGCAAAGGAAACTATGGAGATCTTTCGTATGATGCAGAGGACTGGACAGAAGCCCGATATCATTAGCTTCACCTGTTTATTGTCTGCATGCAGCCAGAACGGTCTAACAGAAGATGGATGGTATTATTTTAACAGCATGTCAAAAGAACACAGTATAGAAGCCCGGATAGAACATTACGCTTGCATGGTCACACTACTCGGTCGTGCTGGAAAACTTGATGAGGCTTATTCCATGATCAAGAAAATGCCATTTGAACCTGATGCTTGTGTTTGGGGAGCTTTGCTAAGAGACAAAGCACATCCTCAAATGAACCAAATTACGGAAAAGTTGAACAGATTGAGCTCAGAGATGAAGAGATCAGGCTACCTCCCCAATACCCACTTTGTATTGCAAGATGTGGAAGAACAAGAGAAGGAGCAGATTTTGTGTGGACACAGTGAAAAATTGGCAGTAGTGTTGGGGCTTCTGAACACTCCTCCAGGGTCTTCCCTTAGGGTAATTAAGAACCTCAGGATCTGTGGTGATTGTCATTCTGTTATCAAATTCATATCCAGCTTGGAAGGGAGAGAGATTTCAGTCAGAGACACCAATCGCTTTCATCATTTTAAAGATGGAGTTTGTTCTTGTGGGGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

678

Amino Acids

74.47

Weight (kDa)

7.24

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 122	2e-06	PPR repeat family
PPR_2	PF13041	175 - 213	5.1e-09	PPR repeat family
PPR_1	PF12854	175 - 204	3.7e-08	PPR repeat
PPR	PF01535	179 - 208	1.4e-08	PPR repeat
PPR_2	PF13041	210 - 254	4.1e-06	PPR repeat family
PPR_3	PF13812	335 - 395	6.2e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	347 - 394	2.1e-10	PPR repeat family
PPR	PF01535	349 - 379	9.3e-07	PPR repeat
PPR_2	PF13041	448 - 495	8.6e-11	PPR repeat family
DYW_deaminase	PF14432	585 - 677	1.7e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20230
fragaria_vesca	FvH4_2g38000
malus_domestica	MD15G1007100.v1.1
prunus_persica	Prupe.1G360000_v2.0.a1
pyrus_communis	pycom15g00570
rosa_chinensis	RchiOBHm_Chr6g0303611
rosa_laevigata	RLG00000011068
rosa_multiflora	Rmu_ssc0000114.1_g000022
rosa_roxburghii	Rroxscaffold_7G00164580
rosa_rugosa	Rorug06G0322800
rosa_samantha	Rh6AG437300 Rh6BG466000 Rh6DG436000
rosa_wichuraiana	Rw6G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1371
AccII	CGCG	2 cut(s)	389, 570
AciI	CCGC	6 cut(s)	387, 568, 570, 692, 826, 1371
AclWI	GGATC	2 cut(s)	205, 1913
AcsI	RAATTY	2 cut(s)	1342, 1934
AcuI	CTGAAG	2 cut(s)	611, 689
AfiI	CCNNNNNNNGG	5 cut(s)	325, 770, 1083, 1178, 1711
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	3 cut(s)	731, 1646, 1723
AjiI	CACGTC	1 cut(s)	894
AjnI	CCWGG	1 cut(s)	1870
AjuI	GAANNNNNNNTTGG	2 cut(s)	921, 953
Alw21I	GWGCWC	3 cut(s)	462, 862, 1736
Alw26I	GTCTC	4 cut(s)	125, 909, 1674, 1968
Alw44I	GTGCAC	2 cut(s)	458, 858
AlwI	GGATC	2 cut(s)	205, 1913
AlwNI	CAGNNNCTG	1 cut(s)	1908
Ama87I	CYCGRG	2 cut(s)	312, 906
AoxI	GGCC	5 cut(s)	84, 94, 316, 357, 585
ApaLI	GTGCAC	2 cut(s)	458, 858
ApeKI	GCWGC	3 cut(s)	1190, 1211, 1482
ApoI	RAATTY	2 cut(s)	1342, 1934
AspS9I	GGNCC	5 cut(s)	85, 316, 397, 586, 1053
AsuC2I	CCSGG	4 cut(s)	7, 326, 421, 1555
AsuHPI	GGTGA	4 cut(s)	133, 929, 1453, 1925
AvaI	CYCGRG	2 cut(s)	312, 906
AvaII	GGWCC	2 cut(s)	397, 1053
AxyI	CCTNAGG	2 cut(s)	1883, 1901
BaeGI	GKGCMC	2 cut(s)	462, 862
BanII	GRGCYC	1 cut(s)	1736
BbsI	GAAGAC	1 cut(s)	1869
Bbv12I	GWGCWC	3 cut(s)	462, 862, 1736
BbvI	GCAGC	3 cut(s)	1202, 1223, 1494
BccI	CCATC	4 cut(s)	731, 1499, 1503, 1997
BceAI	ACGGC	1 cut(s)	683
BciT130I	CCWGG	1 cut(s)	1872
BclI	TGATCA	2 cut(s)	819, 1626
BcnI	CCSGG	4 cut(s)	7, 326, 421, 1555
BcoDI	GTCTC	4 cut(s)	125, 909, 1674, 1968
BfaI	CTAG	5 cut(s)	687, 744, 753, 1068, 1338
BfmI	CTRYAG	1 cut(s)	768
BglII	AGATCT	1 cut(s)	1410
BisI	GCNGC	4 cut(s)	568, 1191, 1212, 1483
BlsI	GCNGC	4 cut(s)	569, 1192, 1213, 1484
Bme1390I	CCNGG	5 cut(s)	7, 326, 421, 1555, 1872
Bme18I	GGWCC	2 cut(s)	397, 1053
BmeT110I	CYCGRG	2 cut(s)	312, 906
BmgBI	CACGTC	1 cut(s)	894
BmgT120I	GGNCC	5 cut(s)	85, 316, 397, 586, 1053
BmiI	GGNNCC	2 cut(s)	317, 1140
BmrFI	CCNGG	5 cut(s)	7, 326, 421, 1555, 1872
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	6 cut(s)	481, 1110, 1188, 1230, 1413, 1642
BmuI	ACTGGG	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	1869
BplI	GAGNNNNNCTC	4 cut(s)	1020, 1052, 1130, 1162
BpmI	CTGGAG	2 cut(s)	1019, 1854
BpuMI	CCSGG	4 cut(s)	7, 326, 421, 1555
BsaBI	GATNNNNATC	2 cut(s)	373, 1124
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	568, 1871
Bsc4I	CCNNNNNNNGG	5 cut(s)	325, 770, 1083, 1178, 1711
Bse1I	ACTGG	4 cut(s)	345, 1002, 1438, 2033
Bse21I	CCTNAGG	2 cut(s)	1883, 1901
Bse3DI	GCAATG	3 cut(s)	286, 955, 1386
Bse8I	GATNNNNATC	2 cut(s)	373, 1124
BseBI	CCWGG	1 cut(s)	1872
BseDI	CCNNGG	2 cut(s)	568, 1871
BseGI	GGATG	4 cut(s)	657, 1245, 1514, 1690
BseJI	GATNNNNATC	2 cut(s)	373, 1124
BseLI	CCNNNNNNNGG	5 cut(s)	325, 770, 1083, 1178, 1711
BseMI	GCAATG	3 cut(s)	286, 955, 1386
BseMII	CTCAG	3 cut(s)	510, 1749, 1915
BseNI	ACTGG	4 cut(s)	345, 1002, 1438, 2033
BseRI	GAGGAG	2 cut(s)	38, 1857
BseSI	GKGCMC	2 cut(s)	462, 862
BseXI	GCAGC	3 cut(s)	1202, 1223, 1494
BseYI	CCCAGC	1 cut(s)	659
BsgI	GTGCAG	1 cut(s)	874
Bsh1236I	CGCG	2 cut(s)	389, 570
Bsh1285I	CGRYCG	1 cut(s)	1594
BshFI	GGCC	5 cut(s)	86, 96, 318, 359, 587
BsiEI	CGRYCG	1 cut(s)	1594
BsiHKAI	GWGCWC	3 cut(s)	462, 862, 1736
BsiHKCI	CYCGRG	2 cut(s)	312, 906
BsiSI	CCGG	7 cut(s)	7, 326, 366, 420, 1172, 1293, 1555
BslFI	GGGAC	3 cut(s)	308, 788, 843
BslI	CCNNNNNNNGG	5 cut(s)	325, 770, 1083, 1178, 1711
BsmAI	GTCTC	4 cut(s)	125, 909, 1674, 1968
BsmFI	GGGAC	3 cut(s)	308, 788, 843
BsmI	GAATGC	2 cut(s)	715, 1363
BsnI	GGCC	5 cut(s)	86, 96, 318, 359, 587
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	2 cut(s)	312, 906
Bsp1286I	GDGCHC	3 cut(s)	462, 862, 1736
Bsp143I	GATC	7 cut(s)	210, 819, 1125, 1410, 1626, 1748, 1905
BspACI	CCGC	6 cut(s)	387, 568, 570, 692, 826, 1371
BspANI	GGCC	5 cut(s)	86, 96, 318, 359, 587
BspCNI	CTCAG	3 cut(s)	511, 1748, 1914
BspFNI	CGCG	2 cut(s)	389, 570
BspLI	GGNNCC	2 cut(s)	317, 1140
BspPI	GGATC	2 cut(s)	205, 1913
BspTNI	GGTCTC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	1371
BsrDI	GCAATG	3 cut(s)	286, 955, 1386
BsrI	ACTGG	4 cut(s)	345, 1002, 1438, 2033
BssECI	CCNNGG	2 cut(s)	568, 1871
BssMI	GATC	7 cut(s)	210, 819, 1125, 1410, 1626, 1748, 1905
Bst2UI	CCWGG	1 cut(s)	1872
Bst4CI	ACNGT	4 cut(s)	542, 1493, 1544, 1829
Bst6I	CTCTTC	2 cut(s)	344, 1739
BstC8I	GCNNGC	6 cut(s)	889, 946, 969, 1166, 1480, 1573
BstDEI	CTNAG	6 cut(s)	519, 1244, 1676, 1735, 1883, 1901
BstDSI	CCRYGG	1 cut(s)	568
BstENI	CCTNNNNNAGG	1 cut(s)	768
BstF5I	GGATG	4 cut(s)	657, 1245, 1514, 1690
BstFNI	CGCG	2 cut(s)	389, 570
BstKTI	GATC	7 cut(s)	213, 822, 1128, 1413, 1629, 1751, 1908
BstMAI	GTCTC	4 cut(s)	125, 909, 1674, 1968
BstMBI	GATC	7 cut(s)	210, 819, 1125, 1410, 1626, 1748, 1905
BstMCI	CGRYCG	1 cut(s)	1594
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 950
BstNI	CCWGG	1 cut(s)	1872
BstNSI	RCATGY	3 cut(s)	466, 1482, 1531
BstSCI	CCNGG	5 cut(s)	5, 324, 419, 1553, 1870
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	2 cut(s)	462, 862
BstUI	CGCG	2 cut(s)	389, 570
BstV1I	GCAGC	3 cut(s)	1202, 1223, 1494
BstV2I	GAAGAC	1 cut(s)	1869
BstX2I	RGATCY	2 cut(s)	1410, 1905
BstYI	RGATCY	2 cut(s)	1410, 1905
Bsu36I	CCTNAGG	2 cut(s)	1883, 1901
BsuRI	GGCC	5 cut(s)	86, 96, 318, 359, 587
BtgI	CCRYGG	1 cut(s)	568
BtrI	CACGTC	1 cut(s)	894
BtsCI	GGATG	4 cut(s)	657, 1245, 1514, 1690
BtsI	GCAGTG	1 cut(s)	1270
BtsIMutI	CAGTG	5 cut(s)	352, 547, 995, 1270, 1834
Cac8I	GCNNGC	6 cut(s)	889, 946, 969, 1166, 1480, 1573
CaiI	CAGNNNCTG	1 cut(s)	1908
Cfr13I	GGNCC	5 cut(s)	85, 316, 397, 586, 1053
Cfr42I	CCGCGG	1 cut(s)	571
DdeI	CTNAG	6 cut(s)	519, 1244, 1676, 1735, 1883, 1901
DpnI	GATC	7 cut(s)	212, 821, 1127, 1412, 1628, 1750, 1907
DpnII	GATC	7 cut(s)	210, 819, 1125, 1410, 1626, 1748, 1905
DraI	TTTAAA	1 cut(s)	1999
Eam1104I	CTCTTC	2 cut(s)	344, 1739
EarI	CTCTTC	2 cut(s)	344, 1739
Ecl136II	GAGCTC	1 cut(s)	1734
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	1736
Eco31I	GGTCTC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	1450
Eco47I	GGWCC	2 cut(s)	397, 1053
Eco53kI	GAGCTC	1 cut(s)	1734
Eco57I	CTGAAG	2 cut(s)	611, 689
Eco81I	CCTNAGG	2 cut(s)	1883, 1901
Eco88I	CYCGRG	2 cut(s)	312, 906
EcoICRI	GAGCTC	1 cut(s)	1734
EcoNI	CCTNNNNNAGG	1 cut(s)	768
EcoO109I	RGGNCCY	2 cut(s)	316, 586
EcoRII	CCWGG	1 cut(s)	1870
EcoRV	GATATC	1 cut(s)	1450
EcoT22I	ATGCAT	3 cut(s)	717, 1203, 1386
EcoT38I	GRGCYC	1 cut(s)	1736
FaqI	GGGAC	3 cut(s)	308, 788, 843
FauI	CCCGC	2 cut(s)	563, 819
FbaI	TGATCA	2 cut(s)	819, 1626
Fnu4HI	GCNGC	4 cut(s)	568, 1191, 1212, 1483
FokI	GGATG	4 cut(s)	664, 1252, 1521, 1677
FriOI	GRGCYC	1 cut(s)	1736
Fsp4HI	GCNGC	4 cut(s)	568, 1191, 1212, 1483
FspBI	CTAG	5 cut(s)	687, 744, 753, 1068, 1338
GluI	GCNGC	4 cut(s)	568, 1191, 1212, 1483
GsaI	CCCAGC	1 cut(s)	663
GsuI	CTGGAG	2 cut(s)	1019, 1854
HaeIII	GGCC	5 cut(s)	86, 96, 318, 359, 587
HapII	CCGG	7 cut(s)	7, 326, 366, 420, 1172, 1293, 1555
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	4 cut(s)	206, 434, 799, 805
HpaII	CCGG	7 cut(s)	7, 326, 366, 420, 1172, 1293, 1555
HphI	GGTGA	4 cut(s)	133, 929, 1453, 1925
Hpy166II	GTNNAC	4 cut(s)	460, 860, 988, 1823
Hpy188III	TCNNGA	5 cut(s)	906, 1231, 1311, 1630, 1903
Hpy8I	GTNNAC	4 cut(s)	460, 860, 988, 1823
Hpy99I	CGWCG	1 cut(s)	898
HpyAV	CCTTC	6 cut(s)	493, 716, 1124, 1201, 1798, 1946
HpyCH4III	ACNGT	4 cut(s)	542, 1493, 1544, 1829
HpyCH4IV	ACGT	2 cut(s)	792, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 950
HpyF3I	CTNAG	6 cut(s)	519, 1244, 1676, 1735, 1883, 1901
HpySE526I	ACGT	2 cut(s)	792, 893
Ksp22I	TGATCA	2 cut(s)	819, 1626
KspI	CCGCGG	1 cut(s)	571
Kzo9I	GATC	7 cut(s)	210, 819, 1125, 1410, 1626, 1748, 1905
LmnI	GCTCC	5 cut(s)	156, 1105, 1138, 1667, 1807
Lsp1109I	GCAGC	3 cut(s)	1202, 1223, 1494
LweI	GCATC	6 cut(s)	481, 1110, 1188, 1230, 1413, 1642
MaeI	CTAG	5 cut(s)	687, 744, 753, 1068, 1338
MaeII	ACGT	2 cut(s)	792, 893
MaeIII	GTNAC	3 cut(s)	476, 958, 1579
MalI	GATC	7 cut(s)	212, 821, 1127, 1412, 1628, 1750, 1907
MbiI	CCGCTC	1 cut(s)	1371
MboI	GATC	7 cut(s)	210, 819, 1125, 1410, 1626, 1748, 1905
MboII	GAAGA	8 cut(s)	63, 331, 369, 752, 1514, 1756, 1805, 1869
MflI	RGATCY	2 cut(s)	1410, 1905
MhlI	GDGCHC	3 cut(s)	462, 862, 1736
MluCI	AATT	9 cut(s)	127, 1013, 1062, 1304, 1342, 1707, 1835, 1890, 1934
MmeI	TCCRAC	1 cut(s)	876
Mph1103I	ATGCAT	3 cut(s)	717, 1203, 1386
MseI	TTAA	5 cut(s)	59, 1017, 1521, 1893, 1998
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	570
MspI	CCGG	7 cut(s)	7, 326, 366, 420, 1172, 1293, 1555
MspR9I	CCNGG	5 cut(s)	7, 326, 421, 1555, 1872
Mva1269I	GAATGC	2 cut(s)	715, 1363
MvaI	CCWGG	1 cut(s)	1872
MvnI	CGCG	2 cut(s)	389, 570
MwoI	GCNNNNNNNGC	2 cut(s)	379, 950
NciI	CCSGG	4 cut(s)	7, 326, 421, 1555
NdeII	GATC	7 cut(s)	210, 819, 1125, 1410, 1626, 1748, 1905
NlaIV	GGNNCC	2 cut(s)	317, 1140
NmuCI	GTSAC	2 cut(s)	476, 1579
NsiI	ATGCAT	3 cut(s)	717, 1203, 1386
NspI	RCATGY	3 cut(s)	466, 1482, 1531
PaeI	GCATGC	1 cut(s)	1482
PaeR7I	CTCGAG	1 cut(s)	906
PceI	AGGCCT	1 cut(s)	359
PciI	ACATGT	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
PctI	GAATGC	2 cut(s)	715, 1363
PfeI	GAWTC	4 cut(s)	206, 434, 799, 805
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	4 cut(s)	569, 1192, 1213, 1484
PscI	ACATGT	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	1736
Psp6I	CCWGG	1 cut(s)	1870
PspFI	CCCAGC	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	1870
PspN4I	GGNNCC	2 cut(s)	317, 1140
PspPI	GGNCC	5 cut(s)	85, 316, 397, 586, 1053
PstNI	CAGNNNCTG	1 cut(s)	1908
PsuI	RGATCY	2 cut(s)	1410, 1905
RseI	CAYNNNNRTG	1 cut(s)	813
SacI	GAGCTC	1 cut(s)	1736
SacII	CCGCGG	1 cut(s)	571
SaqAI	TTAA	5 cut(s)	59, 1017, 1521, 1893, 1998
SatI	GCNGC	4 cut(s)	568, 1191, 1212, 1483
Sau3AI	GATC	7 cut(s)	210, 819, 1125, 1410, 1626, 1748, 1905
Sau96I	GGNCC	5 cut(s)	85, 316, 397, 586, 1053
ScrFI	CCNGG	5 cut(s)	7, 326, 421, 1555, 1872
SduI	GDGCHC	3 cut(s)	462, 862, 1736
SfaNI	GCATC	6 cut(s)	481, 1110, 1188, 1230, 1413, 1642
SfcI	CTRYAG	1 cut(s)	768
Sfr274I	CTCGAG	1 cut(s)	906
Sfr303I	CCGCGG	1 cut(s)	571
SgrBI	CCGCGG	1 cut(s)	571
SinI	GGWCC	2 cut(s)	397, 1053
SlaI	CTCGAG	1 cut(s)	906
SmiMI	CAYNNNNRTG	1 cut(s)	813
SmlI	CTYRAG	1 cut(s)	906
SmoI	CTYRAG	1 cut(s)	906
SphI	GCATGC	1 cut(s)	1482
Sse9I	AATT	9 cut(s)	127, 1013, 1062, 1304, 1342, 1707, 1835, 1890, 1934
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	6 cut(s)	387, 568, 570, 692, 826, 1371
SspI	AATATT	2 cut(s)	1042, 1186
SspMI	CTAG	5 cut(s)	687, 744, 753, 1068, 1338
SstI	GAGCTC	1 cut(s)	1736
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	5 cut(s)	5, 324, 419, 1553, 1870
TaaI	ACNGT	4 cut(s)	542, 1493, 1544, 1829
TaiI	ACGT	2 cut(s)	795, 896
TaqI	TCGA	6 cut(s)	204, 209, 867, 907, 1128, 1312
TaqII	GACCGA	2 cut(s)	495, 1580
TasI	AATT	9 cut(s)	127, 1013, 1062, 1304, 1342, 1707, 1835, 1890, 1934
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	4 cut(s)	206, 434, 799, 805
Tru1I	TTAA	5 cut(s)	59, 1017, 1521, 1893, 1998
Tru9I	TTAA	5 cut(s)	59, 1017, 1521, 1893, 1998
TscAI	CASTG	5 cut(s)	352, 547, 1002, 1270, 1834
TseFI	GTSAC	2 cut(s)	476, 1579
TseI	GCWGC	3 cut(s)	1190, 1211, 1482
Tsp45I	GTSAC	2 cut(s)	476, 1579
TspDTI	ATGAA	6 cut(s)	239, 797, 1715, 1757, 1927, 1979
TspGWI	ACGGA	1 cut(s)	1727
TspRI	CASTG	5 cut(s)	352, 547, 1002, 1270, 1834
VneI	GTGCAC	2 cut(s)	458, 858
VpaK11BI	GGWCC	2 cut(s)	397, 1053
XagI	CCTNNNNNAGG	1 cut(s)	768
XapI	RAATTY	2 cut(s)	1342, 1934
XceI	RCATGY	3 cut(s)	466, 1482, 1531
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1342
XhoI	CTCGAG	1 cut(s)	906
XspI	CTAG	5 cut(s)	687, 744, 753, 1068, 1338
Zsp2I	ATGCAT	3 cut(s)	717, 1203, 1386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.