Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016680

Physical Location & Seq

Genomic Coordinates Reverse (-)

327902 .. 330232

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGTCGCTCAACGTCGGACATTATATGTTTTTGAGGGAACTGGTTGCGGAGGAAACCATGACAAGGCAACCTCTGAATCTGCTGCTGGAAAGTCTGCCCCAAACCATCCTCCAATTTCTGAACCCCTTCACTGCTTCTCTTTCGCAGGCGCGTCAAGCCCACGCCCAAATACTCAAGACTGGCCTCTCCAACGACACCAATGTCACCACCAAGCTGCTCTCTGTCTACGCCAACAACCTCTGCTTTCTCGAAGCAAACCTCGTCCTCGATTCGATTCCGGACCCCAACCTGTTCTCCTTCTCCACCCTAATCCACGCCTTTTCGAAGCTCAATCAGTTCCGCCACGCACTATGTTTGTTCTCTCAAATGTTGTCCCGAGGCCTCGCGCCGGACGGTTTTCTCTTCCCCAGCGTCGTCAAGGCCTGCGCTGGCCCCCCAGCGGCTCCGAGAGCCGGCCGTCAGGTTCACGGCATTGCGTGTGTATCTGGGTTTTCTTTCGATTCGTTTGTGCAGTCATCTTTGGTGCACATGTATGTCAAATGTGACCGGATAAAGGATGCACGCAAGGTTTTCGATAGAGTGCCTCAACGGGATGTGGTTATTTTCAGCGCCTTGATTTCAGGGTATTCTCGGCATGGTTGCGTGGATGAGGCTGTGGGACTCTTGTATGAGATGAGGGGGATGGGTTTAGAGCCCAATGTAGTCTTGTGGAATGGGATGATTGCGGGTTTTAATCAGAGCGGGTTATATGCCGATACTGTGTCTGTTTTAAAGAAGATGCATTCCGAAGGTTTTCGACCTGACGGGTCTAGTATTTCTAGTTCTCTTCCTGCTGTCGGACAGTTGGAGGATTTGGGCATGGGGATTCAGATTCATTGCTATGTGATCAAGCAGGGACTTGTGTCGGACAAATGTGTCGTCAGCGCGCTTATTGATCTGTATGGGAAGTGTGCCTGCGCATTTGAGATGTCACGGTTTTATGATGAAATGGATCAAACGGATGTTGGTGCTTGCAATGCTTTAGTCACGGGGCTTTCGCGAAATGGTCTTGTTGACAACGCACTGGAGATGTTCCAACAATTTAAGGGCCAAGTGGAACTGAACATTGTGTCTTGGACCTCGATAATTGCTAGTTGTTCCCAGAATGGAAAGGATATGGAGGCTTTGGAGCTATTCAGAGAGATGCAGATTGAGGGTGTGAAACCAAACTATGTGACTATCCCTTGCTTGCTTCCAGCTTGCGGTAACATTGCAGCCTTGATGCATGGGAAGGCAACTCACTGTTTCGCTCTCAGGAAGGGGATCTCTAACGATGTGTTTGTGGGTAGTGCATTGATTGACATGTACGCGAAATGTGGAAAAATCCACTTGTCTCGGCTTTGTTTTGATAAATTGCACGCCAGAAATTTGGTCTGCTGGAATGCAGTTATGAGTGGATATGCAATGCATGGAATGGCTAAGGAAACGATGGAGATATTTGATATGATGCAGAGGAGTGGTCAGAAGCCAGATTTTATCAGCTTTACCTGTATACTCTCTGCATGCAGCCAGAACGGTTTGACGGAACAGGGATGGAATTATTTTAAAAGTATGTCAAAGGAGCATGGTCTAGAAGCCAGAGTGGAGCATTATGCTTGCATGGTGACACTTCTCGGACGGGCTGGAAAACTTGAAGAGGCTTATTCCATGATCAAGAAAATGCCCTTCGAACCAGATGCTTGTGTTTGGGGAGCTTTACTAAGTTCTTGTAGAGTTCACAGTAATGTGACTTTAGGTGAGTCTGTTGCAAAGAAGCTCTTCAATATGGAACCGAAAAATCCTGGTAACTACATTCTTCTGTCAAATATTTATGCTTCCAAAGGCATGTGGACGGAAGTCGATAGAGTGAGGGATACAATGAAGAGTCTTGGTTTGAGGAAGAACCCTGGCTGCAGTTGGATTGAACTGAAGAACAAAGTGCACATGCTTCTTGCAGGAGACAAAGGGCATCCGCAAATGAACCAAATTATTGATAAGTTGGATCAGTTGAGCTCGGAGATGAAGAAATCGGGTTACTTCCCCAATACCCACTTTGTATTGCAAGATGTGGAGGAACAGGACAAGGAGCACATTCTGTGCGGACACAGTGAAAAGTTGGCAGTGGCGCTAGGACTTCTGAACACTCCTCCAGGGTCCCCCCTCAGGGTGATTAAGAACCTCAGGATATGTGGTGATTGCCATGCTGTTATAAAATTCATATCTAGCTGTGAAGGAAGAGAGATTTCGGTCAGAGATACGAATCGGTTTCATCATTTTAAAGACGGAGTTTGTTCTTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

777

Amino Acids

85.99

Weight (kDa)

7.48

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	95 - 142	2.9e-07	PPR repeat family
PPR_2	PF13041	197 - 235	4e-07	PPR repeat family
PPR	PF01535	200 - 230	1.5e-07	PPR repeat
PPR_3	PF13812	365 - 416	2.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	368 - 414	9.3e-09	PPR repeat family
PPR	PF01535	370 - 400	1.1e-06	PPR repeat
PPR_2	PF13041	469 - 516	6.3e-10	PPR repeat family
PPR	PF01535	471 - 500	2.9e-06	PPR repeat
E_motif	PF20431	586 - 648	4.4e-25	E motif
DYW_deaminase	PF14432	684 - 776	2.2e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20230
fragaria_vesca	FvH4_2g38000
malus_domestica	MD15G1007100.v1.1
prunus_persica	Prupe.1G360000_v2.0.a1
pyrus_communis	pycom15g00570
rosa_chinensis	RchiOBHm_Chr6g0303611
rosa_laevigata	RLG00000011068
rosa_multiflora	Rmu_ssc0000114.1_g000022
rosa_roxburghii	Rroxscaffold_7G00164580
rosa_rugosa	Rorug06G0322800
rosa_samantha	Rh6AG437300 Rh6BG466000 Rh6DG436000
rosa_wichuraiana	Rw6G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2228
AasI	GACNNNNNNGTC	2 cut(s)	200, 914
Acc16I	TGCGCA	1 cut(s)	958
AccBSI	CCGCTC	1 cut(s)	741
AccI	GTMKAC	2 cut(s)	225, 1531
AccII	CGCG	5 cut(s)	151, 386, 926, 1039, 1349
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	8 cut(s)	47, 340, 440, 725, 741, 1242, 1991, 2118
AclWI	GGATC	3 cut(s)	999, 1310, 2028
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	1405, 2231
AcuI	CTGAAG	1 cut(s)	1967
AfaI	GTAC	1 cut(s)	1346
AfiI	CCNNNNNNNGG	9 cut(s)	63, 388, 439, 452, 553, 836, 1241, 2181, 2182
AflIII	ACRYGT	2 cut(s)	528, 1341
AgsI	TTSAA	3 cut(s)	1673, 1801, 1943
AjnI	CCWGG	3 cut(s)	1819, 1924, 2167
AluBI	AGCT	9 cut(s)	214, 328, 1171, 1238, 1521, 1733, 1795, 2031, 2244
AluI	AGCT	9 cut(s)	214, 328, 1171, 1238, 1521, 1733, 1795, 2031, 2244
Alw21I	GWGCWC	4 cut(s)	528, 1962, 2033, 2109
Alw26I	GTCTC	2 cut(s)	1377, 1971
Alw44I	GTGCAC	2 cut(s)	524, 1958
AlwI	GGATC	3 cut(s)	999, 1310, 2028
Ama87I	CYCGRG	1 cut(s)	375
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	6 cut(s)	181, 379, 420, 430, 454, 1087
ApaLI	GTGCAC	2 cut(s)	524, 1958
ApeKI	GCWGC	5 cut(s)	82, 214, 1253, 1545, 1929
ApoI	RAATTY	2 cut(s)	1405, 2231
ArsI	GACNNNNNNTTYG	2 cut(s)	903, 935
Asp700I	GAANNNNTTC	3 cut(s)	125, 792, 1796
AspLEI	GCGC	8 cut(s)	151, 388, 428, 611, 926, 928, 959, 2146
AspS9I	GGNCC	5 cut(s)	280, 431, 1087, 1116, 2172
AsuHPI	GGTGA	5 cut(s)	196, 1654, 1787, 2197, 2222
AsuII	TTCGAA	2 cut(s)	323, 1707
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	3 cut(s)	280, 1116, 2172
AxyI	CCTNAGG	2 cut(s)	2180, 2198
BaeGI	GKGCMC	2 cut(s)	528, 1962
BanII	GRGCYC	2 cut(s)	696, 2033
Bbv12I	GWGCWC	4 cut(s)	528, 1962, 2033, 2109
BbvI	GCAGC	5 cut(s)	69, 201, 1265, 1557, 1916
BccI	CCATC	4 cut(s)	113, 676, 1462, 1566
BceAI	ACGGC	2 cut(s)	441, 484
BcgI	CGANNNNNNTGC	4 cut(s)	553, 587, 1697, 1731
BciT130I	CCWGG	3 cut(s)	1821, 1926, 2169
BciVI	GTATCC	1 cut(s)	1885
BclI	TGATCA	2 cut(s)	885, 1689
BcoDI	GTCTC	2 cut(s)	1377, 1971
BfaI	CTAG	6 cut(s)	810, 819, 1131, 1610, 2147, 2241
BfmI	CTRYAG	1 cut(s)	1930
BfoI	RGCGCY	2 cut(s)	612, 2147
BfuI	GTATCC	1 cut(s)	1885
BisI	GCNGC	6 cut(s)	83, 215, 441, 1254, 1546, 1930
BlsI	GCNGC	6 cut(s)	84, 216, 442, 1255, 1547, 1931
Bme1390I	CCNGG	3 cut(s)	1821, 1926, 2169
Bme18I	GGWCC	3 cut(s)	280, 1116, 2172
BmeT110I	CYCGRG	1 cut(s)	375
BmgT120I	GGNCC	5 cut(s)	280, 431, 1087, 1116, 2172
BmiI	GGNNCC	6 cut(s)	282, 433, 444, 1809, 2173, 2174
BmrFI	CCNGG	3 cut(s)	1821, 1926, 2169
BmsI	GCATC	7 cut(s)	547, 768, 1173, 1251, 1476, 1705, 1996
BoxI	GACNNNNGTC	2 cut(s)	901, 1874
BpmI	CTGGAG	2 cut(s)	1085, 2151
Bpu10I	CCTNAGC	1 cut(s)	1458
Bpu14I	TTCGAA	2 cut(s)	323, 1707
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	2277
BsaJI	CCNNGG	3 cut(s)	376, 1924, 2168
BsaWI	WCCGGW	2 cut(s)	277, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	9 cut(s)	63, 388, 439, 452, 553, 836, 1241, 2181, 2182
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	3 cut(s)	45, 184, 1068
Bse21I	CCTNAGG	2 cut(s)	2180, 2198
Bse3DI	GCAATG	5 cut(s)	471, 874, 1021, 1248, 1449
Bse8I	GATNNNNATC	1 cut(s)	2277
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	3 cut(s)	1821, 1926, 2169
BseDI	CCNNGG	3 cut(s)	376, 1924, 2168
BseGI	GGATG	9 cut(s)	105, 562, 598, 652, 687, 723, 1006, 1577, 1987
BseJI	GATNNNNATC	1 cut(s)	2277
BseLI	CCNNNNNNNGG	9 cut(s)	63, 388, 439, 452, 553, 836, 1241, 2181, 2182
BseMI	GCAATG	5 cut(s)	471, 874, 1021, 1248, 1449
BseMII	CTCAG	3 cut(s)	1306, 2194, 2212
BseNI	ACTGG	3 cut(s)	45, 184, 1068
BsePI	GCGCGC	1 cut(s)	924
BseRI	GAGGAG	2 cut(s)	1507, 2154
BseSI	GKGCMC	2 cut(s)	528, 1962
BseX3I	CGGCCG	1 cut(s)	454
BseXI	GCAGC	5 cut(s)	69, 201, 1265, 1557, 1916
BseYI	CCCAGC	2 cut(s)	407, 436
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	5 cut(s)	151, 386, 926, 1039, 1349
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	6 cut(s)	183, 381, 422, 432, 456, 1089
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	4 cut(s)	528, 1962, 2033, 2109
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	4 cut(s)	278, 389, 453, 547
BslFI	GGGAC	4 cut(s)	358, 672, 909, 2158
BslI	CCNNNNNNNGG	9 cut(s)	63, 388, 439, 452, 553, 836, 1241, 2181, 2182
BsmAI	GTCTC	2 cut(s)	1377, 1971
BsmFI	GGGAC	4 cut(s)	358, 672, 909, 2158
BsmI	GAATGC	2 cut(s)	781, 1426
BsnI	GGCC	6 cut(s)	183, 381, 422, 432, 456, 1089
BsoBI	CYCGRG	1 cut(s)	375
Bsp119I	TTCGAA	2 cut(s)	323, 1707
Bsp1286I	GDGCHC	5 cut(s)	528, 696, 1962, 2033, 2109
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	6 cut(s)	885, 934, 991, 1302, 1689, 2020
Bsp68I	TCGCGA	1 cut(s)	1039
BspACI	CCGC	8 cut(s)	47, 340, 440, 725, 741, 1242, 1991, 2118
BspANI	GGCC	6 cut(s)	183, 381, 422, 432, 456, 1089
BspCNI	CTCAG	3 cut(s)	1305, 2193, 2211
BspEI	TCCGGA	1 cut(s)	277
BspFNI	CGCG	5 cut(s)	151, 386, 926, 1039, 1349
BspLI	GGNNCC	6 cut(s)	282, 433, 444, 1809, 2173, 2174
BspMAI	CTGCAG	1 cut(s)	1934
BspPI	GGATC	3 cut(s)	999, 1310, 2028
BspQI	GCTCTTC	1 cut(s)	1802
BspT104I	TTCGAA	2 cut(s)	323, 1707
BsrBI	CCGCTC	1 cut(s)	741
BsrDI	GCAATG	5 cut(s)	471, 874, 1021, 1248, 1449
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	3 cut(s)	45, 184, 1068
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	3 cut(s)	376, 1924, 2168
BssHII	GCGCGC	1 cut(s)	924
BssMI	GATC	6 cut(s)	885, 934, 991, 1302, 1689, 2020
BssNAI	GTATAC	1 cut(s)	1532
Bst1107I	GTATAC	1 cut(s)	1532
Bst2UI	CCWGG	3 cut(s)	1821, 1926, 2169
Bst4CI	ACNGT	8 cut(s)	395, 760, 843, 975, 1283, 1556, 1760, 2126
Bst6I	CTCTTC	6 cut(s)	407, 831, 1668, 1802, 1895, 2248
BstBI	TTCGAA	2 cut(s)	323, 1707
BstDEI	CTNAG	5 cut(s)	1292, 1458, 1739, 2180, 2198
BstF5I	GGATG	9 cut(s)	105, 562, 598, 652, 687, 723, 1006, 1577, 1987
BstFNI	CGCG	5 cut(s)	151, 386, 926, 1039, 1349
BstH2I	RGCGCY	2 cut(s)	612, 2147
BstHHI	GCGC	8 cut(s)	151, 388, 428, 611, 926, 928, 959, 2146
BstKTI	GATC	6 cut(s)	888, 937, 994, 1305, 1692, 2023
BstMAI	GTCTC	2 cut(s)	1377, 1971
BstMBI	GATC	6 cut(s)	885, 934, 991, 1302, 1689, 2020
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 449, 1016
BstNI	CCWGG	3 cut(s)	1821, 1926, 2169
BstNSI	RCATGY	5 cut(s)	532, 1345, 1545, 1867, 1966
BstPAI	GACNNNNGTC	2 cut(s)	901, 1874
BstSCI	CCNGG	3 cut(s)	1819, 1924, 2167
BstSFI	CTRYAG	1 cut(s)	1930
BstSLI	GKGCMC	2 cut(s)	528, 1962
BstUI	CGCG	5 cut(s)	151, 386, 926, 1039, 1349
BstV1I	GCAGC	5 cut(s)	69, 201, 1265, 1557, 1916
BstX2I	RGATCY	1 cut(s)	1302
BstXI	CCANNNNNNTGG	1 cut(s)	1408
BstYI	RGATCY	1 cut(s)	1302
BstZ17I	GTATAC	1 cut(s)	1532
BstZI	CGGCCG	1 cut(s)	454
Bsu36I	CCTNAGG	2 cut(s)	2180, 2198
BsuI	GTATCC	1 cut(s)	1885
BsuRI	GGCC	6 cut(s)	183, 381, 422, 432, 456, 1089
BtsCI	GGATG	9 cut(s)	105, 562, 598, 652, 687, 723, 1006, 1577, 1987
BtsI	GCAGTG	2 cut(s)	129, 2145
BtsIMutI	CAGTG	5 cut(s)	129, 1061, 1279, 2131, 2145
BtuMI	TCGCGA	1 cut(s)	1039
CfoI	GCGC	8 cut(s)	151, 388, 428, 611, 926, 928, 959, 2146
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	5 cut(s)	280, 431, 1087, 1116, 2172
CseI	GACGC	2 cut(s)	140, 400
Csp6I	GTAC	1 cut(s)	1345
CviQI	GTAC	1 cut(s)	1345
DdeI	CTNAG	5 cut(s)	1292, 1458, 1739, 2180, 2198
DpnI	GATC	6 cut(s)	887, 936, 993, 1304, 1691, 2022
DpnII	GATC	6 cut(s)	885, 934, 991, 1302, 1689, 2020
DraI	TTTAAA	3 cut(s)	771, 1585, 2296
DrdI	GACNNNNNNGTC	2 cut(s)	200, 914
DseDI	GACNNNNNNGTC	2 cut(s)	200, 914
EaeI	YGGCCR	1 cut(s)	454
EagI	CGGCCG	1 cut(s)	454
Eam1104I	CTCTTC	6 cut(s)	407, 831, 1668, 1802, 1895, 2248
EarI	CTCTTC	6 cut(s)	407, 831, 1668, 1802, 1895, 2248
EciI	GGCGGA	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	2031
EclXI	CGGCCG	1 cut(s)	454
Eco147I	AGGCCT	2 cut(s)	381, 422
Eco24I	GRGCYC	2 cut(s)	696, 2033
Eco47I	GGWCC	3 cut(s)	280, 1116, 2172
Eco52I	CGGCCG	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	2031
Eco57I	CTGAAG	1 cut(s)	1967
Eco81I	CCTNAGG	2 cut(s)	2180, 2198
Eco88I	CYCGRG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	2031
EcoO109I	RGGNCCY	1 cut(s)	2172
EcoRII	CCWGG	3 cut(s)	1819, 1924, 2167
EcoT22I	ATGCAT	3 cut(s)	783, 1266, 1449
EcoT38I	GRGCYC	2 cut(s)	696, 2033
FalI	AAGNNNNNCTT	2 cut(s)	1781, 1813
FaqI	GGGAC	4 cut(s)	358, 672, 909, 2158
FauI	CCCGC	2 cut(s)	718, 734
FbaI	TGATCA	2 cut(s)	885, 1689
FblI	GTMKAC	2 cut(s)	225, 1531
Fnu4HI	GCNGC	6 cut(s)	83, 215, 441, 1254, 1546, 1930
FokI	GGATG	9 cut(s)	92, 569, 605, 659, 694, 730, 1013, 1584, 1974
FriOI	GRGCYC	2 cut(s)	696, 2033
Fsp4HI	GCNGC	6 cut(s)	83, 215, 441, 1254, 1546, 1930
FspBI	CTAG	6 cut(s)	810, 819, 1131, 1610, 2147, 2241
FspI	TGCGCA	1 cut(s)	958
GlaI	GCGC	8 cut(s)	150, 387, 427, 610, 925, 927, 958, 2145
GluI	GCNGC	6 cut(s)	83, 215, 441, 1254, 1546, 1930
GsaI	CCCAGC	2 cut(s)	411, 440
GsuI	CTGGAG	2 cut(s)	1085, 2151
HaeII	RGCGCY	2 cut(s)	612, 2147
HaeIII	GGCC	6 cut(s)	183, 381, 422, 432, 456, 1089
HapII	CCGG	4 cut(s)	278, 389, 453, 547
HgaI	GACGC	2 cut(s)	140, 400
HhaI	GCGC	8 cut(s)	151, 388, 428, 611, 926, 928, 959, 2146
Hin6I	GCGC	8 cut(s)	149, 386, 426, 609, 924, 926, 957, 2144
HinP1I	GCGC	8 cut(s)	149, 386, 426, 609, 924, 926, 957, 2144
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HpaII	CCGG	4 cut(s)	278, 389, 453, 547
HphI	GGTGA	5 cut(s)	196, 1654, 1787, 2197, 2222
Hpy166II	GTNNAC	8 cut(s)	226, 466, 526, 1054, 1532, 1756, 1869, 1960
Hpy188III	TCNNGA	9 cut(s)	175, 248, 278, 375, 1038, 1294, 1610, 1693, 2200
Hpy8I	GTNNAC	8 cut(s)	226, 466, 526, 1054, 1532, 1756, 1869, 1960
Hpy99I	CGWCG	2 cut(s)	17, 416
HpyAV	CCTTC	7 cut(s)	136, 307, 782, 1264, 1291, 1714, 2243
HpyCH4III	ACNGT	8 cut(s)	395, 760, 843, 975, 1283, 1556, 1760, 2126
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 449, 1016
HpyF3I	CTNAG	5 cut(s)	1292, 1458, 1739, 2180, 2198
HpySE526I	ACGT	1 cut(s)	12
HspAI	GCGC	8 cut(s)	149, 386, 426, 609, 924, 926, 957, 2144
KflI	GGGWCCC	1 cut(s)	2172
Kpn2I	TCCGGA	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	452
KroNI	GCCGGC	1 cut(s)	454
Ksp22I	TGATCA	2 cut(s)	885, 1689
Kzo9I	GATC	6 cut(s)	885, 934, 991, 1302, 1689, 2020
LguI	GCTCTTC	1 cut(s)	1802
LmnI	GCTCC	6 cut(s)	448, 1168, 1600, 1624, 1730, 2104
Lsp1109I	GCAGC	5 cut(s)	69, 201, 1265, 1557, 1916
LweI	GCATC	7 cut(s)	547, 768, 1173, 1251, 1476, 1705, 1996
MaeI	CTAG	6 cut(s)	810, 819, 1131, 1610, 2147, 2241
MaeII	ACGT	1 cut(s)	12
MalI	GATC	6 cut(s)	887, 936, 993, 1304, 1691, 2022
MbiI	CCGCTC	1 cut(s)	741
MboI	GATC	6 cut(s)	885, 934, 991, 1302, 1689, 2020
MflI	RGATCY	1 cut(s)	1302
MhlI	GDGCHC	5 cut(s)	528, 696, 1962, 2033, 2109
MluCI	AATT	8 cut(s)	113, 1079, 1125, 1391, 1405, 1576, 2004, 2231
MlyI	GAGTC	3 cut(s)	654, 1787, 1912
MmeI	TCCRAC	7 cut(s)	213, 817, 825, 885, 1099, 1916, 1998
Mph1103I	ATGCAT	3 cut(s)	783, 1266, 1449
MroI	TCCGGA	1 cut(s)	277
MroNI	GCCGGC	1 cut(s)	452
MroXI	GAANNNNTTC	3 cut(s)	125, 792, 1796
MseI	TTAA	6 cut(s)	732, 770, 1083, 1584, 2190, 2295
MslI	CAYNNNNRTG	3 cut(s)	531, 879, 1761
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	4 cut(s)	278, 389, 453, 547
MspR9I	CCNGG	3 cut(s)	1821, 1926, 2169
Mva1269I	GAATGC	2 cut(s)	781, 1426
MvaI	CCWGG	3 cut(s)	1821, 1926, 2169
MvnI	CGCG	5 cut(s)	151, 386, 926, 1039, 1349
MwoI	GCNNNNNNNGC	3 cut(s)	155, 449, 1016
NaeI	GCCGGC	1 cut(s)	454
NdeII	GATC	6 cut(s)	885, 934, 991, 1302, 1689, 2020
NgoMIV	GCCGGC	1 cut(s)	452
NlaIV	GGNNCC	6 cut(s)	282, 433, 444, 1809, 2173, 2174
NmeAIII	GCCGAG	2 cut(s)	610, 1354
NmuCI	GTSAC	7 cut(s)	202, 542, 969, 1024, 1213, 1642, 1765
NruI	TCGCGA	1 cut(s)	1039
NsbI	TGCGCA	1 cut(s)	958
NsiI	ATGCAT	3 cut(s)	783, 1266, 1449
NspI	RCATGY	5 cut(s)	532, 1345, 1545, 1867, 1966
NspV	TTCGAA	2 cut(s)	323, 1707
PaeI	GCATGC	1 cut(s)	1545
PauI	GCGCGC	1 cut(s)	924
PceI	AGGCCT	2 cut(s)	381, 422
PciI	ACATGT	2 cut(s)	528, 1341
PciSI	GCTCTTC	1 cut(s)	1802
PctI	GAATGC	2 cut(s)	781, 1426
PdiI	GCCGGC	1 cut(s)	454
PdmI	GAANNNNTTC	3 cut(s)	125, 792, 1796
PfeI	GAWTC	7 cut(s)	76, 269, 274, 500, 865, 871, 2278
PkrI	GCNGC	6 cut(s)	84, 216, 442, 1255, 1547, 1931
PleI	GAGTC	3 cut(s)	654, 1786, 1911
PpsI	GAGTC	3 cut(s)	654, 1786, 1911
PpuMI	RGGWCCY	1 cut(s)	2172
PscI	ACATGT	2 cut(s)	528, 1341
PshAI	GACNNNNGTC	2 cut(s)	901, 1874
PsiI	TTATAA	1 cut(s)	2228
Psp124BI	GAGCTC	1 cut(s)	2033
Psp5II	RGGWCCY	1 cut(s)	2172
Psp6I	CCWGG	3 cut(s)	1819, 1924, 2167
PspFI	CCCAGC	2 cut(s)	407, 436
PspGI	CCWGG	3 cut(s)	1819, 1924, 2167
PspN4I	GGNNCC	6 cut(s)	282, 433, 444, 1809, 2173, 2174
PspPI	GGNCC	5 cut(s)	280, 431, 1087, 1116, 2172
PspPPI	RGGWCCY	1 cut(s)	2172
PsrI	GAACNNNNNNTAC	2 cut(s)	805, 837
PstI	CTGCAG	1 cut(s)	1934
PsuI	RGATCY	1 cut(s)	1302
PteI	GCGCGC	1 cut(s)	924
RruI	TCGCGA	1 cut(s)	1039
RsaI	GTAC	1 cut(s)	1346
RsaNI	GTAC	1 cut(s)	1345
RseI	CAYNNNNRTG	3 cut(s)	531, 879, 1761
SacI	GAGCTC	1 cut(s)	2033
SapI	GCTCTTC	1 cut(s)	1802
SaqAI	TTAA	6 cut(s)	732, 770, 1083, 1584, 2190, 2295
SatI	GCNGC	6 cut(s)	83, 215, 441, 1254, 1546, 1930
Sau3AI	GATC	6 cut(s)	885, 934, 991, 1302, 1689, 2020
Sau96I	GGNCC	5 cut(s)	280, 431, 1087, 1116, 2172
SchI	GAGTC	3 cut(s)	654, 1787, 1912
ScrFI	CCNGG	3 cut(s)	1821, 1926, 2169
SduI	GDGCHC	5 cut(s)	528, 696, 1962, 2033, 2109
SfaNI	GCATC	7 cut(s)	547, 768, 1173, 1251, 1476, 1705, 1996
SfcI	CTRYAG	1 cut(s)	1930
SfuI	TTCGAA	2 cut(s)	323, 1707
SinI	GGWCC	3 cut(s)	280, 1116, 2172
SmiMI	CAYNNNNRTG	3 cut(s)	531, 879, 1761
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	1545
Sse9I	AATT	8 cut(s)	113, 1079, 1125, 1391, 1405, 1576, 2004, 2231
SseBI	AGGCCT	2 cut(s)	381, 422
SsiI	CCGC	8 cut(s)	47, 340, 440, 725, 741, 1242, 1991, 2118
SspI	AATATT	1 cut(s)	1846
SspMI	CTAG	6 cut(s)	810, 819, 1131, 1610, 2147, 2241
SstI	GAGCTC	1 cut(s)	2033
StuI	AGGCCT	2 cut(s)	381, 422
StyD4I	CCNGG	3 cut(s)	1819, 1924, 2167
TaaI	ACNGT	8 cut(s)	395, 760, 843, 975, 1283, 1556, 1760, 2126
TaiI	ACGT	1 cut(s)	15
TaqII	GACCGA	1 cut(s)	2254
TasI	AATT	8 cut(s)	113, 1079, 1125, 1391, 1405, 1576, 2004, 2231
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	7 cut(s)	76, 269, 274, 500, 865, 871, 2278
Tru1I	TTAA	6 cut(s)	732, 770, 1083, 1584, 2190, 2295
Tru9I	TTAA	6 cut(s)	732, 770, 1083, 1584, 2190, 2295
TscAI	CASTG	5 cut(s)	136, 1068, 1286, 2131, 2145
TseFI	GTSAC	7 cut(s)	202, 542, 969, 1024, 1213, 1642, 1765
TseI	GCWGC	5 cut(s)	82, 214, 1253, 1545, 1929
Tsp45I	GTSAC	7 cut(s)	202, 542, 969, 1024, 1213, 1642, 1765
TspDTI	ATGAA	7 cut(s)	863, 999, 1913, 2012, 2054, 2224, 2276
TspGWI	ACGGA	4 cut(s)	1013, 1577, 1886, 2316
TspRI	CASTG	5 cut(s)	136, 1068, 1286, 2131, 2145
VneI	GTGCAC	2 cut(s)	524, 1958
VpaK11BI	GGWCC	3 cut(s)	280, 1116, 2172
XapI	RAATTY	2 cut(s)	1405, 2231
XbaI	TCTAGA	1 cut(s)	1609
XceI	RCATGY	5 cut(s)	532, 1345, 1545, 1867, 1966
XmiI	GTMKAC	2 cut(s)	225, 1531
XmnI	GAANNNNTTC	3 cut(s)	125, 792, 1796
XspI	CTAG	6 cut(s)	810, 819, 1131, 1610, 2147, 2241
Zsp2I	ATGCAT	3 cut(s)	783, 1266, 1449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.