Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016680

Physical Location & Seq

Genomic Coordinates Reverse (-)

62109341 .. 62111608

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G037850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGAGCCGGCAAGTTCTCAATCTCTGTGACCATTTGCTTCCCAAACTCGTCCACTTGTTAAACCCCTCATCTTCCTTATCACAGGCCCAACAAGCCCATGCCCAGATTCTGAAAACAGGTCTCTCCAATTACACCAATCTCACCACCAAACTCCTTTCTCTCTACGCCAACACCCTCTGCTTTGCAGAAGCCAAACTCGTCCTCGATTCGATCCCACACCCCAACTTGTTCTCTTTCTCCACCCTCATTCATGCCTTCTCAAAGCTCAATAGCTTCGGCAATGCACTTGCCTTGTTCTCCCAAATGTTATCTCGGGGCCTCGTCCCGGATAGCTTCCTCTTCCCCAGTGTCGTCAAGGCCTGTGCCGGGTTGCAATCTTCGCAGTCCGCGAAACAGGTCCATGCGATTTCCTTTGCTTCCGGGTTCGGTTTCGATTCGTTTGTGCAATCGTCGTTGGTGCACATGTATATCAAATGTGACCGAATGAGGGATGCACAGAAGGTGTTTGATAGAGTGCCTGAGAGAGATGTGATTATTTACAGTGCTTTGATTTCTGGGTATTCTCGCCGCGGGTGTGTTGATGACGCCCTGAAGCTTTTAGATGAGATGAGGGGTTTGGGTTTTGAGCCAAATGTGGTGTTGTGGAATGGGATGATTGCCGGGTTTAGGCAGAGCAAGTTGTATGCTAGTACAGTTGCCGTGCTTCAGAAAATGCATTCGGAAGGATTTGAACCCGATGGCTCTAGTATTTCTAGTGTTCTTCCTGCTGTAGGGGACTTGGGGGGTTTAGACGTTGGGATTCAGATTCATGGCTATGTGATCAAGCGGGGACTAAAGTCGGACAAGTGTGTTGTTAGTGCACTTGTTGATATGTATGGGAAGTGTGCCTGCACGTCGGACATGTCTCGAGTTGTTGGTGAAATGGAGGAAATAGATGTTGGTGCTTGCAATGCTTTAGTTACAGGGCTTGCCCGAAATGGTCTTGTTGACAATGCACTGGAGGTGTTCAGGCAATTTAAGGGCAAAGGAGTGGAACTCAATATTGTGTCTTGGACCTCCATAATTGCTAGTGGTTCCCAAAATGGGAAGGATATGGAGGCTTTGGAGCTTTTTAGAGAGATGCAGATTGAGGGGGTGGAGCCAAACTCTATCACTATTTCTTGCTTGCTTCCGGCTTGTGGCAATATTGCAGCCTTGATGCATGGGAAGGCAGCCCATTGTTTCGCTCTCAGGAGGGGGATGCTTAGTGATGTGTATGTGGGCAGTGCATTGATTGATATGTATGCAAACTGCGGCAAAATCCAATTATCTCGACTTTGTTTTGATAAAATGCCCACTAGGAATTTGGTATGCTGGAATGCAGTTATGAGCGGATATGCAATGCATGGAAAAGCTAGGGAAACTATGGAGATCTTTCGTATGATGCAGAGGAGTGGACAGAAGCCCGATATCATCAGCTTCACCTGTTTATTGTCTGCATGCAGCCAGAACGGTCTAACAGAAGATGGATGGTATTATTTTAACAGCATGTCAAAAGAACACGGTATAGAAGCCCAGATAGAACATTACGCTTGCATGGTTACGCTACTCGGTCGTGCTGGAAAACTTGATGAGGCTTATTCCATGATCAAGAAAATGCCATTTGAACCTGATGCTTGTGTTTGGGGAGCTTTGCTAAGTTCTTGTAGAGTTCACAACAATGTGACTTTAGGGGAGTCTACTGCAAAGAAGCTCTTCAATTTAGAACCGGAAAATCCTGGGAACTACATTCTGTTGTCCAATATTTATGCTTCGAAGGGCATGTGGACTGAAGTAGATAGAGTGAGAGATACGATGAAGAGTCTGGGATTGAGGAAGAACCCTGGCTGCAGTTGGATCGAATTCAAGAACAAAGTTCACATGCTTCTTGTAGGAGACAAAGCACATCCTCAAATGAACCAAATTACGGAAAAGTTGAACAGATTGAGCTCAAAGATGAAGAGATCAGGCTACTTCCCCGATACCCACTTTGTATTGCAAGATGTGGAAGAACAAGAGAAGGAGCAGATTTTGTGTGGACACAGTGAGAAATTGGCAGTAGTGTTGGGGCTTCTGAACACTCCTCCAGGGTCTTCCCTTAGGGTAATTAAGAACCTCAGGATCTGTGGTGATTGTCATTCTGTTATCAAATTCATATCCAGCTTGGAAGGGAGAGAGATTTCAGTCAGAGACACCAATCGCTTTCATCATTTTAAAGATGGGGTTTGTTCTTGTGGGGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

755

Amino Acids

83.4

Weight (kDa)

8.16

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 122	1.9e-06	PPR repeat family
PPR_2	PF13041	175 - 222	8.4e-10	PPR repeat family
PPR_1	PF12854	175 - 204	6.1e-08	PPR repeat
PPR	PF01535	179 - 208	6.1e-08	PPR repeat
PPR_2	PF13041	312 - 355	3.4e-06	PPR repeat family
PPR_3	PF13812	335 - 395	6.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	347 - 394	2.9e-09	PPR repeat family
PPR_2	PF13041	448 - 495	6.2e-11	PPR repeat family
PPR	PF01535	450 - 479	4.2e-06	PPR repeat
E_motif	PF20431	565 - 627	4.2e-25	E motif
Eplus_motif	PF20430	632 - 659	3.1e-06	E+ motif
DYW_deaminase	PF14432	663 - 755	2.1e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20230
fragaria_vesca	FvH4_2g38000
malus_domestica	MD15G1007100.v1.1
prunus_persica	Prupe.1G360000_v2.0.a1
pyrus_communis	pycom15g00570
rosa_chinensis	RchiOBHm_Chr6g0303611
rosa_laevigata	RLG00000011068
rosa_multiflora	Rmu_ssc0000114.1_g000022
rosa_roxburghii	Rroxscaffold_7G00164580
rosa_rugosa	Rorug06G0322800
rosa_samantha	Rh6AG437300 Rh6BG466000 Rh6DG436000
rosa_wichuraiana	Rw6G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1371
AccI	GTMKAC	1 cut(s)	1718
AccII	CGCG	2 cut(s)	389, 570
AciI	CCGC	6 cut(s)	387, 568, 570, 826, 1293, 1371
AclWI	GGATC	3 cut(s)	205, 1883, 2147
AcsI	RAATTY	3 cut(s)	1342, 1880, 2168
AcuI	CTGAAG	3 cut(s)	611, 689, 1830
AcyI	GRCGYC	1 cut(s)	585
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	8 cut(s)	325, 366, 487, 666, 770, 1083, 1178, 1945
AflIII	ACRYGT	2 cut(s)	462, 900
AgsI	TTSAA	5 cut(s)	731, 1646, 1738, 1885, 1957
AjiI	CACGTC	1 cut(s)	894
AjnI	CCWGG	3 cut(s)	1756, 1861, 2104
AjuI	GAANNNNNNNTTGG	2 cut(s)	921, 953
Alw21I	GWGCWC	3 cut(s)	462, 862, 1970
Alw26I	GTCTC	4 cut(s)	125, 909, 1908, 2202
Alw44I	GTGCAC	2 cut(s)	458, 858
AlwI	GGATC	3 cut(s)	205, 1883, 2147
AlwNI	CAGNNNCTG	2 cut(s)	109, 2142
Ama87I	CYCGRG	2 cut(s)	312, 906
AoxI	GGCC	3 cut(s)	84, 316, 357
ApaLI	GTGCAC	2 cut(s)	458, 858
ApeKI	GCWGC	4 cut(s)	1190, 1211, 1482, 1866
ApoI	RAATTY	3 cut(s)	1342, 1880, 2168
Asp700I	GAANNNNTTC	1 cut(s)	1733
AspS9I	GGNCC	4 cut(s)	85, 316, 397, 1053
AsuC2I	CCSGG	4 cut(s)	326, 367, 421, 661
AsuHPI	GGTGA	4 cut(s)	133, 929, 1453, 2159
AsuII	TTCGAA	1 cut(s)	1793
AvaI	CYCGRG	2 cut(s)	312, 906
AvaII	GGWCC	2 cut(s)	397, 1053
AxyI	CCTNAGG	2 cut(s)	2117, 2135
BaeGI	GKGCMC	2 cut(s)	462, 862
BanII	GRGCYC	1 cut(s)	1970
BbsI	GAAGAC	1 cut(s)	2103
Bbv12I	GWGCWC	3 cut(s)	462, 862, 1970
BbvI	GCAGC	4 cut(s)	1202, 1223, 1494, 1853
BccI	CCATC	4 cut(s)	731, 1499, 1503, 2231
BceAI	ACGGC	1 cut(s)	683
BcgI	CGANNNNNNTGC	2 cut(s)	1858, 1892
BciT130I	CCWGG	3 cut(s)	1758, 1863, 2106
BclI	TGATCA	2 cut(s)	819, 1626
BcnI	CCSGG	4 cut(s)	326, 367, 421, 661
BcoDI	GTCTC	4 cut(s)	125, 909, 1908, 2202
BfaI	CTAG	6 cut(s)	687, 744, 753, 1068, 1338, 1395
BfmI	CTRYAG	2 cut(s)	768, 1867
BglII	AGATCT	1 cut(s)	1410
BisI	GCNGC	6 cut(s)	568, 1191, 1212, 1294, 1483, 1867
BlsI	GCNGC	6 cut(s)	569, 1192, 1213, 1295, 1484, 1868
Bme1390I	CCNGG	7 cut(s)	326, 367, 421, 661, 1758, 1863, 2106
Bme18I	GGWCC	2 cut(s)	397, 1053
BmeT110I	CYCGRG	2 cut(s)	312, 906
BmgBI	CACGTC	1 cut(s)	894
BmgT120I	GGNCC	4 cut(s)	85, 316, 397, 1053
BmiI	GGNNCC	3 cut(s)	317, 1075, 1140
BmrFI	CCNGG	7 cut(s)	326, 367, 421, 661, 1758, 1863, 2106
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	6 cut(s)	481, 1110, 1188, 1230, 1413, 1642
BmuI	ACTGGG	1 cut(s)	339
BoxI	GACNNNNGTC	1 cut(s)	835
BpiI	GAAGAC	1 cut(s)	2103
BplI	GAGNNNNNCTC	4 cut(s)	1020, 1052, 1130, 1162
BpmI	CTGGAG	2 cut(s)	1019, 2088
Bpu14I	TTCGAA	1 cut(s)	1793
BpuMI	CCSGG	4 cut(s)	326, 367, 421, 661
BsaHI	GRCGYC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	568, 1757, 1861, 2105
BsaWI	WCCGGW	1 cut(s)	1747
Bsc4I	CCNNNNNNNGG	8 cut(s)	325, 366, 487, 666, 770, 1083, 1178, 1945
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	3 cut(s)	345, 1002, 2267
Bse21I	CCTNAGG	2 cut(s)	2117, 2135
Bse3DI	GCAATG	3 cut(s)	286, 955, 1386
BseBI	CCWGG	3 cut(s)	1758, 1863, 2106
BseDI	CCNNGG	4 cut(s)	568, 1757, 1861, 2105
BseGI	GGATG	5 cut(s)	496, 657, 1245, 1514, 1924
BseLI	CCNNNNNNNGG	8 cut(s)	325, 366, 487, 666, 770, 1083, 1178, 1945
BseMI	GCAATG	3 cut(s)	286, 955, 1386
BseMII	CTCAG	3 cut(s)	510, 1243, 2149
BseNI	ACTGG	3 cut(s)	345, 1002, 2267
BseRI	GAGGAG	2 cut(s)	1444, 2091
BseSI	GKGCMC	2 cut(s)	462, 862
BseXI	GCAGC	4 cut(s)	1202, 1223, 1494, 1853
BsgI	GTGCAG	1 cut(s)	874
Bsh1236I	CGCG	2 cut(s)	389, 570
Bsh1285I	CGRYCG	1 cut(s)	1594
BshFI	GGCC	3 cut(s)	86, 318, 359
BsiEI	CGRYCG	1 cut(s)	1594
BsiHKAI	GWGCWC	3 cut(s)	462, 862, 1970
BsiHKCI	CYCGRG	2 cut(s)	312, 906
BsiSI	CCGG	7 cut(s)	7, 326, 366, 420, 660, 1172, 1748
BslFI	GGGAC	3 cut(s)	308, 788, 843
BslI	CCNNNNNNNGG	8 cut(s)	325, 366, 487, 666, 770, 1083, 1178, 1945
BsmAI	GTCTC	4 cut(s)	125, 909, 1908, 2202
BsmFI	GGGAC	3 cut(s)	308, 788, 843
BsmI	GAATGC	2 cut(s)	715, 1363
BsnI	GGCC	3 cut(s)	86, 318, 359
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	2 cut(s)	312, 906
Bsp119I	TTCGAA	1 cut(s)	1793
Bsp1286I	GDGCHC	3 cut(s)	462, 862, 1970
Bsp143I	GATC	7 cut(s)	210, 819, 1410, 1626, 1875, 1982, 2139
BspACI	CCGC	6 cut(s)	387, 568, 570, 826, 1293, 1371
BspANI	GGCC	3 cut(s)	86, 318, 359
BspCNI	CTCAG	3 cut(s)	511, 1242, 2148
BspFNI	CGCG	2 cut(s)	389, 570
BspLI	GGNNCC	3 cut(s)	317, 1075, 1140
BspMAI	CTGCAG	1 cut(s)	1871
BspPI	GGATC	3 cut(s)	205, 1883, 2147
BspQI	GCTCTTC	1 cut(s)	1739
BspT104I	TTCGAA	1 cut(s)	1793
BspTNI	GGTCTC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	1371
BsrDI	GCAATG	3 cut(s)	286, 955, 1386
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	345, 1002, 2267
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	4 cut(s)	568, 1757, 1861, 2105
BssMI	GATC	7 cut(s)	210, 819, 1410, 1626, 1875, 1982, 2139
BssNI	GRCGYC	1 cut(s)	585
Bst2UI	CCWGG	3 cut(s)	1758, 1863, 2106
Bst4CI	ACNGT	5 cut(s)	542, 694, 1493, 1544, 2063
Bst6I	CTCTTC	4 cut(s)	344, 1739, 1832, 1973
BstACI	GRCGYC	1 cut(s)	585
BstBI	TTCGAA	1 cut(s)	1793
BstC8I	GCNNGC	7 cut(s)	8, 889, 946, 969, 1166, 1480, 1573
BstDEI	CTNAG	6 cut(s)	519, 1229, 1244, 1676, 2117, 2135
BstDSI	CCRYGG	1 cut(s)	568
BstENI	CCTNNNNNAGG	1 cut(s)	768
BstF5I	GGATG	5 cut(s)	496, 657, 1245, 1514, 1924
BstFNI	CGCG	2 cut(s)	389, 570
BstKTI	GATC	7 cut(s)	213, 822, 1413, 1629, 1878, 1985, 2142
BstMAI	GTCTC	4 cut(s)	125, 909, 1908, 2202
BstMBI	GATC	7 cut(s)	210, 819, 1410, 1626, 1875, 1982, 2139
BstMCI	CGRYCG	1 cut(s)	1594
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 379, 950
BstNI	CCWGG	3 cut(s)	1758, 1863, 2106
BstNSI	RCATGY	6 cut(s)	466, 904, 1482, 1531, 1804, 1903
BstPAI	GACNNNNGTC	1 cut(s)	835
BstSCI	CCNGG	7 cut(s)	324, 365, 419, 659, 1756, 1861, 2104
BstSFI	CTRYAG	2 cut(s)	768, 1867
BstSLI	GKGCMC	2 cut(s)	462, 862
BstUI	CGCG	2 cut(s)	389, 570
BstV1I	GCAGC	4 cut(s)	1202, 1223, 1494, 1853
BstV2I	GAAGAC	1 cut(s)	2103
BstX2I	RGATCY	2 cut(s)	1410, 2139
BstYI	RGATCY	2 cut(s)	1410, 2139
Bsu36I	CCTNAGG	2 cut(s)	2117, 2135
BsuRI	GGCC	3 cut(s)	86, 318, 359
BtgI	CCRYGG	1 cut(s)	568
BtrI	CACGTC	1 cut(s)	894
BtsCI	GGATG	5 cut(s)	496, 657, 1245, 1514, 1924
BtsI	GCAGTG	1 cut(s)	1270
BtsIMutI	CAGTG	5 cut(s)	352, 547, 995, 1270, 2068
Cac8I	GCNNGC	7 cut(s)	8, 889, 946, 969, 1166, 1480, 1573
CaiI	CAGNNNCTG	2 cut(s)	109, 2142
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	4 cut(s)	85, 316, 397, 1053
Cfr42I	CCGCGG	1 cut(s)	571
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	1 cut(s)	690
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	6 cut(s)	519, 1229, 1244, 1676, 2117, 2135
DpnI	GATC	7 cut(s)	212, 821, 1412, 1628, 1877, 1984, 2141
DpnII	GATC	7 cut(s)	210, 819, 1410, 1626, 1875, 1982, 2139
DraI	TTTAAA	1 cut(s)	2233
Eam1104I	CTCTTC	4 cut(s)	344, 1739, 1832, 1973
EarI	CTCTTC	4 cut(s)	344, 1739, 1832, 1973
Ecl136II	GAGCTC	1 cut(s)	1968
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	1970
Eco31I	GGTCTC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	1450
Eco47I	GGWCC	2 cut(s)	397, 1053
Eco53kI	GAGCTC	1 cut(s)	1968
Eco57I	CTGAAG	3 cut(s)	611, 689, 1830
Eco81I	CCTNAGG	2 cut(s)	2117, 2135
Eco88I	CYCGRG	2 cut(s)	312, 906
EcoICRI	GAGCTC	1 cut(s)	1968
EcoNI	CCTNNNNNAGG	1 cut(s)	768
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	1880
EcoRII	CCWGG	3 cut(s)	1756, 1861, 2104
EcoRV	GATATC	1 cut(s)	1450
EcoT22I	ATGCAT	3 cut(s)	717, 1203, 1386
EcoT38I	GRGCYC	1 cut(s)	1970
FalI	AAGNNNNNCTT	2 cut(s)	1718, 1750
FaqI	GGGAC	3 cut(s)	308, 788, 843
FauI	CCCGC	2 cut(s)	563, 819
FbaI	TGATCA	2 cut(s)	819, 1626
FblI	GTMKAC	1 cut(s)	1718
Fnu4HI	GCNGC	6 cut(s)	568, 1191, 1212, 1294, 1483, 1867
FokI	GGATG	5 cut(s)	503, 664, 1252, 1521, 1911
FriOI	GRGCYC	1 cut(s)	1970
Fsp4HI	GCNGC	6 cut(s)	568, 1191, 1212, 1294, 1483, 1867
FspBI	CTAG	6 cut(s)	687, 744, 753, 1068, 1338, 1395
GluI	GCNGC	6 cut(s)	568, 1191, 1212, 1294, 1483, 1867
GsuI	CTGGAG	2 cut(s)	1019, 2088
HaeIII	GGCC	3 cut(s)	86, 318, 359
HapII	CCGG	7 cut(s)	7, 326, 366, 420, 660, 1172, 1748
HgaI	GACGC	1 cut(s)	593
Hin1I	GRCGYC	1 cut(s)	585
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	7 cut(s)	106, 206, 434, 799, 805, 1715, 1840
HpaII	CCGG	7 cut(s)	7, 326, 366, 420, 660, 1172, 1748
HphI	GGTGA	4 cut(s)	133, 929, 1453, 2159
Hpy188I	TCNGA	8 cut(s)	111, 708, 721, 804, 841, 898, 2094, 2207
Hpy188III	TCNNGA	6 cut(s)	906, 1231, 1311, 1630, 1885, 2137
Hpy99I	CGWCG	2 cut(s)	454, 898
HpyAV	CCTTC	8 cut(s)	265, 493, 716, 1081, 1201, 1789, 2032, 2180
HpyCH4III	ACNGT	5 cut(s)	542, 694, 1493, 1544, 2063
HpyCH4IV	ACGT	2 cut(s)	792, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 379, 950
HpyF3I	CTNAG	6 cut(s)	519, 1229, 1244, 1676, 2117, 2135
HpySE526I	ACGT	2 cut(s)	792, 893
Hsp92I	GRCGYC	1 cut(s)	585
KroI	GCCGGC	1 cut(s)	6
KroNI	GCCGGC	1 cut(s)	8
Ksp22I	TGATCA	2 cut(s)	819, 1626
KspI	CCGCGG	1 cut(s)	571
Kzo9I	GATC	7 cut(s)	210, 819, 1410, 1626, 1875, 1982, 2139
LguI	GCTCTTC	1 cut(s)	1739
LmnI	GCTCC	4 cut(s)	1105, 1138, 1667, 2041
Lsp1109I	GCAGC	4 cut(s)	1202, 1223, 1494, 1853
LweI	GCATC	6 cut(s)	481, 1110, 1188, 1230, 1413, 1642
MaeI	CTAG	6 cut(s)	687, 744, 753, 1068, 1338, 1395
MaeII	ACGT	2 cut(s)	792, 893
MaeIII	GTNAC	5 cut(s)	26, 476, 958, 1579, 1702
MalI	GATC	7 cut(s)	212, 821, 1412, 1628, 1877, 1984, 2141
MbiI	CCGCTC	1 cut(s)	1371
MboI	GATC	7 cut(s)	210, 819, 1410, 1626, 1875, 1982, 2139
MflI	RGATCY	2 cut(s)	1410, 2139
MhlI	GDGCHC	3 cut(s)	462, 862, 1970
MlyI	GAGTC	2 cut(s)	1724, 1849
MmeI	TCCRAC	3 cut(s)	819, 876, 1853
Mph1103I	ATGCAT	3 cut(s)	717, 1203, 1386
MroNI	GCCGGC	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	1733
MseI	TTAA	5 cut(s)	59, 1017, 1521, 2127, 2232
MslI	CAYNNNNRTG	2 cut(s)	813, 1698
MspA1I	CMGCKG	1 cut(s)	570
MspI	CCGG	7 cut(s)	7, 326, 366, 420, 660, 1172, 1748
MspR9I	CCNGG	7 cut(s)	326, 367, 421, 661, 1758, 1863, 2106
Mva1269I	GAATGC	2 cut(s)	715, 1363
MvaI	CCWGG	3 cut(s)	1758, 1863, 2106
MvnI	CGCG	2 cut(s)	389, 570
MwoI	GCNNNNNNNGC	3 cut(s)	92, 379, 950
NaeI	GCCGGC	1 cut(s)	8
NciI	CCSGG	4 cut(s)	326, 367, 421, 661
NdeII	GATC	7 cut(s)	210, 819, 1410, 1626, 1875, 1982, 2139
NgoMIV	GCCGGC	1 cut(s)	6
NlaIV	GGNNCC	3 cut(s)	317, 1075, 1140
NmuCI	GTSAC	3 cut(s)	26, 476, 1702
NsiI	ATGCAT	3 cut(s)	717, 1203, 1386
NspI	RCATGY	6 cut(s)	466, 904, 1482, 1531, 1804, 1903
NspV	TTCGAA	1 cut(s)	1793
PaeI	GCATGC	1 cut(s)	1482
PaeR7I	CTCGAG	1 cut(s)	906
PceI	AGGCCT	1 cut(s)	359
PciI	ACATGT	2 cut(s)	462, 900
PciSI	GCTCTTC	1 cut(s)	1739
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
PctI	GAATGC	2 cut(s)	715, 1363
PdiI	GCCGGC	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	1733
PfeI	GAWTC	5 cut(s)	106, 206, 434, 799, 805
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	6 cut(s)	569, 1192, 1213, 1295, 1484, 1868
PleI	GAGTC	2 cut(s)	1723, 1848
PpsI	GAGTC	2 cut(s)	1723, 1848
PscI	ACATGT	2 cut(s)	462, 900
PshAI	GACNNNNGTC	1 cut(s)	835
Psp124BI	GAGCTC	1 cut(s)	1970
Psp6I	CCWGG	3 cut(s)	1756, 1861, 2104
PspGI	CCWGG	3 cut(s)	1756, 1861, 2104
PspN4I	GGNNCC	3 cut(s)	317, 1075, 1140
PspPI	GGNCC	4 cut(s)	85, 316, 397, 1053
PstI	CTGCAG	1 cut(s)	1871
PstNI	CAGNNNCTG	2 cut(s)	109, 2142
PsuI	RGATCY	2 cut(s)	1410, 2139
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
RseI	CAYNNNNRTG	2 cut(s)	813, 1698
SacI	GAGCTC	1 cut(s)	1970
SacII	CCGCGG	1 cut(s)	571
SapI	GCTCTTC	1 cut(s)	1739
SaqAI	TTAA	5 cut(s)	59, 1017, 1521, 2127, 2232
SatI	GCNGC	6 cut(s)	568, 1191, 1212, 1294, 1483, 1867
Sau3AI	GATC	7 cut(s)	210, 819, 1410, 1626, 1875, 1982, 2139
Sau96I	GGNCC	4 cut(s)	85, 316, 397, 1053
SchI	GAGTC	2 cut(s)	1724, 1849
ScrFI	CCNGG	7 cut(s)	326, 367, 421, 661, 1758, 1863, 2106
SduI	GDGCHC	3 cut(s)	462, 862, 1970
SfaNI	GCATC	6 cut(s)	481, 1110, 1188, 1230, 1413, 1642
SfcI	CTRYAG	2 cut(s)	768, 1867
Sfr274I	CTCGAG	1 cut(s)	906
Sfr303I	CCGCGG	1 cut(s)	571
SfuI	TTCGAA	1 cut(s)	1793
SgrBI	CCGCGG	1 cut(s)	571
SinI	GGWCC	2 cut(s)	397, 1053
SlaI	CTCGAG	1 cut(s)	906
SmiMI	CAYNNNNRTG	2 cut(s)	813, 1698
SmlI	CTYRAG	1 cut(s)	906
SmoI	CTYRAG	1 cut(s)	906
SphI	GCATGC	1 cut(s)	1482
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	6 cut(s)	387, 568, 570, 826, 1293, 1371
SspI	AATATT	3 cut(s)	1042, 1186, 1783
SspMI	CTAG	6 cut(s)	687, 744, 753, 1068, 1338, 1395
SstI	GAGCTC	1 cut(s)	1970
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	7 cut(s)	324, 365, 419, 659, 1756, 1861, 2104
TaaI	ACNGT	5 cut(s)	542, 694, 1493, 1544, 2063
TaiI	ACGT	2 cut(s)	795, 896
TaqI	TCGA	7 cut(s)	204, 209, 432, 907, 1312, 1793, 1878
TaqII	GACCGA	2 cut(s)	495, 1580
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	2 cut(s)	570, 1296
TfiI	GAWTC	5 cut(s)	106, 206, 434, 799, 805
Tru1I	TTAA	5 cut(s)	59, 1017, 1521, 2127, 2232
Tru9I	TTAA	5 cut(s)	59, 1017, 1521, 2127, 2232
TscAI	CASTG	5 cut(s)	352, 547, 1002, 1270, 2068
TseFI	GTSAC	3 cut(s)	26, 476, 1702
TseI	GCWGC	4 cut(s)	1190, 1211, 1482, 1866
Tsp45I	GTSAC	3 cut(s)	26, 476, 1702
TspDTI	ATGAA	7 cut(s)	239, 797, 1850, 1949, 1991, 2161, 2213
TspGWI	ACGGA	1 cut(s)	1961
TspRI	CASTG	5 cut(s)	352, 547, 1002, 1270, 2068
VneI	GTGCAC	2 cut(s)	458, 858
VpaK11BI	GGWCC	2 cut(s)	397, 1053
XagI	CCTNNNNNAGG	1 cut(s)	768
XapI	RAATTY	3 cut(s)	1342, 1880, 2168
XceI	RCATGY	6 cut(s)	466, 904, 1482, 1531, 1804, 1903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1342
XhoI	CTCGAG	1 cut(s)	906
XmiI	GTMKAC	1 cut(s)	1718
XmnI	GAANNNNTTC	1 cut(s)	1733
XspI	CTAG	6 cut(s)	687, 744, 753, 1068, 1338, 1395
Zsp2I	ATGCAT	3 cut(s)	717, 1203, 1386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.