MD15G1127800.v1.1

glycosyltransferase At5g11130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017113
Physical Location & Seq
Reverse (-)
9250917 .. 9252420
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1127800.v1.1.491

Sequence Viewer

Length: 366 bp
ATGCAAGTGAAGAAGAACCAGTTTGAGAAAATAGAAGATGGGATGGCAAGAGCAAGAGACGCGATACGAGAAGCTGCTCGATCAAGAAGCTATACGTCATACAAGAAGGAGAATTTTGTTCCAAGAGGATCGGTTTACATCAACCCTTATTCCTTTCATCATTGCAGACTCTCCATGGATTCTAGGGCACGGGCACCAAAGTGGCAAAATGCTTTTCTAAATTTGCCTTGTTTTCGAATTGTTAATTACGTAGTAGGTCGATCCTTCTTCAAGGATAGTTGGCATTACATTCTGAAATTCCAAAGAATAATCGAACCACTTTTTAAATGTAAGATTCCATATCATTCAGGGGAGTGGATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

122

Amino Acids

14.53

Weight (kDa)

9.97

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G42180 AT3G42180
malus_domestica MD15G1127800.v1.1
pyrus_communis pycom04g21400
rosa_samantha Rh2CG029700 Rh2CG029900 Rh2DG029600 Rh2DG029700 Rh3AG008300 Rh3AG008400 Rh3DG008600 Rh6BG392900 Rh6DG385300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccII CGCG 1 cut(s) 62
AclWI GGATC 3 cut(s) 136, 255, 365
AcsI RAATTY 3 cut(s) 112, 220, 296
AgsI TTSAA 1 cut(s) 271
AleI CACNNNNGTG 1 cut(s) 199
AluBI AGCT 2 cut(s) 74, 90
AluI AGCT 2 cut(s) 74, 90
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 3 cut(s) 136, 255, 365
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 3 cut(s) 112, 220, 296
AsuII TTCGAA 1 cut(s) 235
BaeGI GKGCMC 2 cut(s) 190, 196
BanI GGYRCC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 32, 37
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 235
BsaAI YACGTR 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 19
BseSI GKGCMC 2 cut(s) 190, 196
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 51
BsmBI CGTCTC 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 190, 196
Bsp143I GATC 4 cut(s) 80, 128, 260, 357
Bsp19I CCATGG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 3 cut(s) 136, 255, 365
BspT104I TTCGAA 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 4 cut(s) 80, 128, 260, 357
BssT1I CCWWGG 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 4 cut(s) 83, 131, 263, 360
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 4 cut(s) 80, 128, 260, 357
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSLI GKGCMC 2 cut(s) 190, 196
BstSNI TACGTA 1 cut(s) 250
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 48
CseI GACGC 1 cut(s) 68
CviAII CATG 1 cut(s) 175
CviJI RGCY 2 cut(s) 74, 90
CviKI_1 RGCY 2 cut(s) 74, 90
DpnI GATC 4 cut(s) 82, 130, 262, 359
DpnII GATC 4 cut(s) 80, 128, 260, 357
DraI TTTAAA 1 cut(s) 325
Eco105I TACGTA 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 1 cut(s) 178
FaiI YATR 4 cut(s) 93, 100, 176, 340
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 183
GluI GCNGC 1 cut(s) 75
HgaI GACGC 1 cut(s) 68
Hin1II CATG 1 cut(s) 178
HinfI GANTC 3 cut(s) 168, 179, 334
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 100, 274
HpyCH4IV ACGT 2 cut(s) 95, 249
HpyCH4V TGCA 2 cut(s) 4, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 2 cut(s) 95, 249
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 4 cut(s) 80, 128, 260, 357
LpnPI CCDG 2 cut(s) 32, 333
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 1 cut(s) 183
MaeII ACGT 2 cut(s) 95, 249
MalI GATC 4 cut(s) 82, 130, 262, 359
MboI GATC 4 cut(s) 80, 128, 260, 357
MboII GAAGA 4 cut(s) 22, 25, 47, 259
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 2 cut(s) 190, 196
MluCI AATT 5 cut(s) 112, 220, 237, 244, 296
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 1 cut(s) 119
MseI TTAA 2 cut(s) 243, 324
MslI CAYNNNNRTG 1 cut(s) 199
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 59
NcoI CCATGG 1 cut(s) 174
NdeII GATC 4 cut(s) 80, 128, 260, 357
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 199
PfeI GAWTC 2 cut(s) 179, 334
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 199
SaqAI TTAA 2 cut(s) 243, 324
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 4 cut(s) 80, 128, 260, 357
SchI GAGTC 1 cut(s) 162
SduI GDGCHC 2 cut(s) 190, 196
SetI ASST 5 cut(s) 76, 92, 98, 252, 259
SfuI TTCGAA 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 199
SnaBI TACGTA 1 cut(s) 250
Sse9I AATT 5 cut(s) 112, 220, 237, 244, 296
SspMI CTAG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 174
TaiI ACGT 2 cut(s) 98, 252
TaqI TCGA 4 cut(s) 79, 235, 259, 312
TasI AATT 5 cut(s) 112, 220, 237, 244, 296
TfiI GAWTC 2 cut(s) 179, 334
Tru1I TTAA 2 cut(s) 243, 324
Tru9I TTAA 2 cut(s) 243, 324
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 146
XapI RAATTY 3 cut(s) 112, 220, 296
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.